VisCoSe: Visualization and comparison of consensus sequences

Bioinformatics

Volumn 20, Issue 3, 2004, Pages 433-435

  Spitzer, Michael ^a   Fuellen, Georg ^a   Cullen, Paul ^b   Lorkowski, Stefan ^b  

^a UNIVERSITY HOSPITAL MÜNSTER   (Germany)

^b UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CALCULATION; COMPUTER INTERFACE; CONSENSUS SEQUENCE; GENETIC CONSERVATION; HISTOGRAM; INFORMATION SYSTEM; INTERNET; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

EID: 1342309170     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg444     Document Type: Article

References (6)

1. Katoh,K., Misawa,K., Kuma,K. and Miyata,T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res., 302, 3059-3066.
2. Morgenstern,B. (1999) DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15, 211-218.
3. Schneider,T.D. and Stephens,R.M. (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res., 18, 6097-6100.
4. Schug,J., Diskin,S., Mazzarelli,J., Brunk,B.P. and Stoeckert,C.J. (2002) Predicting gene ontology functions from ProDom and CDD protein domains. Genome Res., 12, 648-655.
5. Thompson,J.D., Higgins,D.G. and Gibson,T.J (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
6. Walker,J.E., Saraste,M., Runswick,M.J. and Gay,N.J. (1982) Distantly related sequences in the alpha-and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J., 1, 945-951.