Classification of two-dimensional fluorescence spectra using self-organizing maps

Biochemical Engineering Journal

Volumn 22, Issue 2, 2005, Pages 135-144

  Rhee, Jong Il ^a   Lee, Kum Il ^a   Kim, Chun Kwang ^a   Yim, Yong Sik ^a   Chung, Sang Wook ^a   Wei, Jiaqiu ^b   Bellgardt, Karl Heinz ^b  

^a Chonnam National University   (South Korea)

^b LEIBNIZ UNIVERSITY HANNOVER   (Germany)

Author keywords

2D spectrofluorometer; Bioprocess monitoring; Fermentation; Self organizing map; Sensors

Indexed keywords

EMISSION WAVELENGTHS; FLUORESCENCE SPECTRA; SPECTRA SUBTRACTION; TWO-DIMENSIONAL (2D) SPECTROFLUOROMETERS;

BIOCHEMISTRY; DATA REDUCTION; ESCHERICHIA COLI; FLUORESCENCE; INFORMATION MANAGEMENT; SELF ORGANIZING MAPS; SPECTROMETERS;

FERMENTATION;

ARTICLE; BIOPROCESS; BIOSENSOR; CLASSIFICATION; ESCHERICHIA COLI; FERMENTATION MODEL; FERMENTATION MONITORING; FERMENTATION OPTIMIZATION; FERMENTATION TECHNIQUE; FLUORESCENCE SPECTROSCOPY; MONITOR; NONHUMAN; PRIORITY JOURNAL; PROCESS MODEL; SACCHAROMYCES CEREVISIAE; SPECTROFLUOROMETRY;

ESCHERICHIA COLI;

EID: 11144263731     PISSN: 1369703X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bej.2004.09.008     Document Type: Article

References (26)

1. B. Sonnleitner Instrumentation of biotechnological processes Advances in Biochemical Engineering and Biotechnology 2000 Springer Berlin pp. 1-64
2. P. Harms, Y. Kostov, and G. Rao Bioprocess monitoring Curr. Opin. Biotechnol. 13 2002 124 127
3. S. Marose, C. Lindemann, R. Ulber, and T. Scheper Optical sensor systems for bioprocess monitoring Trends Biotechnol. 17 1999 30 33
4. J.K. Li, E.C. Asali, and A.E. Humphrey Monitoring cell concentration and activity by multiple excitation fluorometry Biotechnol. Prog. 7 1992 21 27
5. K. Schügerl, C. Lindemann, S. Marose, T. Scheper, Two-dimensional fluorescence spectroscopy for on-line bioprocess monitoring, Course material for the Bioprocess Engineering Course, Supertar, Island of Brac, Croatia, 27 September-2 October, 1998.
6. B. Tartakovsky, M. Scheintuch, J.M. Hilmer, and T. Scheper Application of scanning fluorometery for monitoring of a fermentation process Biotechnol. Prog. 12 1996 126 131
7. J. Mukherjee, C. Lindermann, and T. Scheper Fluorescence monitoring during cultivation of Enterobacter aerogenes at different oxygen levels Appl. Microbiol. Biotechnol. 52 1999 489 494
8. E. Skibsted, C. Lindemann, C. Roca, and L. Olsson On-line bioprocess monitoring with a multi-wavelength fluorescence sensor using multivariate calibration J. Biotechnol. 88 2001 47 57
9. S. Marose, C. Lindemann, and T. Scheper Two-dimensional fluorescence spectroscopy: a new tool for on-line bioprocess monitoring Biotechnol. Prog. 14 1998 63 74
10. C. Lindemann, S. Marose, H.O. Nielson, and T. Scheper 2-Dimensional fluorescence spectroscopy for on-line bioprocess monitoring Sens. Actuators B 51 1998 271 277
11. L.D. Low, S. Kalelkar, and E.R. Dow Self-organizin maps for the analysis of NMR spectra BioSilico 2 2004 157 163
12. M. Kolehmainen, P. Ronkko, and O. Raatikainen Monitoring of yeast fermentation by ion mobility spectrometry measurement and data visualization with self-organizing maps Anal. Chim. Acta 484 2003 93 100
13. Z. Debeljak, M. Strapac, and M. Medic-Saric Application of self-organizing maps for the classification of chromatographic systems and prediction of values of chromatographic quantities J. Chromatogr. A 925 2001 31 40
14. H. Yang, I.R. Lewis, and P.R. Griffiths Raman spectrometry and neural networks for the classification of wood type. 2. Kohonen self-organizing maps Spectrochim. Acta, Part A 55 1999 2783 2791
15. S.Y. Chung, K.H. Seo, and J.I. Rhee Influence of culture conditions on the production of extra-cellular 5-aminolevulinic acid (ALA) by recombinant E. coli Proc. Biochem. 40 2005 385 394
16. H. Shimizu, K. Araki, S. Shioya, and K.I. Suga Optimal production of glutathione by controlling the specific growth rate of yeast in fed-batch culture Biotechnol. Bioeng. 38 1991 196 205
17. F. Tietze Enzymic method for quantitative determination of nanogram amount of total and oxidized glutathione Anal. Biochem. 27 1969 502 522
18. N. Teshima, H. Katsumate, M. Kurihara, T. Sakai, and T. Kawashima Flow-injection determination of copper(II) based on its catalysis on the redox reaction of cysteine with iron(III) in the presence of 1,10-phenanthroline Talanta 50 1999 41 47
19. T. Kohonen The self-organizing map Neurocomputing 21 1998 1 6
20. J. Vesanto SOM-based data visualization methods Intell. Data Anal. 3 1999 111 126
21. T. Kohonen Self-Organizing Maps third ed. 2001 Springer Berlin, Germany
22. J. Zupan, and J. Gasteiger Neural Networks in Chemistry and Drug Design second ed. 1999 Wiley-VCH Weinheim, USA
23. Maltlab manual, version 6.1, The Mathworks Inc., USA (2002).
24. D.R. Baughman, and Y.A. Liu Neural Networks in Bioprocessing and Chemical Engineering 1995 Academic Press San Diego, USA
25. B. Tartakovsky, L.A. Lishman, and R.L. Legge Application of multi-wavelength fluorometry for monitoring wastewater treatment process dynamics Water Res. 30 1996 2941 2948
26. G. Wolf, J.S. Almeida, C. Pinheiro, V. Correia, C. Rodrigues, M.A.M. Reis, and J.G. Crespo Two-dimensional fluorometry coupled with artificial neural networks: a novel method for on-line monitoring of complex biological processes Biotechnol. Bioeng. 72 2001 297 306