-
3
-
-
0032317156
-
Deciphering rules of helix stability in peptides
-
Rohl C.A., Baldwin R.L. Deciphering rules of helix stability in peptides. Methods Enzymol. 295:1998;1-26.
-
(1998)
Methods Enzymol.
, vol.295
, pp. 1-26
-
-
Rohl, C.A.1
Baldwin, R.L.2
-
4
-
-
0036280693
-
Protein and peptide folding explored with molecular simulations
-
Brooks C.L. 3rd. Protein and peptide folding explored with molecular simulations. Accts. Chem. Res. 35:2002;447-454.
-
(2002)
Accts. Chem. Res.
, vol.35
, pp. 447-454
-
-
Brooks III, C.L.1
-
5
-
-
0037397987
-
Peptide folding simulations
-
Gnanakaran S., Nymeyer H., Portman J., Sanbonmatsu K.Y., Garcia A.E. Peptide folding simulations. Curr. Opin. Struct. Biol. 13:2003;168-174.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 168-174
-
-
Gnanakaran, S.1
Nymeyer, H.2
Portman, J.3
Sanbonmatsu, K.Y.4
Garcia, A.E.5
-
6
-
-
0025849701
-
Calorimetric determination of the enthalpy change for the alpha-helix to coil transition of an alanine peptide in water
-
Scholtz J.M., Marqusee S., Baldwin R.L., York E.J., Stewart J.M., Santoro M., Bolen D.W. Calorimetric determination of the enthalpy change for the alpha-helix to coil transition of an alanine peptide in water. Proc. Natl Acad. Sci. USA. 88:1991;2854-2858.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 2854-2858
-
-
Scholtz, J.M.1
Marqusee, S.2
Baldwin, R.L.3
York, E.J.4
Stewart, J.M.5
Santoro, M.6
Bolen, D.W.7
-
7
-
-
0033613218
-
MEARA sequence repeat of human CstF-64 polyadenylation factor is helical in solution. A spectroscopic and calorimetric study
-
Richardson J.M., McMahon K.W., MacDonald C.C., Makhatadze G.I. MEARA sequence repeat of human CstF-64 polyadenylation factor is helical in solution. A spectroscopic and calorimetric study. Biochemistry. 38:1999;12869-12875.
-
(1999)
Biochemistry
, vol.38
, pp. 12869-12875
-
-
Richardson, J.M.1
McMahon, K.W.2
MacDonald, C.C.3
Makhatadze, G.I.4
-
8
-
-
0013848686
-
Comparison of theories of the helix-coil transition in polypeptides
-
Poland D.C., Scheraga H.A. Comparison of theories of the helix-coil transition in polypeptides. J. Chem. Phys. 43:1965;2071-2074.
-
(1965)
J. Chem. Phys.
, vol.43
, pp. 2071-2074
-
-
Poland, D.C.1
Scheraga, H.A.2
-
9
-
-
0024293204
-
Conformation of peptide fragments of proteins in aqueous solution: Implications for initiation of protein folding
-
Wright P.E., Dyson H.J., Lerner R.A. Conformation of peptide fragments of proteins in aqueous solution: implications for initiation of protein folding. Biochemistry. 27:1988;7167-7175.
-
(1988)
Biochemistry
, vol.27
, pp. 7167-7175
-
-
Wright, P.E.1
Dyson, H.J.2
Lerner, R.A.3
-
10
-
-
0027772853
-
NMR evidence for multiple conformations in a highly helical model peptide
-
Merutka G., Morikis D., Bruschweiler R., Wright P.E. NMR evidence for multiple conformations in a highly helical model peptide. Biochemistry. 32:1993;13089-13097.
-
(1993)
Biochemistry
, vol.32
, pp. 13089-13097
-
-
Merutka, G.1
Morikis, D.2
Bruschweiler, R.3
Wright, P.E.4
-
12
-
-
0027249564
-
Residue helix parameters obtained from dichroic analysis of peptides of defined sequence
-
Park S.H., Shalongo W., Stellwagen E. Residue helix parameters obtained from dichroic analysis of peptides of defined sequence. Biochemistry. 32:1993;7048-7053.
-
(1993)
Biochemistry
, vol.32
, pp. 7048-7053
-
-
Park, S.H.1
Shalongo, W.2
Stellwagen, E.3
-
13
-
-
0002439879
-
Circular dichroism in peptides
-
E. Gross, & J. Meienhofer. New York: Wiley
-
Woody R.W. Circular dichroism in peptides. Gross E., Meienhofer J. The peptides. The peptides. vol. 7:1985;Wiley, New York.
-
(1985)
The Peptides. The Peptides
, vol.7
-
-
Woody, R.W.1
-
14
-
-
0028959773
-
Circular dichroism
-
Woody R.W. Circular dichroism. Methods Enzymol. 246:1995;34-71.
-
(1995)
Methods Enzymol.
, vol.246
, pp. 34-71
-
-
Woody, R.W.1
-
15
-
-
0000188566
-
Measuring protein thermostability by differential scanning calorimetry
-
J.E. Coligan, B.M. Dunn, H.L. Ploegh, D.W. Speicher, & P.T. Wingfield. New York: Wiley
-
Makhatadze G.I. Measuring protein thermostability by differential scanning calorimetry. Coligan J.E., Dunn B.M., Ploegh H.L., Speicher D.W., Wingfield P.T. Current Protocols in Protein Chemistry. Current Protocols in Protein Chemistry. vol. 2:1998;7.9.1-7.9.14 Wiley, New York.
-
(1998)
Current Protocols in Protein Chemistry. Current Protocols in Protein Chemistry
, vol.2
, pp. 791-7914
-
-
Makhatadze, G.I.1
-
16
-
-
0018063963
-
Thermodynamic characterization of conformational states of biological macromolecules using differential scanning calorimetry
-
Biltonen R.L., Freire E. Thermodynamic characterization of conformational states of biological macromolecules using differential scanning calorimetry. CRC Crit. Rev. Biochem. 5:1978;85-124.
-
(1978)
CRC Crit. Rev. Biochem.
, vol.5
, pp. 85-124
-
-
Biltonen, R.L.1
Freire, E.2
-
17
-
-
0028674091
-
Statistical thermodynamic analysis of differential scanning calorimetry data: Structural deconvolution of heat capacity function of proteins
-
Freire E. Statistical thermodynamic analysis of differential scanning calorimetry data: structural deconvolution of heat capacity function of proteins. Methods Enzymol. 240:1994;502-530.
-
(1994)
Methods Enzymol.
, vol.240
, pp. 502-530
-
-
Freire, E.1
-
18
-
-
0025360593
-
Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solution: Hydration effect
-
Makhatadze G.I., Privalov P.L. Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solution: hydration effect. J. Mol. Biol. 213:1990;375-384.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 375-384
-
-
Makhatadze, G.I.1
Privalov, P.L.2
-
19
-
-
0014023633
-
Calorimetric heat of the helix-coil transition of poly-L-glutamic acid
-
Rialdi G., Hermans J. Jr. Calorimetric heat of the helix-coil transition of poly-L-glutamic acid. J. Am. Chem. Soc. 88:1966;5719-5720.
-
(1966)
J. Am. Chem. Soc.
, vol.88
, pp. 5719-5720
-
-
Rialdi, G.1
Hermans Jr., J.2
-
20
-
-
0014979264
-
Calorimetric measurement of enthalpy change in the isothermal helix-coil transition of poly-L-lysine in aqueous solution
-
Chou P.Y., Scheraga H.A. Calorimetric measurement of enthalpy change in the isothermal helix-coil transition of poly-L-lysine in aqueous solution. Biopolymers. 10:1971;657-680.
-
(1971)
Biopolymers
, vol.10
, pp. 657-680
-
-
Chou, P.Y.1
Scheraga, H.A.2
-
21
-
-
0033608974
-
Interaction between water and polar groups of the helix backbone: An important determinant of helix propensities
-
Luo P., Baldwin R.L. Interaction between water and polar groups of the helix backbone: an important determinant of helix propensities. Proc. Natl Acad. Sci. USA. 96:1999;4930-4935.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 4930-4935
-
-
Luo, P.1
Baldwin, R.L.2
-
22
-
-
0037907569
-
Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity
-
Ermolenko D.N., Richardson J.M., Makhatadze G.I. Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity. Protein Sci. 12:2003;1169-1176.
-
(2003)
Protein Sci.
, vol.12
, pp. 1169-1176
-
-
Ermolenko, D.N.1
Richardson, J.M.2
Makhatadze, G.I.3
-
23
-
-
0018588511
-
Stability of proteins: Small globular proteins
-
Privalov P.L. Stability of proteins: small globular proteins. Advan. Protein Chem. 33:1979;167-241.
-
(1979)
Advan. Protein Chem.
, vol.33
, pp. 167-241
-
-
Privalov, P.L.1
-
25
-
-
0034971963
-
Heat capacity changes upon burial of polar and non-polar groups in proteins
-
Loladze V.V., Ermolenko D.N., Makhatadze G.I. Heat capacity changes upon burial of polar and non-polar groups in proteins. Protein Sci. 10:2001;1343-1352.
-
(2001)
Protein Sci.
, vol.10
, pp. 1343-1352
-
-
Loladze, V.V.1
Ermolenko, D.N.2
Makhatadze, G.I.3
-
26
-
-
0032550183
-
Heat capacities of amino acids, peptides and proteins
-
Makhatadze G.I. Heat capacities of amino acids, peptides and proteins. Biophys. Chem. 71:1998;133-156.
-
(1998)
Biophys. Chem.
, vol.71
, pp. 133-156
-
-
Makhatadze, G.I.1
-
27
-
-
0000616995
-
Apparent molal heat capacities of amino acids and other organic compounds
-
Edsall J.T. Apparent molal heat capacities of amino acids and other organic compounds. J. Am. Chem. Soc. 1935;57.
-
(1935)
J. Am. Chem. Soc.
, pp. 57
-
-
Edsall, J.T.1
-
28
-
-
0000180763
-
Temperature dependence of the hydrophobic interaction in protein folding
-
Baldwin R.L. Temperature dependence of the hydrophobic interaction in protein folding. Proc. Natl Acad. Sci. USA. 83:1986;8069-8072.
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 8069-8072
-
-
Baldwin, R.L.1
-
29
-
-
0031375098
-
Molecular origin of hydration heat capacity changes of hydrophobic solutes: Perturbation of water structure around alkanes
-
Madan B., Sharp K. Molecular origin of hydration heat capacity changes of hydrophobic solutes: perturbation of water structure around alkanes. J. Phys. Chem. ser. B. 101:1997;11237-11242.
-
(1997)
J. Phys. Chem. Ser. B
, vol.101
, pp. 11237-11242
-
-
Madan, B.1
Sharp, K.2
-
30
-
-
0000159569
-
Protein structure and the energetics of protein stability
-
Robertson A.D., Murphy K.P. Protein structure and the energetics of protein stability. Chem. Rev. 97:1997;1251-1267.
-
(1997)
Chem. Rev.
, vol.97
, pp. 1251-1267
-
-
Robertson, A.D.1
Murphy, K.P.2
-
31
-
-
0000866128
-
Hydrophobic effect in protein folding and other noncovalent processes involving proteins
-
Spolar R.S., Ha J.H., Record M.T. Jr. Hydrophobic effect in protein folding and other noncovalent processes involving proteins. Proc. Natl Acad. Sci. USA. 86:1989;8382-8385.
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 8382-8385
-
-
Spolar, R.S.1
Ha, J.H.2
Record Jr., M.T.3
-
32
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding
-
Myers J.K., Pace C.N., Scholtz J.M. Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding. Protein Sci. 4:1995;2138-2148.
-
(1995)
Protein Sci.
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
33
-
-
0026684671
-
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
-
Spolar R.S., Livingstone J.R., Record M.T. Jr. Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water. Biochemistry. 31:1992;3947-3955.
-
(1992)
Biochemistry
, vol.31
, pp. 3947-3955
-
-
Spolar, R.S.1
Livingstone, J.R.2
Record Jr., M.T.3
-
34
-
-
0026511652
-
Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding
-
Privalov P.L., Makhatadze G.I. Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding. J. Mol. Biol. 224:1992;715-723.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 715-723
-
-
Privalov, P.L.1
Makhatadze, G.I.2
-
35
-
-
0035958004
-
Energetics of target peptide binding by calmodulin reveals different modes of binding
-
Brokx R.D., Lopez M.M., Vogel H.J., Makhatadze G.I. Energetics of target peptide binding by calmodulin reveals different modes of binding. J. Biol. Chem. 276:2001;14083-14091.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 14083-14091
-
-
Brokx, R.D.1
Lopez, M.M.2
Vogel, H.J.3
Makhatadze, G.I.4
-
36
-
-
0030933329
-
Modeling unfolded states of proteins and peptides. II. Backbone solvent accessibility
-
Creamer T.P., Srinivasan R., Rose G.D. Modeling unfolded states of proteins and peptides. II. Backbone solvent accessibility. Biochemistry. 36:1997;2832-2835.
-
(1997)
Biochemistry
, vol.36
, pp. 2832-2835
-
-
Creamer, T.P.1
Srinivasan, R.2
Rose, G.D.3
-
37
-
-
0037022662
-
Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds
-
Garcia A.E., Sanbonmatsu K.Y. Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds. Proc. Natl Acad. Sci. USA. 99:2002;2782-2787.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 2782-2787
-
-
Garcia, A.E.1
Sanbonmatsu, K.Y.2
-
38
-
-
0025196527
-
The Glu 2- ... Arg 10+ side-chain interaction in the C-peptide helix of ribonuclease a
-
Fairman R., Shoemaker K.R., York E.J., Stewart J.M., Baldwin R.L. The Glu 2- ... Arg 10+ side-chain interaction in the C-peptide helix of ribonuclease A. Biophys. Chem. 37:1990;107-119.
-
(1990)
Biophys. Chem.
, vol.37
, pp. 107-119
-
-
Fairman, R.1
Shoemaker, K.R.2
York, E.J.3
Stewart, J.M.4
Baldwin, R.L.5
-
39
-
-
0027475153
-
Helical peptides with three pairs of Asp-Arg and Glu-Arg residues in different orientations and spacings
-
Huyghues-Despointes B.M., Scholtz J.M., Baldwin R.L. Helical peptides with three pairs of Asp-Arg and Glu-Arg residues in different orientations and spacings. Protein Sci. 2:1993;80-85.
-
(1993)
Protein Sci.
, vol.2
, pp. 80-85
-
-
Huyghues-Despointes, B.M.1
Scholtz, J.M.2
Baldwin, R.L.3
-
41
-
-
0346705193
-
Current protocols in protein science
-
V.B. Chanda. New York: Wiley
-
Coligan J.E. Current protocols in protein science. Chanda V.B. Chemical Analysis. Chemical Analysis. 2.2 Vols. 1998;Wiley, New York.
-
(1998)
Chemical Analysis. Chemical Analysis
, vol.22
-
-
Coligan, J.E.1
-
42
-
-
0031808074
-
A helix propensity scale based on experimental studies of peptides and proteins
-
Pace C.N., Scholtz J.M. A helix propensity scale based on experimental studies of peptides and proteins. Biophys. J. 75:1998;422-427.
-
(1998)
Biophys. J.
, vol.75
, pp. 422-427
-
-
Pace, C.N.1
Scholtz, J.M.2
-
43
-
-
0029896525
-
Guanidine hydrochloride unfolding of peptide helices: Separation of denaturant and salt effects
-
Smith J.S., Scholtz J.M. Guanidine hydrochloride unfolding of peptide helices: separation of denaturant and salt effects. Biochemistry. 35:1996;7292-7297.
-
(1996)
Biochemistry
, vol.35
, pp. 7292-7297
-
-
Smith, J.S.1
Scholtz, J.M.2
-
44
-
-
0032488654
-
Energetics of polar side-chain interactions in helical peptides: Salt effects on ion pairs and hydrogen bonds
-
Smith J.S., Scholtz J.M. Energetics of polar side-chain interactions in helical peptides: salt effects on ion pairs and hydrogen bonds. Biochemistry. 37:1998;33-40.
-
(1998)
Biochemistry
, vol.37
, pp. 33-40
-
-
Smith, J.S.1
Scholtz, J.M.2
-
45
-
-
0025610122
-
Partial molar volumes of polypeptides and their constituent groups in aqueous solution over a broad temperature range
-
Makhatadze G.I., Medvedkin V.N., Privalov P.L. Partial molar volumes of polypeptides and their constituent groups in aqueous solution over a broad temperature range. Biopolymers. 30:1990;1001-1010.
-
(1990)
Biopolymers
, vol.30
, pp. 1001-1010
-
-
Makhatadze, G.I.1
Medvedkin, V.N.2
Privalov, P.L.3
|