메뉴 건너뛰기




Volumn 149, Issue 1, 2005, Pages 38-52

A comparative study of MHC Class-II HLA-DRβ1*0401-Col II and HLA-DRβ1*0101-HA complexes: A theoretical point of view

Author keywords

Electrostatic interactions; MHC peptide interactions; Multipoles analysis

Indexed keywords

COLLAGEN TYPE 2; HEMAGGLUTININ; HLA DR ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2;

EID: 11244293581     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jsb.2004.08.003     Document Type: Article
Times cited : (13)

References (31)
  • 1
    • 84888246185 scopus 로고
    • Population analysis and electron densities from quantum mechanics
    • K.B. Lipkowitz D.B. Boyd VCH Publishers New York
    • S.M. Bachrach Population analysis and electron densities from quantum mechanics K.B. Lipkowitz D.B. Boyd Reviews in Computational Chemistry vol. 5 1994 VCH Publishers New York (Chapter 3)
    • (1994) Reviews in Computational Chemistry , vol.5
    • Bachrach, S.M.1
  • 2
    • 0037917458 scopus 로고    scopus 로고
    • MHCBN, a comprehensive database of mhc binding and non-binding peptides
    • Bhasin, M., Singh, H., Raghava, G.P.S., 2002. MHCBN, A comprehensive database of mhc binding and non-binding peptides. Nucleic Acids Res. (online). Available from: < http://www.imtech.res.in/raghava/mhcbn/index.html >
    • (2002) Nucleic Acids Res. (Online)
    • Bhasin, M.1    Singh, H.2    Raghava, G.P.S.3
  • 3
    • 0037367652 scopus 로고    scopus 로고
    • The use of bioinformatics for identifying class II-restricted T-cell epitopes
    • H. Bian, J.F. Reidhaar-Olson, and J. Hammer The use of bioinformatics for identifying class II-restricted T-cell epitopes Methods 29 2003 299 309
    • (2003) Methods , vol.29 , pp. 299-309
    • Bian, H.1    Reidhaar-Olson, J.F.2    Hammer, J.3
  • 6
    • 0031811850 scopus 로고    scopus 로고
    • MHCPEP, a database of MHC-binding peptides, update 1997
    • V. Brusic, G. Rudy, and L.C. Harrison MHCPEP, a database of MHC-binding peptides, update 1997 Nucleic Acids Res. 26 1998 368 371 Available from: < http://wehih.wehi.edu.au/mhcpep/ >
    • (1998) Nucleic Acids Res. , vol.26 , pp. 368-371
    • Brusic, V.1    Rudy, G.2    Harrison, L.C.3
  • 7
    • 0036827274 scopus 로고    scopus 로고
    • Constructing a useful tool for characterizing amino acid conformers by means of quantum chemical and graph theory indices
    • C. Cárdenas, M. Obregón, E. Llanos, E. Machado, H. Bohórquez, J.L. Villaveces, and M.E. Patarroyo Constructing a useful tool for characterizing amino acid conformers by means of quantum chemical and graph theory indices Comput. Chem. 26 2002 667 682
    • (2002) Comput. Chem. , vol.26 , pp. 667-682
    • Cárdenas, C.1    Obregón, M.2    Llanos, E.3    MacHado, E.4    Bohórquez, H.5    Villaveces, J.L.6    Patarroyo, M.E.7
  • 9
    • 0030701632 scopus 로고    scopus 로고
    • X-ray crystal structure of HLA-DR4 (DRA*0101, DRB1*0401) complexed with a peptide from human collagen II
    • A. Dessen, C.M. Lawrence, S. Cupo, D.M. Zaller, and D.C. Wiley X-ray crystal structure of HLA-DR4 (DRA*0101, DRB1*0401) complexed with a peptide from human collagen II Immunity 7 1997 473 481
    • (1997) Immunity , vol.7 , pp. 473-481
    • Dessen, A.1    Lawrence, C.M.2    Cupo, S.3    Zaller, D.M.4    Wiley, D.C.5
  • 10
    • 0842341771 scopus 로고
    • AM1, a new general purpose quantum mechanical molecular model
    • M.J.S. Dewar, E.G. Zoebisch, and E.F. Healy AM1, A new general purpose quantum mechanical molecular model J. Am. Chem. Soc. 107 1985 3902 3909
    • (1985) J. Am. Chem. Soc. , vol.107 , pp. 3902-3909
    • Dewar, M.J.S.1    Zoebisch, E.G.2    Healy, E.F.3
  • 11
    • 0032959873 scopus 로고    scopus 로고
    • Human collagen II peptide 256-271 preferentially binds to HLA-DR molecules associated with susceptibility to rheumatoid arthritis
    • B.-Y. Diab, N.C. Lambert, F-E. L'Faqihi, P. Loubet-Lescoulié, C. de Préval, and H. Coppin Human collagen II peptide 256-271 preferentially binds to HLA-DR molecules associated with susceptibility to rheumatoid arthritis Immunogenetics 49 1999 36 44
    • (1999) Immunogenetics , vol.49 , pp. 36-44
    • Diab, B.-Y.1    Lambert, N.C.2    L'Faqihi, F.-E.3    Loubet-Lescoulié, P.4    De Préval, C.5    Coppin, H.6
  • 12
    • 0344309217 scopus 로고    scopus 로고
    • Towards in silico prediction of immunogenic epitopes
    • D.R. Flower Towards in silico prediction of immunogenic epitopes Trends Immunol. 24 2003 667 674
    • (2003) Trends Immunol. , vol.24 , pp. 667-674
    • Flower, D.R.1
  • 14
    • 0029782111 scopus 로고    scopus 로고
    • Structures of an MHC class II molecule with covalently bound single peptides
    • D.H. Fremont, W.A. Hendrickson, P. Marrack, and J. Kappler Structures of an MHC class II molecule with covalently bound single peptides Science 272 1996 1001 1004
    • (1996) Science , vol.272 , pp. 1001-1004
    • Fremont, D.H.1    Hendrickson, W.A.2    Marrack, P.3    Kappler, J.4
  • 17
    • 0037018102 scopus 로고    scopus 로고
    • Structure of a complex of the human alpha/beta T cell receptor (TCR) HA1.7, influenza hemagglutinin peptide, and major histocompatibility complex class II molecule, HLA-DR4 (DRA*0101 and DRB1*0401), insight into TCR cross-restriction and alloreactivity
    • J. Hennecke, and D.C. Wiley Structure of a complex of the human alpha/beta T cell receptor (TCR) HA1.7, influenza hemagglutinin peptide, and major histocompatibility complex class II molecule, HLA-DR4 (DRA*0101 and DRB1*0401), insight into TCR cross-restriction and alloreactivity J. Exp. Med. 195 2002 571 581
    • (2002) J. Exp. Med. , vol.195 , pp. 571-581
    • Hennecke, J.1    Wiley, D.C.2
  • 19
    • 0034257025 scopus 로고    scopus 로고
    • An atoms-in-molecules study of the genetically-encoded amino acids, I. Effects of conformation and of tautomerization on geometric, atomic, and bond properties
    • C.F. Matta, and R.F. Bader An atoms-in-molecules study of the genetically-encoded amino acids, I. Effects of conformation and of tautomerization on geometric, atomic, and bond properties Proteins. 40 2000 310 329
    • (2000) Proteins. , vol.40 , pp. 310-329
    • Matta, C.F.1    Bader, R.F.2
  • 20
    • 0042171854 scopus 로고    scopus 로고
    • Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding
    • C.F. Matta, and R.F. Bader Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding Proteins 52 2003 360 399
    • (2003) Proteins , vol.52 , pp. 360-399
    • Matta, C.F.1    Bader, R.F.2
  • 21
    • 0037343239 scopus 로고    scopus 로고
    • Application of the quantum theory of atoms in molecules to selected physico-chemical and biophysical problems, focus on correlation with experiment
    • C.F. Matta, and R.F. Bader Application of the quantum theory of atoms in molecules to selected physico-chemical and biophysical problems, focus on correlation with experiment J. Comput. Chem. 24 2003 453 463
    • (2003) J. Comput. Chem. , vol.24 , pp. 453-463
    • Matta, C.F.1    Bader, R.F.2
  • 22
    • 0036174635 scopus 로고    scopus 로고
    • Binding interactions between peptides and proteins of the class II major Histocompatibility complex
    • B.J. McFarland, and C. Beeson Binding interactions between peptides and proteins of the class II major Histocompatibility complex Med. Res. Rev. 22 2002 168 203
    • (2002) Med. Res. Rev. , vol.22 , pp. 168-203
    • McFarland, B.J.1    Beeson, C.2
  • 24
    • 0036134844 scopus 로고    scopus 로고
    • HLA-DR1 (DRB1*0101) and DR4 (DRB1*0401) use the same anchor residues for binding an immunodominant peptide derived from human type collagen II
    • E.F. Rosloniec, K.B. Whittington, D.M. Zaller, and A.H. Kang HLA-DR1 (DRB1*0101) and DR4 (DRB1*0401) use the same anchor residues for binding an immunodominant peptide derived from human type collagen II J. Immunol. 168 2002 253 259
    • (2002) J. Immunol. , vol.168 , pp. 253-259
    • Rosloniec, E.F.1    Whittington, K.B.2    Zaller, D.M.3    Kang, A.H.4
  • 25
    • 1042301998 scopus 로고    scopus 로고
    • Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization
    • H.D. Schafroth, and C.A. Floudas Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization Proteins 54 2004 534 556
    • (2004) Proteins , vol.54 , pp. 534-556
    • Schafroth, H.D.1    Floudas, C.A.2
  • 27
    • 0036169191 scopus 로고    scopus 로고
    • Modeling MHC class II molecules and their bound peptides as expressed at the cell surface
    • Á. Simon, I. Simona, and É. Rajnavölgyib Modeling MHC class II molecules and their bound peptides as expressed at the cell surface Mol. Immunol. 38 2002 681 687
    • (2002) Mol. Immunol. , vol.38 , pp. 681-687
    • Simon, Á.1    Simona, I.2    Rajnavölgyib, É.3
  • 30
    • 0038049454 scopus 로고    scopus 로고
    • MHC allele-specific binding of a malaria peptide makes it become promiscuous on fitting a glycine residue into pocket 6
    • L.E. Vargas, C.A. Parra, L.M. Salazar, F. Guzmán, M. Pinto, and M.E. Patarroyo MHC allele-specific binding of a malaria peptide makes it become promiscuous on fitting a glycine residue into pocket 6 Biochem. Biophys. Res. Commun. 307 2003 148 156
    • (2003) Biochem. Biophys. Res. Commun. , vol.307 , pp. 148-156
    • Vargas, L.E.1    Parra, C.A.2    Salazar, L.M.3    Guzmán, F.4    Pinto, M.5    Patarroyo, M.E.6
  • 31
    • 0034995149 scopus 로고    scopus 로고
    • Mutations changing the kinetics of class II MHC peptide exchange
    • N. Wilson, D. Fremont, P. Marrack, and J. Kappler Mutations changing the kinetics of class II MHC peptide exchange Immunity 14 2001 513 522
    • (2001) Immunity , vol.14 , pp. 513-522
    • Wilson, N.1    Fremont, D.2    Marrack, P.3    Kappler, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.