Biodiversity of rice (Oryza sativa L.) and sugarcane (Saccharum officinarum L.) rhizosphere pseudomonads

Indian Journal of Experimental Biology

Volumn 43, Issue 1, 2005, Pages 84-89

  Rameshkumar, N ^a   Thirumalai Arasu, V ^a   Gunasekaran, P ^a  

^a MADURAI KAMARAJ UNIVERSITY   (India)

Author keywords

Finger printing; Fluorescent pseudomonads; PCR; PGPR; Pseudomonas; RAPD; Rhizobacteria

Indexed keywords

ACETIC ACID; BIOCHEMISTRY; BIODIVERSITY; DNA; FLUORESCENCE; FUNGI; SUGAR CANE;

ANTIFUNGAL ACTIVITY; FLUORESCENT PSEUDOMONADS; RANDOM AMPLIFICATION OF POLYMORPHIC (RAPD); RHIZOSPHERE;

CROPS;

BACTERIAL DNA;

ARTICLE; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA FINGERPRINTING; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; PSEUDOMONAS; RHIZOME; RICE; SUGARCANE;

BACTERIAL TYPING TECHNIQUES; DNA FINGERPRINTING; DNA, BACTERIAL; ORYZA SATIVA; PSEUDOMONAS; RHIZOME; SACCHARUM; SOIL MICROBIOLOGY;

ACETIC ACID; BIOCHEMISTRY; BIODIVERSITY; FLUORESCENCE; FUNGI; NUCLEIC ACIDS; RICE; SUGAR CANE;

ORYZA SATIVA; PSEUDOMONAS; PSEUDOMONAS FLUORESCENS GROUP; RHIZOBIALES; SACCHARUM; SACCHARUM HYBRID CULTIVAR; SACCHARUM OFFICINARUM;

EID: 11444259505     PISSN: 00195189     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. Chanway C P, Turkington R & Holl F B, Ecological implication of specificity between plants and rhizosphere microorganisms. Adv Ecol Res, 21 (1991) 121.
2. Kloepper J W & Schroth M N, Plant growth-promoting rhizobacteria on radishes. Proc Int Conf on Plant Patho Bact, 2 (1978) 879.
3. Click B R, The enhancement of plant growth by free-living bacteria. Can J Microbiol, 41 (1995) 109.
4. Kloepper J W, Lifshitz R & Zablotowicz R M, Free-living bacterial inocula for enhancing crop productivity. Trends Biotechnol, 7 (1989) 39.
5. Holloway B, Pseudomonas in the late twentieth century, in Pseudomonas molecular biology and biotechnology, edited by Galli E, Silver S & Witholt B. (American Society of Microbiology Washington, DC), 1992, 1.
6. Rainey P B, Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environ Microbiol, 1 (1999) 243.
7. Hall J A, Perison D, Ghosh S & Click B R, Root elongation in various agronomic crops by plant growth promoting rhizobacterium Pseudomonas putida GRI 12-2. Israel J Plant Sci, 44 (1996) 37.
8. Elsherif M & Grossmann F, Comparative investigations on the antagonistic activity of fluorescent pseudomonads against Gaeumannomyces graminis Var. tritici in vitro and in vivo. Microbiol Res, 149 (1994) 371.
9. King E O, Ward M K & Raney D E, Two simple media for the demonstration of pyocyanin and fluorescein. J Lab Clin Med, 44 (1954) 301.
10. Collins C H & Lyne P H, Microbiological methods 5th edition. (Butterworth & Co. Ltd. London) 1984.
11. Patten C L & Click B R, Bacterial biosynthesis of indole-3-aceticacid. Can J Microbiol, 42 (1996) 207.
12. Subba Rao N S, Soil microorganisms and plant growth. (Oxford and IBH Publishing Co., New Delhi) 1977.
13. Byun M OK, Kaper J B & Ingram L O, Construction of a new vector for the expression of foreign gene in Zymomonas mobilis. J Ind Microbiol, 1 (1986) 9.
14. Alm E W, Oerther D B, Larsen N, Stahl D A & Raskin L, Oligonucleotide probe database. Appl Environ Microbiol, 62 (1996) 3557.
15. Neumann G & Römheld V, The release of root exudates as affected by the plant's physiological status in. The Rhizosphere edited by R Pinton, Z Varanini, and P Nannipieri. (Marcel Dekker Inc. New York, Basel) 2001, 41.
16. Graystone S J, Wang S, Campbell C D & Edwards A C, Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biol Biochem, 30 (1998) 369.
17. Lemanceau P, Corberand T, Gardan L, Latour X, Laguerre G, Boeufgras J M & Alabouvette C, Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.) on the diversity of soil population of fluorescent pseudomonads. Appl Environ Microbiol, 61 (1995) 1004.
18. De Leij F A A M, Whipps J M & Lynch, The use of colony development for the charcterization of bacterial communities in soil and on root. Microb Ecol. 27 (1994) 81.
19. Griffiths B S, Ritz K, Ebblewhite N & Dobson G, Soil microbial community structure : Effect of substrate loading rates. Soil Biol Biochem, 31 (1999) 145.
20. Lupwayi N Z, Rice W A & Clayton, Soil microbial diversity and community structure under wheat influenced by tillage and crop rotation. Soil Biol Biochem, 30 (1998) 1733.
21. Mahaffee W F & Kloepper J W, Temporal changes in the bacterial communities of soil, rhizosphere and endorhiza associated with field grown cucumber (Cucumis sativus L.). Microb Ecol, 34 (1997) 210.
22. Leagard D Em, Aquadro C F & Hunter J E, DNA sequence variation and phylogenetic relation ship among strains of Pseudomonas syringae pv. Syringae inferred from restriction site maps and restriction fragment length polymorphism. Appl Environ Microbiol, 59 (1993) 4180.
23. Picard C, Di Cello F, Ventura M, Fani R & Guckert A, Frequency and biodiversity of 2,4-diacetylfluroglucinol producing Bacteria isolate from the maize rhizosphere at different stages of plant growth. Appl Envir Microbiol, 66 (2000) 948.
24. Rameshkumar N, Thirumalai Arasu V & Gunasekaran P, Genotyping of antifungal compounds producing plant growth-promoting rhizobacteria, Pseudomonas fluorescens. Curr Sci, 82 (2002) 1463.
25. Duineveld B M, Kowalchuk G A, Keijzer A, Van Elsas J D & Van Veen J A, Analysis of bacterial communities in the rhizosphere of Chrysanthemum via Denaturing Gradient Gel Electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA. Appl Environ Microbiol, 67 (2001) 172.
26. Gomes NCM, Heuer H, Schönfeld J, Costa R, Medonça-Hagler L & Smalla K, Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant Soil, 232 (2001) 167.
27. Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heuer H & Berg G, Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: Plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol, 67 (2001) 4742.
28. Schmalenberger A & Tebbe C C, Bacterial community composition in the rhizosphere of a transgenic, herbicide-resistant maize (Zea mays) and comparison to its non-transgenic cultivar biosphere. FEMS Microbiol Ecol, 40 (2002) 29.