Array-based mutation detection of BRCA1 using direct probe/target hybridization

Analytical Biochemistry

Volumn 337, Issue 2, 2005, Pages 332-337

  Yim, Seong Chun ^a   Park, Hyun Gyu ^a   Chang, Ho Nam ^a   Cho, Dae Yeon ^b  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^b Doo San Engineering Center   (South Korea)

Author keywords

Biochip; BRCA; DNA microarray; Mutation detection; Oligonucleotide

Indexed keywords

BIOCHIPS; GENES; OLIGONUCLEOTIDES; PROBES;

AMPLIFICATION PRODUCTS; BRCA; CHIP-BASED ANALYSIS; DNA MICRO-ARRAY; MODIFIED NUCLEOTIDES; MUTATION DETECTION; OLIGONUCLEOTIDE CHIP; SUSCEPTIBILITY GENES;

POLYMERASE CHAIN REACTION;

ALLELE; ANALYTIC METHOD; ARTICLE; BREAST CANCER; CANCER DIAGNOSIS; CANCER GENETICS; CANCER SUSCEPTIBILITY; DNA HYBRIDIZATION; DNA MICROARRAY; GENE MUTATION; GENOMICS; GENOTYPE; HUMAN; HYBRIDIZATION; NORMAL HUMAN; ONCOGENE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; WILD TYPE;

EID: 13244257118     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ab.2004.11.034     Document Type: Article

References (16)

1. Y. Miki, J. Swensen, D. Shattuckeidens, P.A. Futreal, K. Harshman, S. Tavtigian, Q.Y. Liu, C. Cochran, L.M. Bennett, W. Ding, R. Bell, J. Rosenthal, C. Hussey, T. Tran, M. Mcclure, C. Frye, T. Hattier, R. Phelps, A. Huagenstrano, H. Katcher, K. Yakumo, Z. Gholami, D. Shaffer, S. Stone, S. Bayer, C. Wray, R. Bogden, P. Dayananth, J. Ward, P. Tonin, S. Narod, P.K. Bristow, F.H. Norris, L. Helvering, P. Morrison, P. Rostech, M. Lai, J.C. Barrett, C. Lewis, S. Neuhausen, L. Cannonalbright, D. Goldgar, R. Wiseman, A. Kamb, and M.H. Skolnick A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1 Science 266 1994 66 71
2. G.M. Lenoir, H. Lynch, P. Watson, T. Conway, J. Lynch, S. Narod, and J. Feunteun Familial breast-ovarian cancer locus on chromosome 17q12-q23 Lancet 338 1991 82 83
3. D.F. Easton, D.T. Bishop, D. Ford, and G.P. Crockford Genetic-linkage analysis in familial breast and ovarian cancer. Results from 214 families Am. J. Hum. Genet. 52 1993 678 701
4. S. Rowell, B. Newman, J. Boyd, and M.C. King Inherited predisposition to breast and ovarian cancer Am. J. Hum. Genet. 55 1994 861 865
5. L.H. Castilla, F.J. Couch, and M.R. Erdos Mutations in the BRCA1 gene in families with early onset breast and ovarian cancer Nat. Genet. 8 1994 387 391
6. L.S. Friedman, E.A. Ostermeyer, C.L. Szabo, P. Dowd, E.D. Lynch, S.E. Rowell, and M.C. King Confirmation of BRCA1 by analysis of germline mutations linked to breast and ovarian cancer in ten families Nat. Genet. 8 1994 399 404
7. J. Simard, P. Tonin, F. Durocher, K. Morgan, J. Rommens, S. Gingras, C. Samson, J.F. Leblanc, C. Belanger, F. Dion, Q. Liu, M. Skolnick, D. Goldgar, D. Shattuckeidens, F. Labrie, and S.A. Narod Common origins of BRCA1 in Canadian breast and ovarian cancer families Nat. Genet. 8 1994 392 398
8. F.B.L. Hogervorst, R.S. Cornelis, M. Bout, M. Vanvliet, J.C. Oosterwijk, R. Olmer, B. Bakker, J.G.M. Klijin, H.F.A. Vasen, H. Meifersheijboer, F.H. Menko, C.J. Cornelisse, J.T. Dendunnen, P. Devilee, and G.J.B. Vanommen Rapid detection of BRCA1 mutations by the protein truncation test Nat. Genet. 10 1995 208 212
9. S.A. Gayther, W. Warren, S. Mazoyer, P.A. Russell, P.A. Harrington, M. Chiano, S. Seal, R. Hamoudi, E.J. Vanrensburg, A.M. Dunning, R. Love, G. Evans, D. Easton, D. Clayton, M.R. Stratton, and B.A.J. Ponder Germline mutations of the BRCA1 gene in breast and ovarian cancer families provide evidence for genotype-phenotype correlation Nat. Genet. 11 1995 428 433
10. S.A. Gayther, P.A. Harrington, P.A. Russell, G. Kharkevich, R.F. Garkavtseva, B.A.J. Ponder, D.T. Bishop, J. Carmichael, W.P. Collins, D. Cox, D. Easton, G.R. Fraser, D.G. Lowe, J. Mackay, J.H. Shepherd, and C. Steel Rapid detection of regionally clustered germ-line BRCA1 mutations by multiplex heteroduplex analysis Am. J. Hum. Genet. 58 1996 451 456
11. D.J. Lockhart, H.L. Dong, M.C. Byrne, M.T. Follettie, M.V. Gallo, M.S. Chee, M. Mittmann, C.W. Wang, M. Kobayashi, H. Horton, and E.L. Brown Expression monitoring by hybridization to high-density oligonucleotide arrays Nat. Biotechnol. 14 1996 1675 1680
12. M. Schena, D. Shalon, R. Heller, A. Chai, P.O. Brown, and R.W. Davis Parallel human genome analysis: microarray-based expression monitoring of 1000 genes Proc. Natl. Acad. Sci. USA 93 1996 10614 10619
13. E.M. Southern DNA chips: analyzing sequence by hybridization to oligonucleotides on a large scale Trends Genet. 93 1996 13 16
14. J.H. Seo, D.Y. Cho, S.H. Ahn, K.S. Yoon, C.S. Kang, H.M. Cho, H.S. Lee, J.J. Choe, C.W. Choi, B.S. Kim, S.W. Shin, Y.H. Kim, J.S. Kim, G.S. Son, J.B. Lee, and B.H. Koo BRCA1 and BRCA2 germline mutations in Korean patients with sporadic breast cancer Hum. Mutat. 24 4 2004 350
15. S.H. Ahn, U.K. Hwang, B.S. Kwak, H.S. Yoon, B.K. Ku, H.J. Kang, J.S. Kim, B.K. Ko, C.D. Ko, K.S. Yoon, D.Y. Cho, J.S. Kim, and B.H. Son Prevalence of BRCA1 and BRCA2 mutations in Korean breast cancer patients J. Korean Med. Sci. 19 2004 269 274
16. S. Waldmuller, P. Freund, S. Mauch, R. Toder, and H.P. Vosberg Low-density DNA microarrays are versatile tools to screen for known mutations in hypertrophic cardiomyopathy Hum. Mutat. 19 2002 560 569