Tuber magnatum Pico, a species of limited geographical distribution: Its genetic diversity inside and outside a truffle ground

Environmental Microbiology

Volumn 7, Issue 1, 2005, Pages 55-65

  Mello, Antonietta ^a   Murat, Claude ^b,c   Vizzini, Alfredo ^b   Gavazza, Virgilio ^d   Bonfante, Paola ^a,b  

^a CNR   (Italy)

^b UNIVERSITY OF TURIN   (Italy)

^c UNIVERSITÉ DE LORRAINE   (France)

^d Quercus scarl   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; RIBOSOMAL SPACER DNA; TUBULIN;

ARTICLE; ASCOMYCETES; ASPEN; CLASSIFICATION; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; MOLECULAR GENETICS; MYCORRHIZA; NUCLEOTIDE SEQUENCE; OAK; POLYMERASE CHAIN REACTION;

ASCOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; MYCORRHIZAE; POLYMERASE CHAIN REACTION; POPULUS; QUERCUS; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TUBULIN; VARIATION (GENETICS);

FUNGI; MYXOGASTRIA; TUBER MAGNATUM;

EID: 12544258332     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2004.00678.x     Document Type: Article

References (50)

1. Aanen, D.K., Kuyper, T.W., Boekhout, T., and Hoekstra, R.F. (2000) Phylogenetic relationships in the genus Hebeloma based on ITS 1 and 2 sequences, with special emphasis on the Hebeloma crustuliniforme complex. Mycologia 92: 269-281.
2. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
3. Amicucci, A., Zambonelli, A., Giomaro, G., Potenza, L., and Stocchi, V. (1998) Identification of ectomycorrhizal fungi of the genus Tuber by species-specific ITS primers. Mol Ecol 7: 273-277.
4. Anderson, J.B., and Kohn, L.M. (1995) Clonality in soilborne, plant-pathogenic fungi. Annu Rev Phytopathol 33: 369-391.
5. Bergemann, S.E., and Miller, S.L. (2002) The size, distribution, and persistence of genets in local populations of the late-stage ectomycorrhizal basidiomycete, Russula brevipes. New Phytol 156: 313-320.
6. Bertault, G., Raymond, M., Berthomieu, A., Callot, G., and Fernandez, D. (1998) Trifling variation in truffles. Nature 394: 734.
7. Bertault, G., Rousset, F., Fernandez, D., Berthomieu, A., Hochberg, M.E., Callots, G., and Raymond, M. (2001) Population genetics and dynamics of the black truffle in a manmade truffle field. Heredity 86: 451-458.
8. Bonello, P., Bruns, T.D., and Gardes, M. (1998) Genetic structure of a natural population of the ectomycorrhizal fungus Suillus pungens. New Phytol 138: 533-542.
9. Brookes, A. (1999) The essence of SNPs. Gene 234: 177-186.
10. Debuchy, R., and Coppin, E. (1992) The mating types of Podospora anserina: functional analysis and sequence of fertilization domains. Mol Gen Genet 233: 133-121.
11. Debuchy, R., Arnaise, S., and Lecellier, G. (1993) The matallele of Podospora anserina contains three regulatory genes required for the development of fertilized female organs. Mol Gen Genet 241: 667-673.
12. Donadini, J.C. (1987) Pezizales et Tuberales (2). Le genre Tuber (T. borchii Vitt. et T. puberulum Berk and Broome). Cytologie des spores, paraphyses et poils par coloration microscopie électronique (Tuber melanosporum). Doc Mycol 18: 47-60.
13. Ferreira, A.V.B., Saupe, S., and Glass, N.L. (1996) Transcriptional analysis of the mt A idiomorph of Neurospora crassa identifies two genes in addition to mt A-1. Mol Gen Genet 250: 767-774.
14. Fiore-Donno, A.M., and Martin, F. (2001) Populations of ectomycorrhizal Laccaria amethystina and Xerocomus spp. show contrasting colonization patterns in a mixed forest. New Phytol 152: 533-542.
15. Frizzi, G., Lalli, G., Miranda, M., and Pacioni, G. (2001) Intraspecific isoenzyme variability in Italian population of the white truffle Tuber magnatum. Mycol Res 105: 365-369.
16. Gandeboeuf, D., Dupré, C., Roechel-Drevet, P., Nicolas, P., and Chevalier, G. (1997) Grouping and identification of Tuber species using RAPD markers. Can J Bot 75: 36-45.
17. Gherbi, H., Delaruelle, C., Selosse, M.A., and Martin, F. (1999) High genetic diversity in a population of the ectomycorrhizal basidiomycete Laccaria amethystina in a 150-year-old beech forest. Mol Ecol 8: 2003-2013.
18. Glass, N.L., and Donaldson, G.C. (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Appl Environ Microbiol 61: 1323-1330.
19. Glass, N.L., Grotelueschen, J., and Metzenberg, R.L. (1990) Neurospora crassa A mating type region. Proc Natl Acad Sci USA 87: 4912-4916.
20. Glen, M., Tommerup, I.C., Bougher, N.L., and O'Brien, P.A. (2001) Interspecific and intraspecific variation of ectomycorrhizal fungi associated with Eucalyptus ecosystems as revealed by ribosomal DNA PCR-RFLP. Mycol Res 105: 843-858.
21. Guidot, A., Gryta, H., Gourbière, F., Debaud, J.C., and Marmeisse, R. (2002) Forest habitat characteristics affect balance between sexual reproduction and clonal propagation of the ectomycorrhizal mushroom Hebeloma cylin-drosporum. OIKOS 99: 25-36.
22. Guillemaud, T., Raymond, M., Callot, G., Cleyet-Marel, J.C., and Fernandez, D. (1996) Variability of nuclear and mitochondrial ribosomal DNA of a truffle species (Tuber aestivum). Mycol Res 100: 547-550.
23. Høiland, K., and Holst-Jensen, A. (2000) Cortinarius phylogeny and possible taxonomic implications of ITS rDNA sequences. Mycologia 92: 694-710.
24. Jany, J.L., Garbaye, J., and Martin, F. (2002) Cenococcum geophilum populations show a high degree of genetic diversity in beech forests. New Phytol 154: 651-659.
25. Johannesson, H., Vasiliauskas, R., Dahlberg, A., Penttila, R., and Stenlid, J. (2001) Genetic differentiation in Eurasian populations of the postfire ascomycete Daldinia loculata. Mol Ecol 10: 1665-1677.
26. Johannesson, H., Ihrmark, K., and Stenlid, J. (2002) Differential decay extension capability of Daldinia spp. in wood of Betula pendula, Alnus glutinosa and Fraxinus excelsior. For Ecol Managem 167: 295-302.
27. Lanfranco, L., Perotto, S., and Bonfante, P. (1998) Applications of PCR for studying the biodiversity of mycorrhizal fungi. In Applications of PCR in Mycology. Bridge, P.D., Arora, D.K., Reddy, C.A., and Elander, R.P. (eds). CABI 6: 107-124.
28. Mabru, D., Dupré, C., Douet, J.P., Leroy, P., Ravel, C., Ricard, J.M., et al. (2001) Rapid molecular typing method for the reliable detection of Asiatic black truffle (Tuber indicum) in commercialized products: fruiting bodies and mycorrhizal seedlings. Mycorrhiza 11: 89-94.
29. Mello, A., Nosenzo, C., Meotto, F., and Bonfante, P. (1996) Rapid typing of truffle mycorrhizal roots by PCR amplification of the ribosomal DNA spacers. Mycorrhiza 6: 417-421.
30. Mello, A., Garnero, L., and Bonfante, P. (1999) Specific PCR-primers as a reliable tool for the detection of white truffles in mycorrhizal roots. New Phytol 141: 511-516.
31. Mello, A., Vizzini, A., Longato, S., Rollo, F., Bonfante, P., and Trappe, J.M. (2000) Tuber borchii versus T. maculatum: neotype studies and DNA analyses. Mycologia 92: 326-333.
32. Mello, A., Fontana, A., Meotto, F., Comandini, O., and Bonfante, P. (2001) Molecular and morphological characterization of T. magnatum mycorrhizas in a long-term survey. Microbiol Res 155: 279-284.
33. Mello, A., Cantisani, A., Vizzini, A., and Bonfante, P. (2002) Genetic variation of Tuber uncinatum and its relatedness to other black truffles. Environ Microbiol 4: 584-594.
34. Murat, C., Diez, J., Luis, P., Delaruelle, C., Dupré, C., Chevalier, G., et al. (2004) Polymorphism at the ribosomal DNA ITS and its relation to post-glacial recolonization routes of the Perigord truffle Tuber melanosporum. New Phytol 164: 401-411.
35. Nelson, M.A. (1996) Mating systems in ascomycetes: a romp in the sac. Trends Genet 12: 69-74.
36. Pöggeler, S. (2001) Mating-type genes for classical strain improvements of ascomycetes. Appl Microbiol Biotechnol 56: 589-601.
37. Primmer, C.R., Borge, T., Lindell, J., and Saetre, G.P. (2002) Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome. Mol Ecol 11: 603-612.
38. Redecker, D., Szaro, T.M., Bowman, J.R., and Bruns, T.D. (2001 ) Small genets of Lactarius xanthogalactus, Russula cremaricolor and Amanita francheti in late stage ectomycorrhizal successions. Mol Ecol 10: 1025-1034.
39. Rubini, A., Topini, F., Riccioni, C., Paolocci, F., and Arcioni, S. (2004) Isolation and characterization of polymorphic microsatellite loci in white truffle (Tuber magnatum). Mol Ecol Notes 4: 116-118.
40. Selosse, M.A., Weiss, M., Jany, J.L., and Tillier, A. (2002) Communities and populations of sebacinoid basidiomycetes associated with the achlorophyllous orchid Neottia nidus-avis (L) L.C.M. Rich, and neighbouring tree ectomycorrhizae. Mol Ecol 11: 1831-1844.
41. Smith, S.E., and Read, D.J. (1997) Mycorrhizal Symbiosis, 2nd edn. London, UK: Academic Press.
42. Soubabere, O., Jorge, V., Notteghem, J.L., Lebrun, M.H., and Tharreau, D. (2001) Sequence characterized amplified region markers for the rice blast fungus, Magnaporthe grisea. Mol Ecol Notes 1: 19-21.
43. Staben, C., and Yanofsky, C. (1990) Neurospora crassa a mating type region. Proc Natl Acad Sci USA 87: 4917-4921.
44. Tenaillon, M.I., Sawkins, M.C., Long, A.D., Gaut, R.L., Doebley, J.F., and Gaut, B.S. (2001) Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc Natl Acad Sci USA 98: 9161-9166.
45. Timothy, Y.J., Moncalvo, J.M., Li, S., and Vilgalys, R. (2001) Polymorphism at the ribosomal DNA spacers and its relation to breeding structure of the widespread mushroom Schizophyllum commune. Genetics 157: 149-161.
46. Vizzini, A. (2001) Relazioni filogenetiche del genere Tuber (Tuberaceae) nell'ambito dell'ordine. Pezizales: analisi molecolari, cariologiche, macro- e micromorfologiche. Tesi Dottorato XIV ciclo. PhD Thesis, University of Turin, Italy.
47. White, T.J., Bruns, T., Lee, S., and Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols. A Guide to Methods and Applications. Innis, M.A., Gelfand, D.H., Sninshy, J.J. and White, T.D. (eds). London, UK: Academic Press, pp. 315-322.
48. Yan, Z.H., Rogers, S.O., and Wang, C.J.K. (1995) Assessment of Phialophora species based on ribosomal DNA internal transcribed spacers and morphology. Mycologia 87: 72-83.
49. Zhou, Z., Miwa, M., and Hogetsu, T. (1999) Analysis of genetic structure of a Suillus gevillei populations in a Larix kaempferi stand by polymorphism of inter-simple sequence repeat (ISSR). New Phytol 144: 55-63.
50. Zhou, Z., Miwa, M., and Hogetsu, T. (2000) Genet distribution of ectomycorrhizal fungus Suillus gevillei populations in two Larix kaempferi stands over two years. J Plant Res 113: 365-374.