The Low Evolutionary Rate of Human T-Cell Lymphotropic Virus Type-1 Confirmed by Analysis of Vertical Transmission Chains

Molecular Biology and Evolution

Volumn 21, Issue 3, 2004, Pages 603-611

  Van Dooren, S ^a   Pybus, O G ^b   Salemi, M ^a   Liu, H F ^c   Goubau, P ^d   Remondegui, C ^e   Talarmin, A ^f   Gotuzzo, E ^g   Alcantara, L C J ^h   Galvao Castro B ^h   Vandamme, A M ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c MACKAY MEMORIAL HOSPITAL   (Taiwan)

^d UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^e Hospital Zonal General Agudos San Roque   (Argentina)

^f INSTITUT PASTEUR DE LA GUYANE   (French Guiana)

^g INSTITUTO DE MEDICINA TROPICAL ALEXANDER VON HUMBOLDT   (Peru)

^h INSTITUTO OSWALDO CRUZ   (Brazil)

Author keywords

Evolutionary rate; HTLV 1; Molecular clock; Vertical transmission

Indexed keywords

ARTICLE; GENE MUTATION; GENETIC STABILITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN T CELL LEUKEMIA VIRUS 1; LONG TERMINAL REPEAT; MAXIMUM LIKELIHOOD METHOD; MIGRATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; RETROVIRUS; VERTICAL TRANSMISSION;

ADOLESCENT; ADULT; AGED; CHILD; CHILD, PRESCHOOL; DISEASE TRANSMISSION, VERTICAL; EVOLUTION; FEMALE; HTLV-I INFECTIONS; HUMAN T-LYMPHOTROPIC VIRUS 1; HUMANS; LIKELIHOOD FUNCTIONS; MALE; MIDDLE AGED; MUTATION; PEDIGREE; PHYLOGENY; POISSON DISTRIBUTION;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN T-LYMPHOTROPIC VIRUS 1; RNA VIRUSES; UNIDENTIFIED RETROVIRUS;

EID: 12144290724     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh053     Document Type: Article

References (42)

1. Ando, Y., Y. Matsumoto, S. Nakano, K. Saito, K. Kakimoto, T. Tanigawa, Y. Ekuni, M. Kawa, and T. Toyama. 2003. Long-term follow up study of vertical HTLV-I infection in children breast-fed by seropositive mothers. J. Infect. 46:177-179.
2. Alcantara, L. C., S. Van Dooren, M. S. Gonçalves et al. (12 co-authors). 2003. Globin haplotypes of human T-cell lymphotropic virus type I (HTLV-I) infected individuals in Salvador, Bahia, Brazil suggest a postcolumbian African origin of this virus. J. Acquir. Immune Defic. Syndr. 33:536-542.
3. Bittencourt, A. L. 1998. Vertical transmission of HTLV-I/II: a review. Rev. Inst. Med. Trop. Sao Paulo 40:245-251.
4. Gessain, A., R. C. Gallo, and G. Franchini. 1992. Low degree of human T-cell leukemia/lymphoma virus type I genetic drift in vivo as a means of monitoring viral transmission and movement of ancient human populations. J. Virol. 66:2288-2295.
5. Gessain, A., J. Pecon-Slattery, L. Meertens, and R. Mahieux. 2000. Origins of HTLV-1 in South America. Nat. Med. 6:232.
6. Hjelle, B., R. Mills, G. Mertz, and S. Swenson. 1990. Transmission of HTLV-II via blood transfusion. Vox. Sang. 59:119-122.
7. Holmes, E. C. 2003. Molecular clocks and the puzzle of RNA virus origins. J. Virol. 77:3893-3897.
8. Jeanmougin, F., J. D. Thompson, M. Gouy, D. G. Higgins, and T. J. Gibson. 1998. Multiple sequence alignment with Clustal X. Trends Biochem. Sci. 23:403-405.
9. Jenkins, G. M., A. Rambaut, O. G. Pybus, and E. C. Holmes. 2002. Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis. J. Mol. Evol. 54:156-165.
10. Kaplan, J. E., R. F. Khabbaz, E. L. Murphy et al. (15 co-authors). 1996. Male-to-female transmission of human T-cell lymphotropic virus types I and II: association with viral load. The Retrovirus Epidemiology Donor Study Group. J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 1:193-201.
11. Lee, H., P. Swanson, V. S. Shorty, J. A. Zack, J. D. Rosenblatt, and I. S. Chen. 1989. High rate of HTLV-II infection in seropositive i.v. drug abusers in New Orleans. Science. 28:471-475.
12. Li, H.C., T. Fujiyoshi, H. Lou, S. Yashiki, S. Sonoda, L. Cartier, L. Nunez, I. Munoz, S. Horai, and K. Tajima. 1999. The presence of ancient human T-cell lymphotropic virus type I provirus DNA in an Andean mummy. Nat. Med. 5:1428-1432.
13. Li, W. H., M. Tanimura, and P. M. Sharp. 1988. Rates and dates of divergence between AIDS virus nucleotide sequences. Mol. Biol. Evol. 5:313-330.
14. Liu H.F., A. M. Vandamme, K. Kazadi, H. Carton, J. Desmyter, and P. Goubau. 1994. Familial transmission and minimal sequence variability of human T-lymphotropic virus type I (HTLV-I) in Zaire. AIDS Res. Hum. Retrovir. 10:1135-1142.
15. Maddison W., and R. Maddison. 1992. MacClade: analysis of phylogeny and character evolution. Version 3. Sinauer Associates, Sunderland, Mass.
16. Manns, A., R. J. Wilks, E. L. Murphy, G. Haynes, J. P. Figueroa, M. Barnett, B. Hanchard, and W. A. Blattner. 1992. A prospective study of transmission by transfusion of HTLV-I and risk factors associated with seroconversion. Int. J. Cancer 30:886-891.
17. Miura, T., T. Fukunaga, T. Igarashi et al. (20 co-authors) 1994. Phylogenetic subtypes of human T-lymphotropic virus type I and their relations to the anthropological background. Proc. Natl. Acad. Sci. USA 1994 91:1124-1127.
18. Miura, T., M. Yamashita, V. Zaninovic et al. (11 co-authors). 1997. Molecular phylogeny of human T-cell leukemia virus type I and II of Amerindians in Colombia and Chile. J Mol Evol. 44:S76-82.
19. Murphy, E. L., J. P. Figueroa, W. N. Gibbs, A. Brathwaite, M. Holding-Cobham, D. Waters, B. Cranston, B. Hanchard, and W. A. Blattner. 1989. Sexual transmission of human T-lymphotropic virus type I (HTLV-I). Ann. Intern. Med. 1:555-560.
20. Nerurkar, V. R., K. J. Song, N. Saitou, R. R. Melland, and R. Yanagihara. 1993. Interfamilial and intrafamilial genomic diversity and molecular phylogeny of human T-cell lymphotropic virus type I from Papua New Guinea and the Solomon Islands. Virology 196:506-513.
21. Ohkura, S., M. Yamashita, L. Cartier, D. G. Tanabe, M. Hayami, S. Sonoda, and K. Tajima. 1999. Identification and phylogenetic characterization of a human T-cell leukaemia virus type I isolate from a native inhabitant (Rapa Nui) of Easter Island. J. Gen. Virol. 80:1995-2001.
22. Plancoulaine, S., R. P. Buigues, E. L. Murphy et al. (12 co-authors). 1998. Demographic and familial characteristics of HTLV-1 infection among an isolated, highly endemic population of African origin in French Guiana. Int J Cancer 4:331-336.
23. Ramirez, E., L. Cartier, C. Villota, and J. Fernandez. 2002. Genetic characterization and phylogeny of human T-cell lymphotropic virus type I from Chile. Virus Res. 20:135-149.
24. Salemi, M., J. Desmyter, and A. M. Vandamme. 2000. Tempo and mode of human and simian T-lymphotropic virus (HTLV/ STLV) evolution revealed by analyses of full-genome sequences. Mol. Biol. Evol. 17:374-386.
25. Salemi, M., A. M. Vandamme, J. Desmyter, C. Casoli, and U. Bertazzoni. 1999. The origin and evolution of human T-cell lymphotropic virus type II (HTLV-II) and the relationship with its replication strategy. Gene 24:11-21.
26. Salemi, M., A. M. Vandamme, C. Gradozzi, K. Van Laethem, E. Cattaneo, G. Taylor, C. Casoli, P. Goubau, J. Desmyter, and U. Bertazzoni. 1998. Evolutionary rate and genetic heterogeneity of human T-cell lymphotropic virus type II (HTLV-II) using isolates from European injecting drug users. J. Mol. Evol. 46:602-611.
27. Sullivan, M. T., A. E. Williams, C. T. Fang, T. Grandinetti, B. J. Poiesz, and G. D. Ehrlich. 1991. Transmission of human T-lymphotropic virus types I and II by blood transfusion: a retrospective study of recipients of blood components (1983 through 1988). The American Red Cross HTLV-I/II Collaborative Study Group. Arch. Intern. Med. 151:2043-2048.
28. Swofford, D. L. 1998. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b5. Sinauer Associates, Sunderland, Mass.
29. Take, H., M. Umemoto, K. Kusuhara, and K. Kuraya. 1993. Transmission routes of HTLV-I: an analysis of 66 families. Jpn. J. Cancer Res. 84:1265-1267.
30. Thorne, J. L., H. Kishino, and I. S. Painter I. S. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15:1647-1657.
31. Vandamme, A. M., W. W. Hall, M. Lewis, P. Goubau, and M. Salemi. 2000. Origins of HTLV-1 in South America. Nat. Med. 6:232-233.
32. Vandamme, A. M., H. F. Liu, P. Goubau, and J. Desmyter. 1994. Primate T-lymphotropic virus type I LTR sequence variation and its phylogenetic analysis: compatibility with an African origin of PTLV-I. Virology. 202:212-223.
33. Van Dooren, S., E. Gotuzzo, M. Salemi et al. (11 co-authors) 1998. Evidence for a post-Columbian introduction of human T-cell lymphotropic virus type I in Latin America. J. Gen. Virol. 79:2695-2708.
34. Van Dooren, S., M. Salemi, and A. M. Vandamme. 2001. Dating the origin of the African human T-cell lymphotropic virus type-I (HTLV-I) subtypes. Mol. Biol. Evol. 18:661-671.
35. Wattel, E., M. Cavrois, A. Gessain, and S. Wain-Hobson. 1996. Clonal expansion of infected cells: a way of life for HTLV-I. J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 13:S92-S99.
36. Wattel, E., J. P. Vartanian, C. Pannetier, and S. Wain-Hobson. 1995. Clonal expansion of human T-cell leukemia virus type I-infected cells in asymptomatic and symptomatic carriers without malignancy. J. Virol. 69:2863-2868.
37. Wiktor, S. Z., E. J. Pate, P. S. Rosenberg, M. Barnett, P. Palmer, D. Medeiros, E. M. Maloney, and W. A. Blattner. 1997. Mother-to-child transmission of human T-cell lymphotropic virus type I associated with prolonged breast-feeding. J. Hum. Virol. 1:37-44.
38. Yamashita, M., E. Ido, T. Miura, and M. Hayami. 1996. Molecular epidemiology of HTLV-I in the world. J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 1(Suppl):S124-S131.
39. Yamashita, M., G. Picchio, R. Veronesi, S. Ohkura, P. Bare, and M. Hayami. 1998. HTLV-Is in Argentina are phylogenetically similar to those of other South American countries, but different from HTLV-Is in Africa. J. Med. Virol. 55:152-160.
40. Yanagihara, R., N. Saitou, V. R. Nerurkar, K. J. Song, I. Bastian, G. Franchini, and D. C. Gajdusek. 1995. Molecular phylogeny and dissemination of human T-cell lymphotropic virus type I viewed within the context of primate evolution and human migration. Cell Mol. Biol. 41:S145-161.
41. Yang, Y. C., T. Y. Hsu, M. Y. Liu, M. T. Lin, J. Y. Chen, and C. S. Yang. 1997. Molecular subtyping of human T-lymphotropic virus type I (HTLV-I) by a nested polymerase chain reaction-restriction fragment length polymorphism analysis of the envelope gene: two distinct lineages of HTLV-I in Taiwan. J. Med. Virol. 51:25-31.
42. Zuckerkandl, E., and L. Pauling. 1962. Molecular disease, evolution, and genetic heterogeneity. Pp 189-225 in M. Kasha and B. Pullman, eds. Horizons in Biochemistry Academic Academic Press, New York.