메뉴 건너뛰기




Volumn 54, Issue 1, 2005, Pages 31-50

Mixture model on the variance for the differential analysis of gene expression data

Author keywords

Differential analysis; Gene expression; Microarray data; Mixture model; Simulated microarray data; Variance modelling

Indexed keywords


EID: 12844250727     PISSN: 00359254     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1467-9876.2005.00468.x     Document Type: Article
Times cited : (16)

References (24)
  • 1
    • 0034948896 scopus 로고    scopus 로고
    • A bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
    • Baldi, P. and Long, A. (2001) A bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics, 17, 509-519.
    • (2001) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.2
  • 2
    • 0034598751 scopus 로고    scopus 로고
    • Tissue and cell-specific expression of the p53-target genes: Bax, fas, mdm2 and waf1/p21, before and following ionising irradiation in mice
    • Bouvard, V., Zaitchouk, T., Vacher, M., Duthu, A., Canivet, M., Choisy-Rossi, C., Nieruchalski, M. and May, E. (2000) Tissue and cell-specific expression of the p53-target genes: bax, fas, mdm2 and waf1/p21, before and following ionising irradiation in mice. Oncogene, 19, 649-660.
    • (2000) Oncogene , vol.19 , pp. 649-660
    • Bouvard, V.1    Zaitchouk, T.2    Vacher, M.3    Duthu, A.4    Canivet, M.5    Choisy-Rossi, C.6    Nieruchalski, M.7    May, E.8
  • 3
    • 84984932472 scopus 로고    scopus 로고
    • Exploring the new world of the genome with dna microarrays
    • Brown, P. O. and Botstein, D. (1999) Exploring the new world of the genome with dna microarrays. Nat. Genet., 21, suppl. 1, 33-37.
    • (1999) Nat. Genet. , vol.21 , Issue.SUPPL. 1 , pp. 33-37
    • Brown, P.O.1    Botstein, D.2
  • 4
    • 0035797473 scopus 로고    scopus 로고
    • Tissue specific expression of p53 target genes suggests a key role for killer/dr5 in p53-dependent apoptosis in vivo
    • Burns, T. F., Bernhard, E. J. and El-Deiry, W. S. (2001) Tissue specific expression of p53 target genes suggests a key role for killer/dr5 in p53-dependent apoptosis in vivo. Oncogene, 20, 4601-4612.
    • (2001) Oncogene , vol.20 , pp. 4601-4612
    • Burns, T.F.1    Bernhard, E.J.2    El-Deiry, W.S.3
  • 5
    • 0034526621 scopus 로고    scopus 로고
    • Microarray expression profiling identifies genes with altered expression in hdl-deficient mice
    • Callow, M. J., Dudoit, S., Gong, E. L., Speed, T. P. and Rubin, E. M. (2000) Microarray expression profiling identifies genes with altered expression in hdl-deficient mice. Genome Res., 10, 2022-2029.
    • (2000) Genome Res. , vol.10 , pp. 2022-2029
    • Callow, M.J.1    Dudoit, S.2    Gong, E.L.3    Speed, T.P.4    Rubin, E.M.5
  • 6
    • 84936916896 scopus 로고
    • Robust locally weighted regression and smoothing scatterplots
    • Cleveland, W. (1979) Robust locally weighted regression and smoothing scatterplots. J. Am. Statist. Ass., 74, 829-836.
    • (1979) J. Am. Statist. Ass. , vol.74 , pp. 829-836
    • Cleveland, W.1
  • 7
    • 85132185883 scopus 로고    scopus 로고
    • The estimation of the order of a mixture model
    • Dacunha-Castelle, D. and Gassiat, E. (1997) The estimation of the order of a mixture model. Bernoulli, 3, 279-299.
    • (1997) Bernoulli , vol.3 , pp. 279-299
    • Dacunha-Castelle, D.1    Gassiat, E.2
  • 8
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cdna microarray experiments
    • Dudoit, S., Yang, Y. H., Callow, M. J. and Speed, T. P. (2002) Statistical methods for identifying differentially expressed genes in replicated cdna microarray experiments. Statist. Sin., 12, 111-139.
    • (2002) Statist. Sin. , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.J.3    Speed, T.P.4
  • 10
    • 51249174278 scopus 로고
    • On estimating the number of constituents of a finite mixture of continuous distributions
    • Henna, J. (1985) On estimating the number of constituents of a finite mixture of continuous distributions. Ann. Inst. Statist. Math., 37, 235-240.
    • (1985) Ann. Inst. Statist. Math. , vol.37 , pp. 235-240
    • Henna, J.1
  • 11
    • 0002954754 scopus 로고    scopus 로고
    • Consistent estimation of the order of mixture models
    • Keribin, C. (2000) Consistent estimation of the order of mixture models. Sankhya A, 62, 49-66.
    • (2000) Sankhya A , vol.62 , pp. 49-66
    • Keribin, C.1
  • 13
    • 0030941458 scopus 로고    scopus 로고
    • P53, the cellular gatekeeper for growth and division
    • Levine, A. J. (1997) p53, the cellular gatekeeper for growth and division. Cell, 88, 323-331.
    • (1997) Cell , vol.88 , pp. 323-331
    • Levine, A.J.1
  • 14
    • 0036012343 scopus 로고    scopus 로고
    • Replicated microarray data
    • Lönnstedt, I. and Speed, T. (2002) Replicated microarray data. Statist. Sin., 12, 203-218.
    • (2002) Statist. Sin. , vol.12 , pp. 203-218
    • Lönnstedt, I.1    Speed, T.2
  • 17
    • 0037433040 scopus 로고    scopus 로고
    • Identifying differentially expressed genes using false discovery rate controlling procedures
    • Reiner, A., Yekutieli, D. and Benjamini, Y. (2003) Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics, 19, 368-375.
    • (2003) Bioinformatics , vol.19 , pp. 368-375
    • Reiner, A.1    Yekutieli, D.2    Benjamini, Y.3
  • 18
    • 0001475895 scopus 로고
    • A graphical technique for determining the number of components in a mixture of normals
    • Roeder, K. (1994) A graphical technique for determining the number of components in a mixture of normals. J. Am. Statist. Ass., 89, 487-495.
    • (1994) J. Am. Statist. Ass. , vol.89 , pp. 487-495
    • Roeder, K.1
  • 21
    • 12844251291 scopus 로고    scopus 로고
    • University of Dortmund, Dortmund
    • Schwender, H. (2003) Siggenes. University of Dortmund, Dortmund. (Available from http://www.bioconductor.org/repository/devel/package/html/siggenes.html.)
    • (2003) Siggenes
    • Schwender, H.1
  • 22
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey, J. (2002) A direct approach to false discovery rates. J. R. Statist. Soc. B, 64, 479-498.
    • (2002) J. R. Statist. Soc. B , vol.64 , pp. 479-498
    • Storey, J.1
  • 23
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to ionizing radiation response
    • Tusher, V., Tibshirani, R. and Chu, G. (2001) Significance analysis of microarrays applied to ionizing radiation response. Proc. Natn. Acad. Sci. USA, 98, 5116-5121.
    • (2001) Proc. Natn. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.1    Tibshirani, R.2    Chu, G.3
  • 24
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cdna microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang, Y., Dudoit, S., Luu, P., Lin, D., Peng, V., Ngai, J. and Speed, T. (2002) Normalization for cdna microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30, e15.
    • (2002) Nucleic Acids Res. , vol.30
    • Yang, Y.1    Dudoit, S.2    Luu, P.3    Lin, D.4    Peng, V.5    Ngai, J.6    Speed, T.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.