Molecular phylogeny and biogeography of the Malagasy and South Asian cichlids (Teleostei: Perciformes: Cichlidae)

Molecular Phylogenetics and Evolution

Volumn 30, Issue 3, 2004, Pages 599-614

  Sparks, John S ^a  

^a DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CICHLIDAE; ETROPLUS; OXYLAPIA; PARATILAPIA; PARETROPLUS; PERCIFORMES; PISCES; PTYCHOCHROMIS; PTYCHOCHROMOIDES; TELEOSTEI;

EID: 1342290045     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(03)00225-2     Document Type: Article

References (69)

1. Allgayer, R., 1996. Description d'une espèce nouvelle du genre Paretroplus Bleeker (Teleostei: Cichlidae) de Madagascar. Rev. Fr. Cichlidophiles 159, 6-20.
2. Allgayer, R., 1998. Descriptions de Lamena nourissati sp. n. genre et espèce nouveaux, endemiques de Madagascar (Teleostei: Etroplinae). Rev. Fr. Cichlidophiles 179, 7-17.
3. Bremer, K., 1988. The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42, 795-803.
4. Bremer, K., 1995. Branch support and tree stability. Cladistics 10, 295-304.
5. Cichocki, F.P., 1976. Cladistic history of cichlid fishes and reproductive strategies of the American genera Acarichthys, Biotodoma, and Geophagus. vol. 1, Unpublished Ph.D. Thesis, University of Michigan, Ann Arbor.
6. De Rijk, P., Van de Peer, Y., Chapelle, S., De Wachter, R., 1994. Database on the structure of large ribosomal subunit RNA. Nucleic Acids Res. 22, 3495-3501.
7. Farias, I.P., Orti, G., Sampaio, I., Schneider, H., Meyer, A., 1999. Mitochondrial DNA phylogeny of the family Cichlidae: monophyly and fast evolution of the Neotropical assemblage. J. Mol. Evol. 48, 703-711.
8. Farias, I.P., Orti, G., Sampaio, I., Schneider, H., Meyer, A., 2001. The cytochrome b gene as a phylogenetic marker: the limits of resolution for analyzing relationships among cichlid fishes. J. Mol. Evol. 53, 89-103.
9. Farris, J.S., 1989. The retention index and the rescaled consistency index. Cladistics 5, 417-419.
10. Farris, J.S., Källersjö, M., Kluge, A.G., Bult, C., 1994. Testing significance of incongruence. Cladistics 10, 315-319.
11. Farris, J.S., Albert, V.A., Källersjö, M., Lipscomb, D., Kluge, A.G., 1996. Parsimony jackknifing outperforms neighbor-joining. Cladistics 12, 99-124.
12. Folmer, O., Black, M., Hoeh, W., Lutz, R., Vrijenhoek, R., 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotech. 3, 294-299.
13. Gottfried, M.D., Krause, D.W., 1994. Late Cretaceous fishes from Madagascar: a first look. J. Vert. Paleont. 14, 26A.
14. Gottfried, M.D., Krause, D.W., 1998. First record of gars (Lepisosteidae, Actinopterygii) on Madagascar: late Cretaceous remains from the Mahajunga basin. J. Vert. Paleont. 18, 275-279.
15. Gottfried, M.D., Randriamiarimanana, L.L., Rabarison, J.A., Krause, D.W., 1998. Late Cretaceous fish from Madagascar: implications for Gondwanan biogeography. In: J. Almond, J., Anderson, J., Booth, P., Chinsamy-Turan, A., Cole, D., De Wit, M.J., Rubridge, B., Smith, R., Van Bever Donker, J., Storey, B.C. (Eds.), Gondwana 10: Event Stratigraphy of Gondwana. Special Abstracts Issue. J. Afr. Earth Sci. 27, p. 91.
16. Graf, D.L., 2000. Sequence Monkey v. 2.9.1. University of Michigan, Ann Arbor, Michigan. Available from 〈http://www.members.tripod.com/ sequence_monkey〉.
17. Grande, L., Cavender, T.M., 1991. Description and phylogenetic reassessment of the monotypic Ostariostomidae (Teleostei). J. Vert. Paleont. 11, 405-416.
18. Greenwood, P.H., 1960. Fossil denticipitid fishes from East Africa. Bull. Am. Mus. Nat. Hist. (Geol.) 5, 1-11.
19. Greenwood, P.H., 1974. Review of the Cenozoic freshwater fish faunas in Africa. Ann. Geol. Survey Egypt 4, 211-232.
20. Greenwood, P.H., Patterson, C., 1967. A fossil osteoglossoid fish from Tanzania (E. Africa). J. Linn. Soc. (Zool.) 47, 211-223.
21. Guttel, R.R., Fox, G.E., 1988. A compilation of large subunit rRNA sequences presented in a structural format. Nucleic Acids Res. 16S, r175-r269.
22. Hay, W.W., De Conto, R.M., Wold, C.N., Wilson, K.M., Voight, S., Shulz, M., Wold, A.R., Dullo, W.-C., Ronov, A.B., Balukhovsky, A.N., Söding, E., 1999. Alternative global Cretaceous paleogeography. In: Barrera, E., Johnson, C.C. (Eds.), Evolution of the Cretaceous Ocean-climate System, Geol. Soc. Am., Special Paper 332, pp. 1-47.
23. Kaufman, L.S., Liem, K.F., 1982. Fishes of the suborder Labroidei (Pisces: Perciformes): phylogeny, ecology, and evolutionary significance. Breviora 472, 1-19.
24. Kiener, A., Maugé, M., 1966. Contribution à l'étude systématique et écologique des poissons Cichlīdae endémiques de Madagascar. Mém. Mus. Natn. Hist. Nat. Paris 40, 51-99.
25. Kluge, A.G., Farris, J.S., 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18, 1-32.
26. Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Paabo, S., Villablanca, F.X., Wilson, A.C., 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA 86, 6196-6200.
27. Kornfield, I., Smith, P.F., 2000. African cichlid fishes: model systems for evolutionary biology. Annu. Rev. Ecol. Syst. 31, 163-196.
28. Krause, D.W., Prasad, G.V.R., von Koenigswald, W., Sahni, A., Grine, F.E., 1997a. Cosmopolitanism among Gondwanan late Cretaceous mammals. Nature 390, 504-507.
29. Krause, D.W., Hartman, J.H., Wells, N.A., 1997b. Late Cretaceous vertebrates from Madagascar: implications for biotic change in deep time. In: Goodman, S.M., Patterson, B.D. (Eds.), Natural Change and Human Impact in Madagascar. Smithsonian Institution Press, Washington, pp. 3-43.
30. Kullander, S.O., 1998. A phylogeny and classification of the South American Cichlidae (Teleostei: Perciformes). In: Malabarba, L.R., Reis, R.E., Vari, R.P., Lucena, Z.M., Lucena, C.A.S. (Eds.), Phylogeny and Classification of Neotropical fishes, EDIPUCRS. Porto Alegre, Brasil, pp. 461-498.
31. Liem, K.F., Greenwood, P.H., 1981. A functional approach to the phylogeny of the pharyngognath teleosts. Am. Zool. 21, 83-101.
32. Lundberg, J.G., 1998. The temporal context for the diversification of Neotropical fishes. In: Malabarba, L.R., Reis, R.E., Vari, R.P., Lucena, Z.M., Lucena, C.A.S. (Eds.), Phylogeny and Classification of Neotropical fishes, EDIPUCRS. Porto Alegre, Brasil, pp. 49-68.
33. Maddison, W.P., Maddison, D.R., 1997. MacClade: Analysis of Phylogeny and Character Evolution, version 3.07. Sinauer Associates, Inc., Sunderland, MA.
34. Murphy, W.J., Collier, G.E., 1997. A molecular phylogeny for aplocheiloid fishes (Atherinomorpha, Cyprinodontiformes): the role of vicariance and the origins of annualism. Mol. Biol. Evol. 14, 790-799.
35. Murray, A.M., 2000. Eocene cichlid fishes from Tanzania, East Africa. J. Vert. Paleont. 20, 651-664.
36. Murray, A.M., 2001. The fossil record and biogeography of the Cichlidae (Actinopterygii: Labroidei). Biol. J. Linn. Soc. 78, 517-532.
37. Oliver, M.K., 1984. Systematics of African cichlid fishes: determination of the most primitive taxon, and studies on the haplochromines of Lake Malawi (Teleostei: Cichlidae). Unpublished Ph.D. Thesis, Yale University, New Haven.
38. Orti, G., Petry, P., Porto, J.I.R., Jégu, M., Meyer, A., 1996. Patterns of nucleotide change in mitochondrial ribosomal RNA genes and the phylogeny of Piranhas. J. Mol. Evol. 42, 169-182.
39. Palumbi, S.R., 1996. Nucleic acids II: the polymerase chain reaction. In: Hillis, D.M., Moritz, C., Mable, B.K. (Eds.), Molecular Systematics, second ed. Sinauer, Sunderland, MA, pp. 205-247.
40. Patterson, C., 1993a. An overview of the early fossil record of acanthomorphs. Bull. Mar. Sci. 52, 29-59.
41. Patterson, C., 1993b. Osteichthys: Teleostei. In: Benton, M.J. (Ed.), The Fossil Record, vol. 2. Chapman & Hall, London, pp. 621-656.
42. Pellegrin, J., 1904. Contribution à l'étude anatomique, biologique, et taxonomique des poissons de la famille des Cichlidés. Mem. Soc. Zool. Fr. 16, 41-400.
43. Rabinowitz, P.D., Coffin, M.F., Falvey, D., 1983. The separation of Madagascar and Africa. Science 220, 67-69.
44. Reinthal, P.N., Stiassny, M.L.J., 1991. The freshwater fishes of Madagascar: a study of an endangered fauna with recommendations for a conservation strategy. Conserv. Biol. 5, 231-243.
45. Reinthal, P.N., Stiassny, M.L.J., 1997. Revision of the Madagascan genus Ptychochromoides (Teleostei: Cichlidae), with description of a new species. Ichthyol. Explor. Freshwaters 7, 353-368.
46. Scotese, C.R., 1997. Paleomap Project, seventh ed. Arlington, TX. URL: http://www.scotese.com.
47. Sorenson, M.D., 1999. TreeRot, v. 2. Boston University, Boston Massachusetts. Available from 〈http://mightyduck.bu.edu/TreeRot〉.
48. Sparks, J.S., 1998. Phylogenetic relationships and biogeography of the Malagasy Cichlidae. American Society of Ichthyologists and Herpetologists, 78th Annual Meeting, Guelph, Ontario, Canada, No. 265 [published abstract].
49. Sparks, J.S., 2001. Phylogeny and biogeography of the Malagasy and South Asian cichlid fishes (Teleostei: Perciformes: Cichlidae), including a survey of the freshwater fishes of Madagascar. Unpublished Ph.D. Thesis, University of Michigan, Ann Arbor.
50. Sparks, J.S., 2002a. Ptychochromis inornatus, a new cichlid (Teleostei: Cichlidae) from northwestern Madagascar, with a discussion of intrageneric variation in Ptychochromis. Copeia 2002 (1), 120-130.
51. Sparks, J.S., 2002b. Paretroplus dambabe, a new cichlid fish (Teleostei: Cichlidae) from northwestern Madagascar, with a discussion on the status of P. petiti. Proc. Biol. Soc. Wash. 115, 546-563.
52. Sparks, J.S., Reinthal, P.N., 1997. Phylogenetic relationships of Malagasy cichlids (Teleostei: Cichlidae) inferred from molecular sequence data and morphological evidence. American Society of Ichthyologists and Herpetologists, 77th Annual Meeting, Seattle, Washington, p. 276 [published abstract].
53. Sparks, J.S., Reinthal, P.N., 1999. Paretroplus maromandia, a new cichlid fish from the northwest of Madagascar. Occ. Pap. Mus. Zool. Univ. Michigan 727, 1-18.
54. Sparks, J.S., Reinthal, P.N., 2001. A new species of Ptychochromoides from southeastern Madagascar (Teleostei: Cichlidae), with comments on monophyly and relationships of the ptychochromine cichlids. Ichthy. Explor. Freshwaters 12, 115-132.
55. Sparks, J.S., Stiassny, M.L.J., 2003. Introduction to the freshwater fishes. In: Goodman, S.M., Benstead, J.P. (Eds.), The Natural History of Madagascar. University of Chicago Press, Chicago, pp. 849-863.
56. Stiassny, M.L.J., 1981. The phyletic status of the family Cichlidae. Neth. J. Zool. 31, 275-314.
57. Stiassny, M.L.J., 1990. Tylochromis, relationships and the phylogenetic status of the African Cichlidae. Am. Mus. Novit. 2993, 1-14.
58. Stiassny, M.L.J., 1991. Phylogenetic intrarelationships of the family Cichlidae: an overview. In: Keenleyside, M.H.A. (Ed.), Cichlid Fishes: Behaviour, Ecology, and Evolution. Chapman & Hall, London, pp. 1-35.
59. Stiassny, M.L.J., Jensen, J.S., 1987. Labroid intrarelationships revisited: morphological complexity, key innovations, and the study of comparative diversity. Bull. Mus. Comp. Zool. 151, 269-319.
60. Stiassny, M.L.J., Raminosoa, N., 1994. The fishes of the inland waters of Madagascar. In: Teugels, G.G., Guégen, J.-F., Albaret, J.-J. (Eds.), Biological Diversity in African Fresh-and Brackish Water Fishes, Geographical Overviews, Symposium PARADI. Ann. Mus. R. Afr. Centr. Zool., vol. 275, pp. 133-148.
61. Stiassny, M.L.J., Chakrabarty, P., Loiselle, P.V., 2001. Relationships of the Madagascan cichlid genus Paretroplus Bleeker 1868, with description of a new species from the Betsiboka River drainage of northwestern Madagascar. Ichthy. Explor. Freshwaters 12, 29-40.
62. Storey, B.C., 1995. The role of mantle plumes in continental breakup: case histories from Gondwanaland. Nature 377, 301-308.
63. Storey, B.C., Mahoney, J.J., Saunders, A.D., Duncan, R.A., Kelley, S.P., Coffin, M.F., 1995. Timing of hot spot-related volcanism and the breakup of Madagascar and India. Science 267, 852-855.
64. Streelman, J.T., Karl, S.A., 1997. Reconstructing labroid evolution with single-copy nuclear DNA. Proc. R. Soc. Lond. B 264, 1011-1020.
65. Streelman, J.T., Zardoya, R., Meyer, A., Karl, S.A., 1998. Multi-locus phylogeny of cichlid fishes (Pisces: Perciformes): evolutionary comparison of microsatellite and single-copy nuclear loci. Mol. Biol. Evol. 15, 798-808.
66. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882, Available from 〈http:// ncbi.nlm.nih.gov〉.
67. Thompson, J.D., Higgins, D.G., Gibson, T.J., 1994. CLUSTAL-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
68. Van Couvering, J.A.H., 1982. Fossil cichlid fish of Africa. Special Papers in Paleontology No. 29, The Palaeontological Association, London, 103 pp.
69. Zardoya, R., Vollmer, D.M., Craddock, C., Streelman, J.T., Karl, S., Meyer, A., 1996. Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of cichlid fishes (Pisces: Perciformes). Proc. R. Soc. Lond. B 263, 1589-1598.