Intramolecular recombination and deletions in mitochondrial DNA of senescent, a nuclear-gene mutant of Neurospora crassa exhibiting "death" phenotype

Fungal Genetics and Biology

Volumn 42, Issue 2, 2005, Pages 178-190

  D'Souza, Anthony D ^a   Bertrand, Helmut ^b   Maheshwari, Ramesh ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

^b MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

Deletions; mtDNA; Neurospora; Nuclear gene; Recombination; Senescence; senescent

Indexed keywords

DNA FRAGMENT; GENE PRODUCT; MITOCHONDRIAL DNA; MUTANT PROTEIN; RECOMBINANT PROTEIN; REPETITIVE DNA; TRANSCRIPTION FACTOR;

ALLELE; ARTICLE; CORRELATION ANALYSIS; CYTOPLASM; DNA METABOLISM; DNA RECOMBINATION; DNA REPAIR; DNA REPLICATION; FUNGAL GENE; GENE SEQUENCE; HETEROKARYON; MYCELIUM; NEUROSPORA CRASSA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; SENESCENCE;

BASE SEQUENCE; CELL NUCLEUS; CROSSING OVER, GENETIC; DNA, CRUCIFORM; DNA, FUNGAL; DNA, MITOCHONDRIAL; GENES, FUNGAL; GENES, LETHAL; MOLECULAR SEQUENCE DATA; MYCELIUM; NEUROSPORA CRASSA; PHENOTYPE; RECOMBINATION, GENETIC; RESTRICTION MAPPING; SEQUENCE DELETION;

NEUROSPORA; NEUROSPORA CRASSA; NEUROSPORA INTERMEDIA;

EID: 12744265226     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fgb.2004.11.007     Document Type: Article

References (50)

1. A. Almasan, and N.C. Mishra Molecular characterization of the mitochondrial DNA of a new stopper mutant ER-3 of Neurospora crassa Genetics 120 1988 935 945
2. A. Almasan, and N.C. Mishra Characterization of a novel plasmid-like element in Neurospora crassa derived mostly from the mitochondrial DNA Nucl. Acids Res. 18 1990 5871 5877
3. A. Almasan, and N.C. Mishra Recombination by sequence repeats with formation of suppressive or residual mitochondrial DNA in Neurospora Proc. Natl. Acad. Sci. USA 88 1991 7684 7688
4. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
5. T. Asai, D.B. Bates, and T. Kogoma DNA replication triggered by double-stranded breaks in E. coli: dependence of homologous recombination function Cell 78 1994 1051 1061
6. H. Bertrand Role of mitochondrial DNA in the senescence and hypovirulence and potential for plant disease control Annu. Rev. Phytopathol. 38 2000 397 422
7. H. Bertrand, R.A. Collins, L.L. Stohl, R.R. Goewert, and A.M. Lambowitz Deletion mutants of Neurospora crassa mitochondrial DNA and their relationship to the "stop-start" growth phenotype Proc. Natl. Acad. Sci. USA 77 1980 6032 6036
8. H. Bertrand, Q. Wu, and B.L. Seidel-Rogol Hyperactive recombination in the mitochondrial DNA of the natural death nuclear mutant of Neurospora crassa Mol. Cell. Biol. 13 1993 6778 6788
9. D.F. Bogenhagen, K.G. Pinz, and R.M. Perez-Jannotti Enzymology of mitochondrial base excision repair Progr. Nucl. Acid Res. Mol. Biol. 68 2001 257 271
10. C. Borghouts, E. Kimpel, and H.D. Osiewacz Mitochondrial DNA rearrangements of Podospora anserina are under the control of the nuclear gene grisea Proc. Natl. Acad. Sci. USA 94 1997 10768 10773
11. R.A. Butow, P.S. Perlman, and L.I. Grossman The unusual var1 gene of yeast mitochondrial DNA Science 228 1985 1496 1501
12. R.A. Collins Neurospora crassa laboratory strain 74-OR23-1A: mitochondrial genes S.J. O'Brien Genetic Maps sixth ed. 1993 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY 3.19 3.21
13. V. Contamine, and M. Picard Maintenance and integrity of the mitochondrial genome: a plethora of nuclear genes in the budding yeast Microbiol. Mol. Biol. Rev. 64 2000 281 315
14. R.H. Davis, and F.J. deSerres Genetic and microbiological research techniques for Neurospora crassa Methods Enzymol. A 17 1970 79 143
15. H. de Vries, J.C. de Jonge, P. van't Sant, E. Agsteribbe, and A. Arnberg A stopper mutant of Neurospora crassa containing two populations of aberrant mitochondrial DNA Curr. Genet. 3 1981 205 211
16. H. de Vries, B. Alzner-DeWeerd, C.A. Breitenberger, D.D. Chang, J.C. deJonge, and U.L. RajBhandary The E35 stopper mutant of Neurospora crassa: precise localization of deletion endpoints in mitochondrial DNA and evidence that the deleted DNA codes for a subunit of NADH dehydrogenase EMBO J. 5 1986 779 785
17. M. De Zamaroczy, and G. Bernardi Sequence organization of the mitochondrial genome of yeast-a review Gene 41 1985 1 17
18. G.L. Dianov, N. Souza-Pinto, S.G. Nyaga, T. Thybo, T. Stevnsner, and V.A. Bohr Base excision repair in nuclear and mitochondrial DNA Progr. Nucl. Acid Res. Mol. Biol. 68 2001 285 297
19. F. Diaz, M.P. Bayona-Bafaluy, M. Rana, M. Mora, H. Hao, and C.T. Moraes Human mitochondrial DNA with large deletions repopulates organelles faster than full-length genomes under relaxed copy number control Nucl. Acids Res. 30 2002 4626 4633
20. C.L. Dieckmann, and B. Gandy Preferential recombination between GC clusters in yeast mitochondrial DNA Curr. Genet. 6 1987 4197 4203
21. E. Dufour, J. Boulay, V. Rincheval, and A. Sainsard-Chanet A causal link between respiration and senescence in Podospora anserina Proc. Natl. Acad. Sci. USA 97 2000 4138 4143
22. G.V. Goethem, B. Dermaut, A. Lofgren, J. Martin, and C.V. Broeckhoven Mutation of POLG is associated with progressive external ophthalmoplegia characterized by mtDNA deletions Nat. Genet. 28 2001 211 212
23. 0 petite mutants of yeast EMBO J. 1 1982 705 711
24. A.J.F. Griffiths Fungal senescence Annu. Rev. Genet. 26 1992 351 372
25. A.J.F. Griffiths Natural plasmids of filamentous fungi Microbiol. Rev. 59 1995 673 685
26. S.R. Gross, T.S. Hsieh, and P.H. Levine Intramolecular recombination as a source of mitochondrial chromosome heteromorphism in Neurospora Cell 38 1984 233 239
27. C. Jamet-Vierny, O. Begel, and L. Belcour Senescence in Podospora anserina: amplification of a mitochondrial DNA sequence Cell 21 1980 189 194
28. T. Kogoma Recombination by replication Cell 85 1996 625 627
29. A. Kuzminov Instability of inhibited replication forks in E. coli Bioessays 17 1995 733 741
30. A.M. Lambowitz Preparation and analysis of mitochondrial ribosomes Methods Enzymol. 59 1979 421 433
31. S.P. Ledoux, and G.L. Wilson Base excision repair of mitochondrial DNA damage in mammalian cells Prog. Nucl. Acid Res. Mol. Biol. 68 2001 273 284
32. D.K. Nag, and A. Kurst A 140-bp long palindromic sequence induces double strand breaks during meiosis in the yeast Saccharomyces cerevisiae Genetics 146 1997 835 847
33. A. Navaraj, A. Pandit, and R. Maheshwari senescent: a new Neurospora crassa nuclear gene mutant derived from nature exhibits mitochondrial abnormalities and a "death" phenotype Fungal Genet. Biol. 29 2000 165 173
34. T.W.O. O'Rourke, N.A. Doudican, M.D. Mackereth, P.W. Doetsch, and G.S. Shadel Mitochondrial dysfunction due to oxidative mitochondrial DNA damage is reduced through cooperative actions of diverse proteins Mol. Cell. Biol. 22 2002 4086 4093
35. W.R. Pearson Rapid and sensitive sequence comparison with FASTP and FASTA Methods Enzymol. 183 1990 63 98
36. R.A.G. Reenan, and R.D. Kolodner Characterization of insertion mutations in the Saccharomyces cerevisiae MSH1 and MSH2 genes-evidence for separate mitochondrial and nuclear functions Genetics 132 1992 975 985
37. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning: A Laboratory Manual second ed. 1989 Cold Spring Harbor Laboratory Cold Spring Harbor, New York
38. F. Sanger, S. Nicklen, and A.R. Coulson DNA sequencing with chain-terminating inhibitors Proc. Natl. Acad. Sci. USA 74 1977 5463 5467
39. E.A. Schon, R. Rizutto, C.T. Moraes, H. Nakase, M. Zeviani, and S. DiMauro A direct repeat is a hotspot for large-scale deletion of human mitochondrial DNA Science 244 1989 346 349
40. B.L. Seidel-Rogol, J. King, and H. Bertrand Unstable mitochondrial DNA in natural-death nuclear mutant of Neurospora crassa Mol. Cell. Biol. 9 1989 4259 4264
41. T.C. Sheng A gene that causes natural death in Neurospora crassa Genetics 36 1950 199 212
42. P. Silar, F. Koll, and M. Rossignol Cytosolic ribosomal mutations that abolish accumulation of circular intron in the mitochondria without preventing senescence of Podospora anserina Genetics 145 1997 697 705
43. A. Solano, J. Gamez, F.J. Carod, M. Pineda, A. Playan, E. Lopez-Gallardo, A.L. Andreu, and J. Montoya Characterization of repeat and palindrome elements in patients harbouring single deletions of mitochondrial DNA J. Med. Genet. 40 2003 e86
44. P.J. Vierula, and H. Bertrand A deletion derivative of the kalilo senescence plasmid forms hairpin and duplex DNA structures in the mitochondria of Neurospora Mol. Gen. Genet. 234 1992 361 368
45. D.C. Wallace Mitochondrial diseases in man and mouse Science 283 1999 1482 1488
46. G.F. Weiller, H. Bruckner, S.H. Kim, E. Pratje, and R.J. Schweyen A GC cluster repeat is a hotspot for mit-macro deletions in yeast mitochondrial DNA Mol. Gen. Genet. 226 1991 233 240
47. S. Yin, J. Heckman, and U.L. RajBhandary Highly conserved GC-rich palindromic DNA sequences flank tRNA genes in Neurospora crassa mitochondria Cell 26 1981 325 332
48. M. Zeviani, N. Bresolin, C. Gellara, A. Bordoni, M. Pannacci, P. Amati, M. Moggio, S. Servidei, and G. Scarlato Nucleus-driven multiple large-scale deletions of the human mitochondrial genome: a new autosomal dominant disease Am. J. Hum. Genet. 47 1990 904 914
49. A.R. Zinn, J.K. Pohlman, P.S. Perlman, and R.A. Butow In vivo double stranded breaks occur at the recombinogenic G + C sequences in the yeast mitochondrial genome Proc. Natl. Acad. Sci. USA 85 1988 2686 2690
50. M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucl. Acids Res. 31 2003 3406 3415