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Volumn 4, Issue , 2004, Pages

A simulation model of Escherichia coli osmoregulatory switch using E-CELL system

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; ISOPROTEIN; OUTER MEMBRANE PROTEIN C; OUTER MEMBRANE PROTEIN F; OUTER MEMBRANE PROTEIN REGULATOR; PORIN; SUCROSE;

EID: 12344275812     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-4-44     Document Type: Article
Times cited : (12)

References (46)
  • 1
    • 0036790373 scopus 로고    scopus 로고
    • Two-components and phosphorelay signal-transduction systems as therapeutic targets
    • Stephenson K, Hoch JA: Two-components and phosphorelay signal-transduction systems as therapeutic targets. Curr Opin Pharmacol 2002, 2:507-512.
    • (2002) Curr Opin Pharmacol , vol.2 , pp. 507-512
    • Stephenson, K.1    Hoch, J.A.2
  • 2
    • 0035369115 scopus 로고    scopus 로고
    • Histidine Kinases and Response regulator proteins in two-component signaling systems
    • West AH, Stock AM: Histidine Kinases and Response regulator proteins in two-component signaling systems. Trends Biochem Sci 2001, 26:369-376.
    • (2001) Trends Biochem Sci , vol.26 , pp. 369-376
    • West, A.H.1    Stock, A.M.2
  • 4
    • 0027231876 scopus 로고
    • Computer Simulation of the Phosphorylation Cascade Controlling Bacterial chemotaxis
    • Bray D, Bourett RB, Simon MI: Computer Simulation of the Phosphorylation Cascade Controlling Bacterial chemotaxis. Mol Biol Cell 1993, 4:469-482.
    • (1993) Mol Biol Cell , vol.4 , pp. 469-482
    • Bray, D.1    Bourett, R.B.2    Simon, M.I.3
  • 5
    • 0024398149 scopus 로고
    • Protein phosphorylation and regulation of adaptive responses in bacteria
    • Stock JB, Ninfa AJ, Stock AM: Protein phosphorylation and regulation of adaptive responses in bacteria. Microbiol Rev 1989, 53:450-490.
    • (1989) Microbiol Rev , vol.53 , pp. 450-490
    • Stock, J.B.1    Ninfa, A.J.2    Stock, A.M.3
  • 6
    • 0028282042 scopus 로고
    • Protein Histidine kinases and signal transduction in prokaryotes and eukaryotes
    • Alex LA, Simon MI: Protein Histidine kinases and signal transduction in prokaryotes and eukaryotes. Trends Genet 1994, 10:133-138.
    • (1994) Trends Genet , vol.10 , pp. 133-138
    • Alex, L.A.1    Simon, M.I.2
  • 7
    • 0037031925 scopus 로고    scopus 로고
    • The linker region plays an important role in the interdomain communication of the resposne regulator OmpR
    • Mattison K, Rand O, Kenney LJ: The linker region plays an important role in the interdomain communication of the resposne regulator OmpR. J Bacteriol 2002, 277:32714-32721.
    • (2002) J Bacteriol , vol.277 , pp. 32714-32721
    • Mattison, K.1    Rand, O.2    Kenney, L.J.3
  • 8
    • 0026006215 scopus 로고
    • Prokaryotic osmoregulation: Genetics and physiology
    • Csonka LN, Hanson AD: Prokaryotic osmoregulation: genetics and physiology. Annu Rev Microbiol 1991, 45:569-606.
    • (1991) Annu Rev Microbiol , vol.45 , pp. 569-606
    • Csonka, L.N.1    Hanson, A.D.2
  • 9
    • 0025140705 scopus 로고
    • Signal transduction and gene regulation through the phosphorylation of two regulatory components: The molecular basis for the osmotic regulation of porin genes
    • Mizuno T, Mizushima S: Signal transduction and gene regulation through the phosphorylation of two regulatory components: the molecular basis for the osmotic regulation of porin genes. Mol Microbiol 1990, 4:1077-1082.
    • (1990) Mol Microbiol , vol.4 , pp. 1077-1082
    • Mizuno, T.1    Mizushima, S.2
  • 10
    • 0021099635 scopus 로고
    • A comparative study on the genes for three porins of the Escherichia coli outer membrane: DNA sequence of the osmoregulated ompC gene
    • Mizuno T, Chou MY, Inouye M: A comparative study on the genes for three porins of the Escherichia coli outer membrane: DNA sequence of the osmoregulated ompC gene. J Biol Chem 1983, 258:6932-6940.
    • (1983) J Biol Chem , vol.258 , pp. 6932-6940
    • Mizuno, T.1    Chou, M.Y.2    Inouye, M.3
  • 11
    • 0024219910 scopus 로고
    • EnvZ, a transmembrane environmental sensor of Escherichia coli K-12, is phosphorylated in vitro
    • Igo MM, Silhavy TJ: EnvZ, A transmembrane environmental sensor of Escherichia coli K-12, is phosphorylated in vitro. J Bacteriol 1988, 170:5971-5973.
    • (1988) J Bacteriol , vol.170 , pp. 5971-5973
    • Igo, M.M.1    Silhavy, T.J.2
  • 12
    • 0025181066 scopus 로고
    • Transmembrane signal transduction and osmoregulation in Escherichia coli: I. Analysis by site directed mutagenesis of the amino acid residues involved in phosphotransfer between the two regulatory components, EnvZ and OmpR
    • Kanamaru K, Kaiba H, Mizuno T: Transmembrane signal transduction and osmoregulation in Escherichia coli: I. Analysis by site directed mutagenesis of the amino acid residues involved in phosphotransfer between the two regulatory components, EnvZ and OmpR. J Biochem 1990, 108:483-487.
    • (1990) J Biochem , vol.108 , pp. 483-487
    • Kanamaru, K.1    Kaiba, H.2    Mizuno, T.3
  • 13
    • 0034035586 scopus 로고    scopus 로고
    • Two-component and phosphorelay signal transduction
    • Hoch JA: Two-component and phosphorelay signal transduction. Curr Opin Microbiol 2000, 3:165-70.
    • (2000) Curr Opin Microbiol , vol.3 , pp. 165-170
    • Hoch, J.A.1
  • 14
    • 0030052427 scopus 로고    scopus 로고
    • + Mutant of EnvZ (EnvZN347D), a bifunctional signal transducer of Escherichia coli
    • + Mutant of EnvZ (EnvZN347D), a bifunctional signal transducer of Escherichia coli. J Biol Chem 1996, 271:1424-1429.
    • (1996) J Biol Chem , vol.271 , pp. 1424-1429
    • Dutta, R.1    Inouye, M.2
  • 15
    • 0024759933 scopus 로고
    • Phosphorylation and dephosphorylation of a bacterial transcriptional activator by a transmembrane receptor
    • Igo MM, Ninfa AJ, Stock JB, Silhavy TJ: Phosphorylation and dephosphorylation of a bacterial transcriptional activator by a transmembrane receptor. Gene Dev 1989, 3:1725-1734.
    • (1989) Gene Dev , vol.3 , pp. 1725-1734
    • Igo, M.M.1    Ninfa, A.J.2    Stock, J.B.3    Silhavy, T.J.4
  • 16
    • 0024360445 scopus 로고
    • Phosphorylation of a bacterial activator protein OmpR by a protein kinase, EnvZ, results in a stimulation of its DNA binding ability
    • Aiba H, Nakasai F, Mizushima S, Mizuno T: Phosphorylation of a bacterial activator protein OmpR by a protein kinase, EnvZ, results in a stimulation of its DNA binding ability. J Biochem 1989, 106:5-7.
    • (1989) J Biochem , vol.106 , pp. 5-7
    • Aiba, H.1    Nakasai, F.2    Mizushima, S.3    Mizuno, T.4
  • 17
    • 0023738181 scopus 로고
    • Regulation of OmpC and OmpF expression in Escherichia coli in the absence of EnvZ
    • Frost S, Delgado J, Ramakrishnan G, Inouye M: Regulation of OmpC and OmpF expression in Escherichia coli in the absence of EnvZ. J Bacteriol 1988, 170:5080-5085.
    • (1988) J Bacteriol , vol.170 , pp. 5080-5085
    • Frost, S.1    Delgado, J.2    Ramakrishnan, G.3    Inouye, M.4
  • 18
    • 0029026859 scopus 로고
    • Phosphorylation dependent conformational changes in OmpR, an osmoregulatory DNA-binding protein of Escherichia coli
    • Kenny LJ Bauer MD, Silhavy TJ: Phosphorylation dependent conformational changes in OmpR, an osmoregulatory DNA-binding protein of Escherichia coli. Proc Natl Acad Sci 1995, 92:8866-8870.
    • (1995) Proc Natl Acad Sci , vol.92 , pp. 8866-8870
    • Kenny, L.J.1    Bauer, M.D.2    Silhavy, T.J.3
  • 19
    • 0032458848 scopus 로고    scopus 로고
    • Hierarchical and co-operative binding of OmpR to a fusion construct containing the ompC and ompF upstream regulatory sequences of Escherichia coli
    • Bergstrom LC, Qin L, Harlocker SL, Egger LA, Inouye M: Hierarchical and co-operative binding of OmpR to a fusion construct containing the ompC and ompF upstream regulatory sequences of Escherichia coli. Genes cells 1998, 3:777-788.
    • (1998) Genes Cells , vol.3 , pp. 777-788
    • Bergstrom, L.C.1    Qin, L.2    Harlocker, S.L.3    Egger, L.A.4    Inouye, M.5
  • 20
    • 0034624080 scopus 로고    scopus 로고
    • 247 residue in the functioning of the osmosensor EnvZ, a Histidine kinase/phosphatase, in Eschericha coli
    • 247 residue in the functioning of the osmosensor EnvZ, a Histidine kinase/phosphatase, in Eschericha coli. J Biol Chem 2000, 275:38645-38653.
    • (2000) J Biol Chem , vol.275 , pp. 38645-38653
    • Dutta, R.1    Yoshida, T.2    Inouye, M.3
  • 21
    • 0025490244 scopus 로고
    • Transmembrane signal transduction & Osmoregulation in Escherichia coli: II the osmotic sensor, EnvZ located in the isolated cytoplasmic membrane display its phosphorylation and dephosphorylation abilities as to the activator OmpR
    • Tokishita S, Yamada H, Aiba H, Mizuno T: Transmembrane signal transduction & Osmoregulation in Escherichia coli: II The osmotic sensor, EnvZ located in the isolated cytoplasmic membrane display its phosphorylation and dephosphorylation abilities as to the activator OmpR. J Biochem 1990, 108:488-493.
    • (1990) J Biochem , vol.108 , pp. 488-493
    • Tokishita, S.1    Yamada, H.2    Aiba, H.3    Mizuno, T.4
  • 22
    • 0027232349 scopus 로고
    • Requirement of both Kinase and Phosphatase activities of Escherichia coli receptor Taz1 for ligand-dependent signal transduction
    • Yang Y, Park H, Inoyue M: Requirement of both Kinase and Phosphatase activities of Escherichia coli receptor Taz1 for ligand-dependent signal transduction. J Mol Biol 1993, 231:335-342.
    • (1993) J Mol Biol , vol.231 , pp. 335-342
    • Yang, Y.1    Park, H.2    Inoyue, M.3
  • 23
    • 0025057053 scopus 로고
    • Phosphorylation of a bacterial activator protein, OmpR, by a protein kinase, EnvZ, stimulates the transcription of the ompF and ompC gene in Escherichia coli
    • Aiba H, Mizuno T: Phosphorylation of a bacterial activator protein, OmpR, by a protein kinase, EnvZ, stimulates the transcription of the ompF and ompC gene in Escherichia coli. FEBS Lett 1990, 261:19-22.
    • (1990) FEBS Lett , vol.261 , pp. 19-22
    • Aiba, H.1    Mizuno, T.2
  • 24
    • 0036886272 scopus 로고    scopus 로고
    • Interaction of EnvZ, a sensory histidine kinase, with phosphorylated OmpR, the cognate response regulator
    • Yoshida T, Cai SJ, Inouye M: Interaction of EnvZ, a sensory histidine kinase, with phosphorylated OmpR, the cognate response regulator. Mol Microbiol 2002, 46:1283-1294.
    • (2002) Mol Microbiol , vol.46 , pp. 1283-1294
    • Yoshida, T.1    Cai, S.J.2    Inouye, M.3
  • 25
    • 0026603863 scopus 로고
    • Molecular Analysis of the signaling pathway EnvZ and OmpR in Escherichia coli
    • Waukau J, Frost S: Molecular Analysis of the signaling pathway EnvZ and OmpR in Escherichia coli. J Bacteriol 1992, 174:1522-1527.
    • (1992) J Bacteriol , vol.174 , pp. 1522-1527
    • Waukau, J.1    Frost, S.2
  • 26
    • 0022530307 scopus 로고
    • The EnvZ protein of Salmonella typhimurium LT-2 and Escherichia coli K-12 is located in the cytoplasmic membrane
    • Lilijestrom P, Laamanen I, Palva E: The EnvZ protein of Salmonella typhimurium LT-2 and Escherichia coli K-12 is located in the cytoplasmic membrane. FEMS Microbiol Lett 1988, 36:145-150.
    • (1988) FEMS Microbiol Lett , vol.36 , pp. 145-150
    • Lilijestrom, P.1    Laamanen, I.2    Palva, E.3
  • 27
    • 0030580087 scopus 로고    scopus 로고
    • Identification of the bases in the ompF regulatory region, which interact with the transcription factor OmpR
    • Huang KJ, Igo MM: Identification of the bases in the ompF regulatory region, which interact with the transcription factor OmpR. J Mol Biol 1996, 262:615-628.
    • (1996) J Mol Biol , vol.262 , pp. 615-628
    • Huang, K.J.1    Igo, M.M.2
  • 28
    • 0032483501 scopus 로고    scopus 로고
    • Relative binding affinities of OmpR and OmpR-Phosphate at the ompF and ompC Regulatory Sites
    • Head CG, Tardy A, Kenny LJ: Relative binding affinities of OmpR and OmpR-Phosphate at the ompF and ompC Regulatory Sites. J Mol Biol 1998, 281:857-870.
    • (1998) J Mol Biol , vol.281 , pp. 857-870
    • Head, C.G.1    Tardy, A.2    Kenny, L.J.3
  • 29
    • 0036886272 scopus 로고    scopus 로고
    • Interaction of EnvZ, a sensory histidine kinase, with phosphorylated OmpR, the cognate response regulator
    • Yoshida T, Cai SJ, Inouye M: Interaction of EnvZ, a sensory histidine kinase, with phosphorylated OmpR, the cognate response regulator. Mol Microbiol 2002, 46:1283-1294.
    • (2002) Mol Microbiol , vol.46 , pp. 1283-1294
    • Yoshida, T.1    Cai, S.J.2    Inouye, M.3
  • 30
    • 0037025378 scopus 로고    scopus 로고
    • EnvZ-OmpR Interaction and Osmoregulation in Escherichia coli
    • Cai SJ, Inouye M: EnvZ-OmpR Interaction and Osmoregulation in Escherichia coli. J Biol Chem 2002, 277:24155-24161.
    • (2002) J Biol Chem , vol.277 , pp. 24155-24161
    • Cai, S.J.1    Inouye, M.2
  • 31
    • 0030940341 scopus 로고    scopus 로고
    • Phosphorylation stimulates the cooperative DNA-binding properties of the transcription factor OmpR
    • Huang KJ, Lan CY, Igo MM: Phosphorylation stimulates the cooperative DNA-binding properties of the transcription factor OmpR. Proc Natl Acad Sci 1997, 94:2828-2832.
    • (1997) Proc Natl Acad Sci , vol.94 , pp. 2828-2832
    • Huang, K.J.1    Lan, C.Y.2    Igo, M.M.3
  • 32
    • 0024338218 scopus 로고
    • Transfer of phosphoryl group between two regulatory proteins invovlved in osmoregulatory expression of the ompF and ompC genes in Escherichia coli
    • Aiba H, Mizuno T, Mizushima S: Transfer of phosphoryl group between two regulatory proteins invovlved in osmoregulatory expression of the ompF and ompC genes in Escherichia coli. J Biol Chem 1989, 264:8563-8567.
    • (1989) J Biol Chem , vol.264 , pp. 8563-8567
    • Aiba, H.1    Mizuno, T.2    Mizushima, S.3
  • 33
    • 0021205232 scopus 로고
    • Shrinkage of growing Escherichia coli cells by osmotic challenge
    • Koch AL: Shrinkage of growing Escherichia coli cells by osmotic challenge. J Bacteriol 1984, 159:919-924.
    • (1984) J Bacteriol , vol.159 , pp. 919-924
    • Koch, A.L.1
  • 34
    • 0033014719 scopus 로고    scopus 로고
    • Osmosensing by Bacteria: Signals and Membrane-Based Sensors
    • Wood JM: Osmosensing by Bacteria: Signals and Membrane-Based Sensors. Microbiol Mol Biol Rev 1999, 63:230-262.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 230-262
    • Wood, J.M.1
  • 36
    • 0015147278 scopus 로고
    • The effect of carbon and nitrogen Sources on the level of Metabolic intermediates in Escherichia coli
    • Lowry OH, Ward JB, Glaser L: The effect of carbon and nitrogen Sources on the level of Metabolic intermediates in Escherichia coli. J Biol Chem 1971, 246:6511-6521.
    • (1971) J Biol Chem , vol.246 , pp. 6511-6521
    • Lowry, O.H.1    Ward, J.B.2    Glaser, L.3
  • 37
    • 0024958755 scopus 로고
    • The unpredictability of cellular behaviour: Trivial or fundamental importance of cell biology?
    • Hallett MB: The unpredictability of cellular behaviour: trivial or fundamental importance of cell biology? Perspect Biol Med 1989, 33:110-119.
    • (1989) Perspect Biol Med , vol.33 , pp. 110-119
    • Hallett, M.B.1
  • 38
    • 0037079015 scopus 로고    scopus 로고
    • Computational approaches to cellular rhythms
    • Goldbeter A: Computational approaches to cellular rhythms. Nature 2002, 14:238-45.
    • (2002) Nature , vol.14 , pp. 238-245
    • Goldbeter, A.1
  • 39
    • 0037457896 scopus 로고    scopus 로고
    • Robustness and the cycle of Phosphorylation and Dephosphorylation in a Two-component Regulatory system
    • Batchelor E, Goulian M: Robustness and the cycle of Phosphorylation and Dephosphorylation in a Two-component Regulatory system. Proc Natl Acad Sci 2003, 100:691-696.
    • (2003) Proc Natl Acad Sci , vol.100 , pp. 691-696
    • Batchelor, E.1    Goulian, M.2
  • 40
    • 0031973725 scopus 로고    scopus 로고
    • Differential Expression of the OmpF and OmpC Porin Proteins in Escherichia coli K-12 depends upon the level of Active OmpR
    • Lan CY, Igo MM: Differential Expression of the OmpF and OmpC Porin Proteins In Escherichia coli K-12 depends upon the level of Active OmpR. J Bacteriol 1998, 180:171-174.
    • (1998) J Bacteriol , vol.180 , pp. 171-174
    • Lan, C.Y.1    Igo, M.M.2
  • 41
    • 0026333013 scopus 로고
    • EnvZ controls the concentration of phosphorylated OmpR to mediate osmoregulation of the porin genes
    • Russo FD, Silhavy TJ: EnvZ controls the concentration of phosphorylated OmpR to mediate osmoregulation of the porin genes. J Mol Biol 1991, 222:567-580.
    • (1991) J Mol Biol , vol.222 , pp. 567-580
    • Russo, F.D.1    Silhavy, T.J.2
  • 42
    • 84872277451 scopus 로고    scopus 로고
    • E-CELL
    • E-CELL [http://ecell.sourceforge.net]
  • 45
    • 2142751637 scopus 로고    scopus 로고
    • Beidhardt, F.C., Ed American Society of Microbiology, Washington DC
    • Wanner BL: In Escherichia coli and Salmonella (Beidhardt, F.C., Ed), 1, 1359 American Society of Microbiology, Washington DC; 1996.
    • (1996) Escherichia coli and Salmonella , vol.1 , pp. 1359
    • Wanner, B.L.1
  • 46
    • 0025359227 scopus 로고
    • In vivo phosphorylation of OmpR, the transcription activator of the ompF and ompC genes in the Escherichia coli
    • Frost S, Delgado J, Rampersaud A, Inouye M: In vivo phosphorylation of OmpR, the transcription activator of the ompF and ompC genes in the Escherichia coli. J Bacteriol 1990, 172:3473-3477.
    • (1990) J Bacteriol , vol.172 , pp. 3473-3477
    • Frost, S.1    Delgado, J.2    Rampersaud, A.3    Inouye, M.4


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