-
1
-
-
33845377127
-
Estimation of effective interresidue contact energies from protein crystal structures: Quasichemical approximation
-
Miyazawa S, Jernigan RL: Estimation of effective interresidue contact energies from protein crystal structures: quasichemical approximation. Macromolecules 1985, 18: 34-552.
-
(1985)
Macromolecules
, vol.18
, pp. 534-552
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
2
-
-
0029919190
-
Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading
-
Miyazawa S, Jernigan RL: Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading. J Mol Biol 1996, 256: 23-644.
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 623-644
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
3
-
-
0033566614
-
An empirical energy potential with a reference state for protein fold and sequence recognition
-
Miyazawa S, Jernigan RL: An empirical energy potential with a reference state for protein fold and sequence recognition. Proteins 1999, 36(3):357-369.
-
(1999)
Proteins
, vol.36
, Issue.3
, pp. 357-369
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
4
-
-
0029942661
-
Structure-derived potentials and protein simulations
-
Jernigan RL, Bahar I: Structure-derived potentials and protein simulations. Curr Opin Struct Biol 1996, 6: 95-209.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 195-209
-
-
Jernigan, R.L.1
Bahar, I.2
-
5
-
-
7044220745
-
Nature of Driving Force for Protein Folding: A Result From Analyzing the Statistical Potential
-
Li H, Tang C, Wingreen NS: Nature of Driving Force for Protein Folding: A Result From Analyzing the Statistical Potential. Phys Rev Lett 1997, 79:765-768.
-
(1997)
Phys. Rev. Lett.
, vol.79
, pp. 765-768
-
-
Li, H.1
Tang, C.2
Wingreen, N.S.3
-
6
-
-
85035296424
-
Grouping of residues based on their contact interactions
-
Wang J, Wang W: Grouping of residues based on their contact interactions. Phys Rev E Stat Nonlin Soft Matter Phys 2002, 65(4 Pt 1):041911.
-
(2002)
Phys. Rev. E. Stat. Nonlin. Soft. Matter Phys.
, vol.65
, Issue.4 PART 1
, pp. 041911
-
-
Wang, J.1
Wang, W.2
-
7
-
-
0037022302
-
Combinatorial computational method gives new picomolar ligands for a known enzyme
-
Grzybowski BA, Ishchenko AV, Kim CY, Topalov G, Chapman R, Christianson DW, Whitesides GM, Shakhnovich EI: Combinatorial computational method gives new picomolar ligands for a known enzyme. Proc Natl Acad Sci 2002, 99:1270-1273.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 1270-1273
-
-
Grzybowski, B.A.1
Ishchenko, A.V.2
Kim, C.Y.3
Topalov, G.4
Chapman, R.5
Christianson, D.W.6
Whitesides, G.M.7
Shakhnovich, E.I.8
-
8
-
-
0000228203
-
A model of evolutionary change in proteins
-
Edited by: Dayhoff MO. Washington, DC: National Biomedical Research Foundation
-
Dayhoff MO, Schwartz RM, Orcutt BC: A model of evolutionary change in proteins. In Atlas of Protein Sequence and Structure Edited by: Dayhoff MO. Washington, DC: National Biomedical Research Foundation;; 1978:345-352.
-
(1978)
Atlas of Protein Sequence and Structure
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
9
-
-
0026458378
-
Amino Acid Substitution Matrices from Protein Blocks
-
Henikoff S, Henikoff JG: Amino Acid Substitution Matrices from Protein Blocks. Proc Natl Acad Sci 1992, 89: 0915-10919.
-
(1992)
Proc. Natl. Acad. Sci.
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
10
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm U, Sander C: Enlarged representative set of protein structures. Protein Sci 1994, 3:522-524.
-
(1994)
Protein Sci.
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
11
-
-
0023660653
-
Prediction of protein secondary structure and active sites using the alignment of homologous sequences
-
Zvelebil MJ, Barton GJ, Taylor WR, Sternberg MJ: Prediction of protein secondary structure and active sites using the alignment of homologous sequences. J Mol Biol 1987, 195: 57-961.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 957-961
-
-
Zvelebil, M.J.1
Barton, G.J.2
Taylor, W.R.3
Sternberg, M.J.4
-
12
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle RF: A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982, 157: 05-132.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
14
-
-
0023645034
-
Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins
-
Cornette JL, Cease KB, Margalit H, Spouge JL, Berzofsky JA, DeLisi C: Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins. J Mol Biol 1987, 195:659-685.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 659-685
-
-
Cornette, J.L.1
Cease, K.B.2
Margalit, H.3
Spouge, J.L.4
Berzofsky, J.A.5
DeLisi, C.6
-
15
-
-
0017926896
-
Influence of water on protein structure. An analysis of the preferences of amino acid residues for the inside or outside and for specific conformations in a protein molecule
-
Wertz DH, Scheraga HA: Influence of water on protein structure. An analysis of the preferences of amino acid residues for the inside or outside and for specific conformations in a protein molecule. Macromolecules 1978, 11:9-15.
-
(1978)
Macromolecules
, vol.11
, pp. 9-15
-
-
Wertz, D.H.1
Scheraga, H.A.2
-
16
-
-
0036290642
-
Wavelet transforms for the characterization and detection of repeating motifs
-
Murray KB, Gorse D, Thornton JM: Wavelet transforms for the characterization and detection of repeating motifs. J Mol Biol 2002, 316:341-363.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 341-363
-
-
Murray, K.B.1
Gorse, D.2
Thornton, J.M.3
-
17
-
-
0033665668
-
Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties
-
Kim J, Moriyama EN, Warr CG, Clyne PJ, Carlson JR: Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties. Bioinformatics 2000, 16:767-775.
-
(2000)
Bioinformatics
, vol.16
, pp. 767-775
-
-
Kim, J.1
Moriyama, E.N.2
Warr, C.G.3
Clyne, P.J.4
Carlson, J.R.5
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