Helix-forming properties of size-expanded DNA, an alternative four-base genetic form

Journal of the American Chemical Society

Volumn 127, Issue 5, 2005, Pages 1396-1402

  Liu, Haibo ^a   Gao, Jianmin ^a   Kool, Eric T ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; GENES; GENETIC ENGINEERING; IONIC STRENGTH; SPECTROGRAPHS; STOICHIOMETRY;

FOUR-BASE GENETIC FORM; HELICAL COMPLEXES; HELIX-FORMING PROPERTIES; SEQUENCE GENEARLITY;

DNA;

DOUBLE STRANDED DNA; PYRIMIDINE;

ARTICLE; BASE MISPAIRING; BIOTECHNOLOGICAL PROCEDURES; CIRCULAR DICHROISM; DNA BASE COMPOSITION; DNA STRAND; FLUORESCENCE; IONIC STRENGTH; RNA TRANSLATION; STOICHIOMETRY; TRIPLE HELIX;

BASE PAIRING; BIOPHYSICS; CIRCULAR DICHROISM; DNA; NUCLEIC ACID CONFORMATION; OSMOLAR CONCENTRATION; SPECTROMETRY, FLUORESCENCE;

EID: 13444252456     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja046305l     Document Type: Article

References (33)

1. Benner, S. A.; Hutter, D. Bioorg. Chem. 2002, 30, 62-80.
2. Seela, F. Collection Symposium Series 2002, 5, 1-15.
3. Kuimelis, R. G.; McLaughlin, L. W. Nucleic Acids Mol. Biol. 1996, 10, 197-215.
4. Stender, H. Expert Rev. Mol. Diagn. 2003, 3, 649-655.
5. Petersen, M.; Wengel, J. Trends Biotechnol. 2003, 21, 74-81.
6. Murdock, D. G.; Wallace, D. C. Methods Mol. Biol. 2002, 208, 145-164.
7. King, W.; Proffitt, J.; Morrison, L.; Piper, J.; Lane, D.; Seelig, S. Mol. Diagn. 2000, 5, 309-319.
8. Sakallah, S. A. Biotechnol. Annu. Rev. 2000, 6, 141-161.
9. Eschenmoser, A. Science 1999, 284, 2118-2124.
10. Benner, S. A.; Ellington, A. D. Bioorg. Chem. Front. 1990, 1, 1-70.
11. Szostak, J. W. Trends Biochem. Sci. 1992, 17, 89-93.
12. Lazcano, A.; Miller, S. L. Cell 1996, 85, 793-798.
13. Kool, E. T. Acc. Chem. Res. 2002, 35, 936-943.
14. Henry, A. A.; Romesberg, F. E. Curr. Opin. Chem. Biol. 2003, 7, 727-733.
15. Rappaport, H. P. Nucleic Acids Res. 1988, 16, 7253-7267.
16. Minakawa, N.; Kojima, N.; Hikishima, S.; Sasaki, T.; Kiyosue, A.; Atsumi, N.; Ueno, Y.; Matsuda, A. J. Am. Chem. Soc. 2003, 125, 9970-9982.
17. Liu, H.; Gao, J.; Lynch, S. R.; Saito, Y. D.; Maynard, L.; Kool, E. T. Science 2003, 302, 868-871.
18. (a) Scopes, D. I.; Barrio, J. R.; Leonard, N. J. Science 1977, 195, 296-268.
19. (b) Leonard, N. J. Biopolymers 1985, 24, 9-28.
20. Gao, J.; Liu, H.; Kool, E. T. J. Am. Chem. Soc. 2004, 126, 11826-11831.
21. Geyer, C. R.; Battersby, T. R.; Benner, S. A. Structure 2003, 11, 1485-1498.
22. Liu, H.; Gao, J.; Maynard, L.; Saito, Y. D.; Kool, E. T. J. Am. Chem. Soc. 2004, 126, 1102-1109.
23. Pilch, D. S.; Levenson, C.; Shafer, R. H. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 1942-1946.
24. Liu, H.; Lynch, S. R.; Kool, E. T. J. Am. Chem. Soc. 2004, 126, 6900-6905.
25. (a) van de Sande, J. H.; Ramsing, N. B.; Germann, M. W.; Elhorst, W.; Kalisch, B. W.; von Kitzing, E.; Pon, R. T.; Clegg, R. C.; Jovin, T. M. Science 1988, 241, 551-557.
26. (b) Sugiyama, H.; Ikeda, S.; Saito, I. J. Am. Chem. Soc. 1996, 118 , 9994-9995.
27. (c) Rippe, K.; Jovin, T. M. Methods Enzymol. 1992, 211, 199-220.
28. Kool, E. T.; Morales, J. C.; Guckian, K. M. Angew. Chem., Int. Ed. 2000, 39, 990-1009.
29. Leng, M.; Felsenfeld, G. J. Mol. Biol. 1966, 15, 455-466.
30. Plum, G. E.; Breslauer, K. J. Curr. Opin. Struct. Biol. 1995, 5, 682-690.
31. D'Souza, D. J.; Kool, E. T. Bioorg. Med. Chem. Lett. 1994, 4, 965-970.
32. Kool, E. T. Acc. Chem. Res. 1998, 31, 502-510.
33. Xodo, L. E.; Manzini, G.; Quadrifoglio, F. Nucleic Acids Res. 1990, 18, 3557-3564.