Enthalpy of helix-coil transition: Missing link in rationalizing the thermodynamics of helix-forming propensities of the amino acid residues

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 5, 2005, Pages 1413-1418

  Richardson, John M ^a   Lopez, Maria M ^a   Makhatadze, George I ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Calorimetry; Protein stability; Thermodynamics

Indexed keywords

AMINO ACID; PEPTIDE;

AMINO ACID ANALYSIS; ARTICLE; CALORIMETRY; ENTHALPY; ENTROPY; METAL BINDING; PRIORITY JOURNAL; THERMODYNAMICS;

AMINO ACID SEQUENCE; AMINO ACIDS; CALORIMETRY; CIRCULAR DICHROISM; DRUG STABILITY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; THERMODYNAMICS;

EID: 13444279887     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0408004102     Document Type: Article

References (42)

1. Pauling, L., Corey, R. B. & Branson, H. R. (1951) Proc. Natl. Acad. Sci. USA 37, 205-210.
2. Scholtz, J. M. & Baldwin, R. L. (1992) Annu. Rev. Biophys. Biomol. Struct. 21, 95-118.
3. Chakrabartty, A. & Baldwin, R. L. (1995) Adv. Protein Chem. 46, 141-176.
4. Rohl, C. A. & Baldwin, R. L. (1998) Methods Enzymol, 295, 1-26.
5. Baldwin, R. L. & Rose, G. D. (1999) Trends Biochem. Sci. 24, 26-33.
6. Nymeyer, H. & Garcia, A. E. (2003) Proc. Natl. Acad. Sci. USA 100, 13934-13939.
7. Gnanakaran, S., Nymeyer, H., Portman, J., Sanbonmatsu, K. Y. & Garcia, A. E. (2003) Curr. Opin. Struct. Biol. 13, 168-174.
8. Schellman, J. A. (1955) C. R. Trav. Lab. Carlsberg Ser. Chim. 29, 223-229.
9. Schellman, J. A. (1955) C. R. Trav. Lab. Carlsberg Ser. Chim. 29, 230-259.
10. Sueki, M., Lee, S., Powers, S. P., Denton, J. B., Konishi, Y. & Scheraga, H. A. (1984) Macromolecules 17, 148-155.
11. Padmanabhan, S., Marqusee, S., Ridgeway, T., Laue, T. M. & Baldwin, R. L. (1990) Nature 344, 268-270.
12. Lyu, P. C., Liff, M. I., Marky, L. A. & Kallenbach, N. R. (1990) Science 250, 669-673.
13. O'Neil, K. T. & DeGrado, W. F. (1990) Science 250, 646-651.
14. Creamer, T. P. & Rose, G. D. (1992) Proc. Natl. Acad. Sci. USA 89, 5937-5941.
15. Lee, K. H., Xie, D., Freire, E. & Amzel, L. M. (1994) Proteins 20, 68-84.
16. Blaber, M., Zhang, X. J., Lindstrom, J. D., Pepiot, S. D., Baase, W. A. & Matthews, B. W. (1994) J. Mol. Biol. 235, 600-624.
17. Creamer, T. P. & Rose, G. D. (1994) Proteins 19, 85-97.
18. Luo, P. & Baldwin, R. L. (1997) Biochemistry 36, 8413-8421.
19. Luo, P. & Baldwin, R. L. (1999) Proc. Natl. Acad. Sci. USA 96, 4930-4935.
20. Ermolenko, D. N., Richardson, J. M. & Makhatadze, G. I. (2003) Protein Sci. 12, 1169-1176.
21. Scholtz, J. M., Marqusee, S., Baldwin, R. L., York, E. J., Stewart, J. M., Santoro, M. & Bolen, D. W. (1991) Proc. Natl. Acad. Sci. USA 88, 2854-2858.
22. Richardson, J. M., McMahon, K. W., MacDonald, C. C. & Makhatadze, G. I. (1999) Biochemistry 38, 12869-12875.
23. Richardson, J. M. & Makhatadze, G. I. (2004) J. Mol. Biol. 335, 1029-1037.
24. Siedlecka, M., Goch, G., Ejchart, A., Sticht, H. & Bierzynski, A. (1999) Proc. Natl. Acad. Sci. USA 96, 903-908.
25. Wojcik, J., Goral, J., Pawlowski, K. & Bierzynski, A. (1997) Biochemistry 36, 680-687.
26. Lopez, M. M., Chin, D. H., Baldwin, R. L. & Makhatadze, G. I. (2002) Proc. Natl. Acad. Sci. USA 99, 1298-1302.
27. Chin, D. H., Woody, R. W., Rohl, C. A. & Baldwin, R. L. (2002) Proc. Natl. Acad. Sci. USA 99, 15416-15421.
28. Lacroix, E., Viguera, A. R. & Serrano, L. (1998) J. Mol. Biol. 284, 173-191.
29. Padmanabhan, S. & Baldwin, R. L. (1991) J. Mol. Biol. 219, 135-137.
30. Padmanabhan, S., York, E. J., Stewart, J. M. & Baldwin, R. L. (1996) J. Mol. Biol. 257, 726-734.
31. Lyu, P. C., Sherman, J. C., Chen, A. & Kallenbach, N. R. (1991) Proc. Natl. Acad. Sci. USA 88, 5317-5320.
32. Goch, G., Maciejczyk, M., Oleszczuk, M., Stachowiak, D., Malicka, J. & Bierzynski, A. (2003) Biochemistry 42, 6840-6847.
33. Horovitz, A., Matthews, J. M. & Fersht, A. R. (1992) J. Mol. Biol. 227, 560-568.
34. Rohl, C. A., Chakrabartty, A. & Baldwin, R. L. (1996) Protein Sci. 5, 2623-2637.
35. Pace, C. N. & Scholtz, J. M. (1998) Biophys. J. 75, 422-427.
36. Baldwin, R. L. (2003) J. Biol. Chem. 278, 17581-17588.
37. Avbelj, F., Luo, P. & Baldwin, R. L. (2000) Proc. Natl. Acad. Sci. USA 97, 10786-10791.
38. Avbelj, F. & Baldwin, R. L. (2003) Proc. Natl. Acad. Sci. USA 100, 5742-5747.
39. Ghosh, T., Garde, S. & Garcia, A. E. (2003) Biophys. J. 85, 3187-3193.
40. Thomas, S. T., Loladze, V. V. & Makhatadze, G. I. (2001) Proc. Natl. Acad. Sci. USA 98, 10670-10675.
41. Avbelj, F. & Baldwin, R. L. (2004) Proc. Natl. Acad. Sci. USA 101, 10967-10972.
42. Makhatadze, G. I. & Privalov, P. L. (1995) Adv. Protein Chem. 47, 307-425.