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Volumn 20, Issue 18, 2004, Pages 3553-3564

The Baumgartner-Weiβ-Schindler test for the detection of differentially expressed genes in replicated microarrays experiments

Author keywords

[No Author keywords available]

Indexed keywords

BRCA1 PROTEIN; BRCA2 PROTEIN; COMPLEMENTARY DNA; OLIGONUCLEOTIDE;

EID: 12344269956     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth442     Document Type: Article
Times cited : (27)

References (42)
  • 1
    • 0345698925 scopus 로고    scopus 로고
    • A nonparametric test for the general two-sample problem
    • Baumgartner,W., Weiß,P. and Schindler,H. (1998) A nonparametric test for the general two-sample problem. Biometrics, 54, 1129-1135.
    • (1998) Biometrics , vol.54 , pp. 1129-1135
    • Baumgartner, W.1    Weiß, P.2    Schindler, H.3
  • 2
    • 0009362848 scopus 로고
    • A comparison of the power of Wilcoxon's rank-sum statistic to that of Student's t statistic under various non-normal distributions
    • Blair,R.C. and Higgins,J.J. (1980) A comparison of the power of Wilcoxon's rank-sum statistic to that of Student's t statistic under various non-normal distributions. J. Educational Statistics, 5 309-335.
    • (1980) J. Educational Statistics , vol.5 , pp. 309-335
    • Blair, R.C.1    Higgins, J.J.2
  • 5
    • 0344826563 scopus 로고    scopus 로고
    • Rank truncated product of P-values, with application to genomewide association scans
    • Dudbridge,F. and Koeleman,B.P.C. (2003) Rank truncated product of P-values, with application to genomewide association scans. Genet. Epidemiol., 25, 360-366.
    • (2003) Genet. Epidemiol. , vol.25 , pp. 360-366
    • Dudbridge, F.1    Koeleman, B.P.C.2
  • 8
    • 0038041495 scopus 로고    scopus 로고
    • Randomization tests for small samples: An application for genetic expression data
    • Gadbury,G.L., Page,G.P., Heo,M., Mountz,J.D. and Allison,D.B. (2003) Randomization tests for small samples: an application for genetic expression data. Appl. Stat., 52, 365-376.
    • (2003) Appl. Stat. , vol.52 , pp. 365-376
    • Gadbury, G.L.1    Page, G.P.2    Heo, M.3    Mountz, J.D.4    Allison, D.B.5
  • 9
    • 0036007438 scopus 로고    scopus 로고
    • Microarrays in ecology and evolution: A preview
    • Gibson,G. (2002) Microarrays in ecology and evolution: a preview. Mol. Ecol., 11, 17-24.
    • (2002) Mol. Ecol. , vol.11 , pp. 17-24
    • Gibson, G.1
  • 10
    • 0344703599 scopus 로고    scopus 로고
    • Normality of oligonucleotide microarray data and implications for parametric statistical analyses
    • Giles,P.J. and Kipling.D. (2003) Normality of oligonucleotide microarray data and implications for parametric statistical analyses. Bioinformatics, 19, 2254-2262.
    • (2003) Bioinformatics , vol.19 , pp. 2254-2262
    • Giles, P.J.1    Kipling, D.2
  • 11
    • 0004173088 scopus 로고    scopus 로고
    • 2nd edn. Springer, New York, NY
    • Good,P.I. (2000) Permutation Tests, 2nd edn. Springer, New York, NY.
    • (2000) Permutation Tests
    • Good, P.I.1
  • 14
    • 0000412069 scopus 로고    scopus 로고
    • GEST: A gene expression search tool based on a novel Bayesian similarity metric
    • Hunter,L., Taylor,R.C., Leach,S.M. and Simon,R. (2001) GEST: a gene expression search tool based on a novel Bayesian similarity metric. Bioinformatics, 17 (Suppl. 1), S115-S122.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Hunter, L.1    Taylor, R.C.2    Leach, S.M.3    Simon, R.4
  • 15
    • 21344496722 scopus 로고
    • Some myths concerning parametric and nonparametric tests
    • Hunter,M.A. and May,R.B. (1993) Some myths concerning parametric and nonparametric tests. Can. Psychol., 34, 384-389.
    • (1993) Can. Psychol. , vol.34 , pp. 384-389
    • Hunter, M.A.1    May, R.B.2
  • 18
    • 0141870968 scopus 로고
    • Effect of tail weight on power and type-I error of robust permutation tests for location
    • Keller-McNulty,S. and Higgins,J.J. (1987) Effect of tail weight on power and type-I error of robust permutation tests for location. Commun. Stat. - Simulat. Comput., 16, 17-35.
    • (1987) Commun. Stat. - Simulat. Comput. , vol.16 , pp. 17-35
    • Keller-McNulty, S.1    Higgins, J.J.2
  • 20
    • 0344824414 scopus 로고    scopus 로고
    • Robust singular value decomposition analysis of microarray data
    • Liu,L., Hawkins,D.M., Ghosh,S. and Young,S.S. (2003) Robust singular value decomposition analysis of microarray data. Proc. Natl Acad. Sci. USA, 100, 13167-13172.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 13167-13172
    • Liu, L.1    Hawkins, D.M.2    Ghosh, S.3    Young, S.S.4
  • 21
    • 0036012343 scopus 로고    scopus 로고
    • Replicated microarray data
    • Lönnstedt,I. and Speed,T. (2002) Replicated microarray data. Stat. Sin, 12, 31-46.
    • (2002) Stat. Sin. , vol.12 , pp. 31-46
    • Lönnstedt, I.1    Speed, T.2
  • 22
    • 2942529451 scopus 로고    scopus 로고
    • Complementary techniques of clustering and composite pattern analysis to Saccharomyces cerevisiae gene expression
    • Magusin,A. (2003) Complementary techniques of clustering and composite pattern analysis to Saccharomyces cerevisiae gene expression. Appl Bioinformatics, 2 (3 Suppl), S37-S46.
    • (2003) Appl. Bioinformatics , vol.2 , Issue.3 SUPPL.
    • Magusin, A.1
  • 24
    • 0002575053 scopus 로고    scopus 로고
    • An exact two-sample test based on the Baumgartner-Weiβ-Schindler statistic and a modification of Lepage's test
    • Neuhäuser,M. (2000) An exact two-sample test based on the Baumgartner-Weiβ-Schindler statistic and a modification of Lepage's test. Commun. Stat. - Theory Meth., 29, 67-78.
    • (2000) Commun. Stat. - Theory Meth. , vol.29 , pp. 67-78
    • Neuhäuser, M.1
  • 25
    • 0001294468 scopus 로고    scopus 로고
    • One-sided two-sample and trend tests based on a modified Baumgartner-Weiβ-Schindler statistic
    • Neuhäuser,M. (2001) One-sided two-sample and trend tests based on a modified Baumgartner-Weiβ-Schindler statistic. J. Nonparametr Stat., 13, 729-739.
    • (2001) J. Nonparametr. Stat. , vol.13 , pp. 729-739
    • Neuhäuser, M.1
  • 26
    • 0036188122 scopus 로고    scopus 로고
    • The Baumgartner-Weiβ-Schindler test in the presence of ties
    • (letter to the editor)
    • Neuhäuser,M. (2002) The Baumgartner-Weiβ-Schindler test in the presence of ties (letter to the editor). Biometrics, 58 250.
    • (2002) Biometrics , vol.58 , pp. 250
    • Neuhäuser, M.1
  • 27
    • 0037471445 scopus 로고    scopus 로고
    • A note on the exact test based on the Baumgartner-Weiβ-Schindler statistic in the presence of ties
    • Neuhäuser,M. (2003) A note on the exact test based on the Baumgartner-Weiβ-Schindler statistic in the presence of ties. Comput. Stat. Data Anal., 42, 561-568.
    • (2003) Comput. Stat. Data Anal. , vol.42 , pp. 561-568
    • Neuhäuser, M.1
  • 28
    • 0035999977 scopus 로고    scopus 로고
    • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
    • Pan,W. (2002) A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics, 18, 546-554.
    • (2002) Bioinformatics , vol.18 , pp. 546-554
    • Pan, W.1
  • 29
    • 0141626917 scopus 로고    scopus 로고
    • The effect of replication on gene expression microarray experiments
    • Pavlidis,P., Li,Q. and Noble,W.S. (2003) The effect of replication on gene expression microarray experiments. Bioinformatics 19, 1620-1627.
    • (2003) Bioinformatics , vol.19 , pp. 1620-1627
    • Pavlidis, P.1    Li, Q.2    Noble, W.S.3
  • 30
    • 0000986628 scopus 로고
    • Significance tests which may be applied to samples from any populations
    • Pitman,E.J.G. (1937) Significance tests which may be applied to samples from any populations. Suppl. J Royal Stat. Soc., 4 119-130.
    • (1937) Suppl. J. Royal Stat. Soc. , vol.4 , pp. 119-130
    • Pitman, E.J.G.1
  • 31
    • 85004846213 scopus 로고
    • An evaluation of parametric and non-parametric tests on modified and non-modified data
    • Rasmussen,J.L. (1986) An evaluation of parametric and non-parametric tests on modified and non-modified data. Brit. J. Mathemat. Stat. Psychol., 39, 213-220.
    • (1986) Brit. J. Mathemat. Stat. Psychol. , vol.39 , pp. 213-220
    • Rasmussen, J.L.1
  • 32
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey,J.D. and Tibshirani,R. (2003) Statistical significance for genomewide studies. Proc. Natl Acad Sci. USA, 100, 9440-9445.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 33
    • 0031429893 scopus 로고    scopus 로고
    • Power comparison of non-parametric tests: Small-sample properties from Monte Carlo experiments
    • Tanizaki,H. (1997) Power comparison of non-parametric tests: small-sample properties from Monte Carlo experiments. J. Appl. Stat. 24, 603-632.
    • (1997) J. Appl. Stat. , vol.24 , pp. 603-632
    • Tanizaki, H.1
  • 34
    • 0034911875 scopus 로고    scopus 로고
    • An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles
    • Thomas,J.G., Olson,J.M., Tapscott,S.J. and Zhao,L.P. (2001) An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles. Genome Res., 11, 1227-1236.
    • (2001) Genome Res. , vol.11 , pp. 1227-1236
    • Thomas, J.G.1    Olson, J.M.2    Tapscott, S.J.3    Zhao, L.P.4
  • 35
    • 0036856209 scopus 로고    scopus 로고
    • Nonparametric methods for identifying differentially expressed genes in microarray data
    • Troyanskaya,O.G., Garber,M.E., Brown,P.O., Botstein,D. and Altman,R.B. (2002) Nonparametric methods for identifying differentially expressed genes in microarray data. Bioinformatics, 18, 1454-1461.
    • (2002) Bioinformatics , vol.18 , pp. 1454-1461
    • Troyanskaya, O.G.1    Garber, M.E.2    Brown, P.O.3    Botstein, D.4    Altman, R.B.5
  • 37
    • 85004724875 scopus 로고
    • A comparison of the power of the t test, Wilcoxon's test, and the approximate permutation test for the two-sample location problem
    • van den Brink,W.P. and van den Brink,S.G.J. (1989) A comparison of the power of the t test, Wilcoxon's test, and the approximate permutation test for the two-sample location problem. Brit. J. Mathemat. Stat. Psychol., 42, 183-189.
    • (1989) Brit. J. Mathemat. Stat. Psychol. , vol.42 , pp. 183-189
    • van den Brink, W.P.1    van den Brink, S.G.J.2
  • 38
    • 0034807713 scopus 로고    scopus 로고
    • Analysing gene expression data from DNA microarrays to identify candidate genes
    • Wu,T.D. (2001) Analysing gene expression data from DNA microarrays to identify candidate genes. J. Pathol., 195, 53-65.
    • (2001) J. Pathol. , vol.195 , pp. 53-65
    • Wu, T.D.1
  • 39
    • 0038494587 scopus 로고    scopus 로고
    • A comparison of parametric versus permutation methods with applications to general and temporal microarray gene expression data
    • Xu,R. and Li,X. (2003) A comparison of parametric versus permutation methods with applications to general and temporal microarray gene expression data. Bioinformatics, 19, 1284-1289.
    • (2003) Bioinformatics , vol.19 , pp. 1284-1289
    • Xu, R.1    Li, X.2
  • 41
    • 0038053155 scopus 로고    scopus 로고
    • Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray experiments
    • Zhao,Y. and Pan,W. (2003) Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray experiments. Bioinformatics, 19, 1046-1054.
    • (2003) Bioinformatics , vol.19 , pp. 1046-1054
    • Zhao, Y.1    Pan, W.2
  • 42
    • 0001685213 scopus 로고
    • The relative power of parametric and nonparametric statistical methods
    • Keren,G. and Lewis,C. (eds), Lawrence Erlbaum Associates, Hillsdale, NJ
    • Zimmerman,D.W. and Zumbo,B.D. (1993) The relative power of parametric and nonparametric statistical methods. In Keren,G. and Lewis,C. (eds), A handbook for data analysis in the behavioral sciences: methodological issues. Lawrence Erlbaum Associates, Hillsdale, NJ, pp. 481-517.
    • (1993) A Handbook for Data Analysis in the Behavioral Sciences: Methodological Issues , pp. 481-517
    • Zimmerman, D.W.1    Zumbo, B.D.2


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