Automated characterization of gene expression patterns with an atlas of the mouse brain

Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings

Volumn 26 IV, Issue , 2004, Pages 2917-2920

  Carson, J P ^a   Ju, T ^b   Thaller, C ^a   Warren, J ^b   Bello, M ^c   Kakadiaris, I ^c   Chiu, W ^a   Eichele, G ^d  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b The NanoCarbon Center and Welch Institute for Advanced Materials   (United States)

^c University of Houston ^*  (United States)

^d MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

Author keywords

Annotation; Brain atlas; Gene expression; Subdivision mesh

Indexed keywords

ALGORITHMS; COMPUTATIONAL METHODS; SENSITIVITY ANALYSIS; SIGNAL DETECTION; TISSUE;

ANNOTATION; BRAIN ATLAS; GENE EXPRESSION; SUBDIVISION MESH;

GENES;

EID: 11144313139     PISSN: 05891019     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (12)

1. S. Gong, C. Zheng, M. L. Doughty, K. Losos, N. Didkovsky, U. B. Schambra, N. J. Nowak, A. Joyner, G. Leblanc, M. E. Hatten, and N. Heintz, "A gene expression atlas of the central nervous system based on bacterial artificial chromosomes," Nature, vol. 425, pp. 917-25, 2003.
2. J. P. Carson, C. Thaller, and G. Eichele, "A transcriptome atlas of the mouse brain at cellular resolution," Curr Opin Neurobiol, vol. 12, pp. 562-5, 2002.
3. D. C. Van Essen, "Windows on the brain: the emerging role of atlases and databases in neuroscience," Curr Opin Neurobiol, vol. 12, pp. 574-9, 2002.
4. H. M. Kerstens, P. J. Poddighe, and A. G. Hanselaar, "A novel in situ hybridization signal amplification method based on the deposition of biotinylated tyramine," J Histochem Cytochem, vol. 43, pp. 347-52., 1995.
5. J. P. Carson, "Quantitative annotation and analysis of gene expression patterns with an atlas of the mouse brain," Ph.D. dissertation, Structural and Computational Biology and Molecular Biophysics program. Baylor College of Medicine, Houston, 2004.
6. J. C. Russ, The image processing handbook, 4th ed. Boca Raton, Fla.: CRC Press, 2002.
7. F. Valverde, Golgi atlas of the postnatal mouse brain. Wien; New York: Springer-Verlag, 1998.
8. J. Warren and H. Weimer, Subdivision methods for geometric design: a constructive approach. San Francisco: Morgan Kaufmann, 2002.
9. T. Ju, J. Warren, G. Eichele, C. Thaller, W. Chiu, and J. Carson, "A geometric database for gene expression data," presented at Eurographics Symposium on Geometry Processing, Aachen, Germany, 2003.
10. I. Kakadiaris, M. Bello, S. Arunachalam, W. Kang, T. Ju, J. Warren, J. Carson, W. Chiu, C. Thaller, and G. Eichele, "Landmark-driven, Atlas-based Segmentation of Mouse Brain Tissue Slices Containing Gene Expression Data," unpublished.
11. O. Braissant, T. Gotoh, M. Loup, M. Mori, and C. Bachmann, "L-arginine uptake, the citrulline-NO cycle and arginase II in the rat brain: an in situ hybridization study," Brain Res Mol Brain Res, vol. 70, pp. 231-41, 1999.
12. C. Niehrs and N. Pollet, "Synexpression groups in eukaryotes," Nature, vol. 402, pp. 483-7, 1999.