Isolation and characterization of marine bacterium producing arylsulfatase

Journal of Microbiology and Biotechnology

Volumn 14, Issue 6, 2004, Pages 1134-1141

  Byun, Dae Seok ^a   Kim, Doo Sang ^a   Godber, J Samuel ^b   Nam, Soo Wan ^c   Oh, Myong Joo ^d   Shim, Hang Sun ^a   Kim, Hyeung Rak ^a  

^a Pukyong National University   (South Korea)

^b LOUISIANA STATE UNIVERSITY   (United States)

^c Dong Eui University   (South Korea)

^d Chonnam National University   (South Korea)

Author keywords

Agar; Arylsufatase; Sphingomonas; Sulfate

Indexed keywords

AGAR; ARYLSULFATASE; DNA 16S; FATTY ACID; SEPHAROSE; SODIUM CHLORIDE; STEARIC ACID; SULFATE;

AEROBIC BACTERIUM; ANIMAL CELL; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIOPLANKTON; BACTERIUM CULTURE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMICAL BOND; CHEMICAL REACTION; CHROMATOGRAPHY; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DNA SEQUENCE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME ISOLATION; ENZYME MECHANISM; ENZYME PURIFICATION; ENZYME SPECIFICITY; ENZYME SYNTHESIS; FERMENTATION; GENE AMPLIFICATION; GRAM NEGATIVE BACTERIUM; HYDROLYSIS; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; SEASHORE; SEQUENCE HOMOLOGY; SPHINGOMONAS; TEMPERATURE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; SPHINGOMONAS; SPHINGOMONAS SP.; UNCULTURED MARINE BACTERIUM;

EID: 12144266478     PISSN: 10177825     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (33)

1. Barbeyron, T., P. Potin, C. Richard, O. Collin, and B. Kloareg. 1995. Arylsulfatase from Alteromonas carrageenovora. Microbiology 141: 2897-2904.
2. Beil, S., H. Kehrli, J. Peter, W. Staudenmann, A. M. Cook, T. Leisinger, and M. A. Kertesz. 1995. Purification and characterization of the arylsulfatase synthesized by Pseudomonas aeruginosa PAO during growth in sulfate-free medium and cloning of the arylsulfatase gene (atsA). Eur. J. Biochem. 229: 385-394.
3. Chung, W. K. and G. M. King. 2001. Isolation, characterization, and polyaromatic hydrocarbon degradation potential of aerobic bacteria from marine macrofaunal burrow sediments and description of Lutibacterium anuloederans gen. nov., sp. nov., and Cycloclasticus spirillensus sp. nov. Appl. Environ. Microbiol. 67: 5585-5592.
4. Dodgson, K. S. and R. G. Price. 1962. A note on the determination of the ester sulfate content of sulfated polysaccharides. Biochem. J. 84: 350-356.
5. Edward, U., T. Rogall, H. Blocker, M. Emde, and E. C. Bottger. 1989. Isolation and direct complete determination of entire genes. Nucleic Acids Res. 17: 7843-7853.
6. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
7. Felsenstein, J. 1993. PHYLIP (phylogenetic inference package) version 3.5c. Seattle, University of Washington, U.S.A.
8. Fitch, W. M. and E. Margoliash. 1967. Construction of phylogenetic trees. Science 155: 279-284.
9. Gonzalez, J. M. and M. A. Moran. 1997. Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater. Appl. Environ. Microbiol. 63: 4237-4242.
10. Gonzalez, J. M., F. Mayer, M. A. Moran, R. E. Hodson, and W. B. Whitman. 1997. Sagittula stellata gen. nov., sp. nov., a lignin-transforming bacterium from a coastal environment. Int. J. Syst. Bacteriol. 47: 773-780.
11. Hoshi, M. and T. Moriya. 1980. Arylsulfatase of sea-urchin sperm. 2. Arylsulfatase as a lysine of sea-urchins. Dev. Biol. 74: 343-350.
12. Iwamoto, Y., R. Araki, K. Iriyama, T. Oda, H. Fukuda, S. Hayashida, and T. Muramatsu. 2001. Purification and characterization of bifunctional alginate lyase from Alteromonas sp. strain no. 272 and its action on saturated oligomeric substrates. Biosci. Biotechnol. Biochem. 65: 133-142.
13. Jukes, T. S. and C. R. Cantor. 1969. Evolution of protein molecules, pp. 21-132. In H. N. Munro (ed.), Mammalian Protein Metabolism. Academic Press, New York, U.S.A.
14. Kertesz, M. A. 1999. Riding the sulfur cycle-metabolism of sulfonates and sulfate esters in Gram-negative bacteria. FEMS Microbiol. Rev. 24: 135-175.
15. Kovacs, N. 1956. Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178: 703.
16. Ledyard, K. M., E. F. DeLong, and J. W. H. Dacey. 1993. Characterization of a DMSP-degrading bacterial isolate from the Sargasso Sea. Arch. Microbiol. 160: 312-318.
17. Lee, J. S., D. S. Joo, S. Y. Cho, J. H. Ha, and E. H. Lee. 2000. Purification and characterization of extracellular chitinase produced by marine bacterium, Bacillus sp. LJ-25. J. Microbiol. Biotechnol. 10: 307-311.
18. Marzluf, G. A. 1997. Molecular genetics of sulfur assimilation in filamentous fungi and yeast. Annu. Rev. Microbiol. 51: 73-96.
19. Miech, C., T. Dierks, T. Selmer, K. von Figura, and B. Schmidt. 1998. Arylsulfatase from Klebsiella pneumoniae carries a formylglycine generated from a serine. J. Biol. Chem. 273: 4835-4837.
20. Milanesi, A. A. and J. W C. Bind. 1972. Lysosomal enzymes in aquatic species II. Distribution and particle properties of thermally acclimated muscle lysosomes of rainbow trout Salmo gairdeneri. Comp. Biochem. Physiol. 41: 473-491.
21. Murooka, Y. and T. Harada. 1981. Regulation of derepressed synthesis of arylsulfatase by tyramine oxidase in Salmonella typhimurium. J. Biol. Chem. 145: 796-802.
22. Roberton, A. M. and D. P. Wright. 1997. Bacterial glycosulfatases and sulphomucin degradation. Can. J. Gastroenterol. 11: 361-366.
23. Saitou, N. and M. Nei. 1987. The neighbor joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
24. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, 2nd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, U.S.A.
25. Selby, H. H. and R. L. Whistler. 1993. Agar, pp. 87-103. In Whistler, R. L. and BeMiller, J. N. (eds.), Industrial Gums. Academic Press, New York, U.S.A.
26. Seo, H. J., J. H. Kim, D. S. Byun, and H. R. Kim. 2001. Purification and characterization of arylsulfatase produced from Sphingomonas sp. nov. pp. 1575-1578, 75th meeting of Japanese Society of Fisheries Science, Yokohama, Japan.
27. Sorokin, D. Y. 1995. Sulfitobacter pontiacus gen. nov., sp. nov.: A new heterotrophic bacterium from the Black Sea, specialized on sulfite oxidation. Microbiology 64: 354-365.
28. Stackebrandt, E. and B. M. Goebel. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44: 846-849.
29. Vera, J., R. Alvarez, E. Murano, J. C. Slebe, and O. Leon. 1998. Identification of a marine agarolytic Pseudoalteromonas isolate and characterization of its extracellular agarase. Appl. Environ. Microbiol. 64: 4378-4383.
30. Wayne, L. G., D. J. Brenner, R. R. Colwell, P. A. D. Grimont, O. Kandler, M. I. Krichewsky, L. H. Moore, W. E. C. Moore, R. G. E. Murray, E. Stackebrandt, M. P. Starr, and H. G. Trueper. 1987. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37: 463-464.
31. Woes, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51: 221-271.
32. Yabuuchi, E., Y. Kosako, T. Naka, S. Suzuki, and I. Yano. 1999. Proposal of Sphingomonas suberifaciens (van Bruggen, Jochimsen and Brown, 1990) Comb. nov., Sphingomonas natatoria (Sly, 1985) Comb. nov., Sphingomonas ursincola (Yurkov et al., 1997) Comb. nov., and emendation of the genus Sphingomonas. Microbial Immunol. 43: 339-349.
33. Yoon, H. S. and Y. H. Park. 1984. Studies on the composition of agarose and agaropectin in agar-agar. Bull. Korean Fish. Soc. 24: 27-33.