-
1
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S., Eppig,J.T. et al. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
2
-
-
0036191191
-
A cluster validity framework for genome expression data
-
Azuaje,F. (2002) A cluster validity framework for genome expression data. Bioinformatics, 18, 319-320.
-
(2002)
Bioinformatics
, vol.18
, pp. 319-320
-
-
Azuaje, F.1
-
3
-
-
0032728081
-
Clustering gene expression patterns
-
Ben-Dor,A., Shamir,R. and Yakhini,Z. (1999) Clustering gene expression patterns. J. Comput. Biol., 6, 281-297.
-
(1999)
J. Comput. Biol.
, vol.6
, pp. 281-297
-
-
Ben-Dor, A.1
Shamir, R.2
Yakhini, Z.3
-
4
-
-
0037709918
-
Supervised clustering of genes
-
research
-
Dettlin,M. and Bühlmann,P. (2002) Supervised clustering of genes. Genome Biol., 3, research0069.1-0069.15.
-
(2002)
Genome Biol.
, vol.3
-
-
Dettlin, M.1
Bühlmann, P.2
-
5
-
-
0037263812
-
MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
-
Doniger,S.W., Salomonis,N., Dahlquist,K.D., Vranizan,K., Lawlor,S.C. and Conklin,B.R. (2003) MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol., 4, R7.
-
(2003)
Genome Biol.
, vol.4
-
-
Doniger, S.W.1
Salomonis, N.2
Dahlquist, K.D.3
Vranizan, K.4
Lawlor, S.C.5
Conklin, B.R.6
-
6
-
-
0036087548
-
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
-
Dwight,S.S., Harris,M.A., Dolinski,K., Ball,C.A., Binkley,G., Christie,K.R., Fisk,D.G., Issel-Tarver,L., Schroeder,M., Sherlock,G. et al. (2002) Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res., 30, 69-72.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 69-72
-
-
Dwight, S.S.1
Harris, M.A.2
Dolinski, K.3
Ball, C.A.4
Binkley, G.5
Christie, K.R.6
Fisk, D.G.7
Issel-Tarver, L.8
Schroeder, M.9
Sherlock, G.10
-
7
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen,M.B., Spellman,P.T., Brown,P.O. and Botstein,D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
8
-
-
0036798238
-
Judging the quality of gene expression-based clustering methods using gene annotation
-
Gibbons,F.D. and Roth,F.R. (2002) Judging the quality of gene expression- based clustering methods using gene annotation. Genome Res., 12, 1574-1581.
-
(2002)
Genome Res.
, vol.12
, pp. 1574-1581
-
-
Gibbons, F.D.1
Roth, F.R.2
-
9
-
-
0035676057
-
On clustering validation techniques
-
Halkidi,M., Batistakis,Y. and Vazirgiannis,M. (2001) On clustering validation techniques. J. Intell. Inf. Syst., 17, 107-145.
-
(2001)
J. Intell. Inf. Syst.
, vol.17
, pp. 107-145
-
-
Halkidi, M.1
Batistakis, Y.2
Vazirgiannis, M.3
-
10
-
-
0035704901
-
Profiling gene expression using Onto-Express
-
Khatri,P., Draghici,S., Ostermeier,G.C. and Krawetz,S.A. (2002) Profiling gene expression using Onto-Express. Genomics, 79, 266-270.
-
(2002)
Genomics
, vol.79
, pp. 266-270
-
-
Khatri, P.1
Draghici, S.2
Ostermeier, G.C.3
Krawetz, S.A.4
-
11
-
-
0035022821
-
Use of keyword hierarchies to interpret gene expression patterns
-
Masys,D.R., Welsh,J.B., Fink,J.L., Gribskov,M., Klacansky,I. and Corbeil,J. (2001) Use of keyword hierarchies to interpret gene expression patterns. Bioinformatics, 17, 319-326.
-
(2001)
Bioinformatics
, vol.17
, pp. 319-326
-
-
Masys, D.R.1
Welsh, J.B.2
Fink, J.L.3
Gribskov, M.4
Klacansky, I.5
Corbeil, J.6
-
12
-
-
0013203966
-
FunSpec: A web-based cluster interpreter for yeast
-
Robinson,M.D., Grigull,J., Mohammad,N. and Hughes,T.R. (2002) FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics, 3, 35.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 35
-
-
Robinson, M.D.1
Grigull, J.2
Mohammad, N.3
Hughes, T.R.4
-
13
-
-
0004195255
-
-
Wiley-Interscience publication, New York
-
Swamy,M.N.S. and Thulasiraman,K. (1981) Graphs, Networks, and Algorithms. Wiley-Interscience publication, New York.
-
(1981)
Graphs, Networks, and Algorithms
-
-
Swamy, M.N.S.1
Thulasiraman, K.2
-
14
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo,P., Slonim,D., Mesirov,J., Zhu,Q., Kitareewan,S., Dmitrovsky,E., Lander,E.S. and Golub,T.R. (1999) Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc. Natl Acad. Sci. USA, 96,2907-2912.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
15
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie,S., Hughes,J.D., Campbell,M.J., Cho,R.J. and Church,G.M. (1999) Systematic determination of genetic network architecture. Nat. Genet., 22, 281-285.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
16
-
-
0034887203
-
The Gene Ontology Consortium Creating the Gene Ontologyresource: Design and implementation
-
The Gene Ontology Consortium (2001) Creating the Gene Ontologyresource: design and implementation. GenomeRes., 11, 1425-1433.
-
(2001)
Genome Res.
, vol.11
, pp. 1425-1433
-
-
-
17
-
-
0035532141
-
Estimating the number of clusters in a data set via the Gap statistic
-
Tibshirani,R., Walther,G. and Hastie,T. (2001) Estimating the number of clusters in a data set via the Gap statistic. J. R. Statist. Soc. B, 63, 411-423.
-
(2001)
J. R. Statist. Soc. B
, vol.63
, pp. 411-423
-
-
Tibshirani, R.1
Walther, G.2
Hastie, T.3
-
18
-
-
0035024021
-
Validating clustering for gene expression data
-
Yeung,K.Y., Haynor,D.R. and Ruzzo,W.L. (2001) Validating clustering for gene expression data. Bioinformatics, 17, 309-318.
-
(2001)
Bioinformatics
, vol.17
, pp. 309-318
-
-
Yeung, K.Y.1
Haynor, D.R.2
Ruzzo, W.L.3
-
19
-
-
0038175144
-
GoMiner: A resource for biological interpretation of genomic and proteomic data
-
Zeeberg,B.R., Feng,W., Wang,G., Wang,M.D., Fojo,A.T., Sunshine,M., Narasimhan,S., Kane,D.W., Reinhold,W.C., Lababidi,S. et al. (2003) GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol., 4, R28.
-
(2003)
Genome Biol.
, vol.4
-
-
Zeeberg, B.R.1
Feng, W.2
Wang, G.3
Wang, M.D.4
Fojo, A.T.5
Sunshine, M.6
Narasimhan, S.7
Kane, D.W.8
Reinhold, W.C.9
Lababidi, S.10
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