The small-subunit processome is a ribosome assembly intermediate

Eukaryotic Cell

Volumn 3, Issue 6, 2004, Pages 1619-1626

  Bernstein, Kara A ^a   Gallagher, Jennifer E G ^a   Mitchell, Brianna M ^a   Granneman, Sander ^a   Baserga, Susan J ^a  

^a YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MPP10 PROTEIN, FUNGAL; PHOSPHOPROTEIN; RIBONUCLEOPROTEIN; RIBOSOME PROTEIN; RNA 18S; RNA PRECURSOR; RNA, U3 SMALL NUCLEOLAR; SACCHAROMYCES CEREVISIAE PROTEIN; SMALL NUCLEOLAR RNA;

ARTICLE; BIOLOGICAL MODEL; CHEMISTRY; CONFORMATION; ELECTRON MICROSCOPY; FLUORESCENCE MICROSCOPY; IMMUNOPRECIPITATION; MACROMOLECULE; METABOLISM; NORTHERN BLOTTING; NUCLEOLUS; PROMOTER REGION; RIBOSOME; SACCHAROMYCES CEREVISIAE; TIME;

BLOTTING, NORTHERN; CELL NUCLEOLUS; IMMUNOPRECIPITATION; MACROMOLECULAR SUBSTANCES; MICROSCOPY, ELECTRON; MICROSCOPY, FLUORESCENCE; MODELS, BIOLOGICAL; NUCLEIC ACID CONFORMATION; PHOSPHOPROTEINS; PROMOTER REGIONS (GENETICS); RIBONUCLEOPROTEINS; RIBOSOMAL PROTEINS; RIBOSOMES; RNA PRECURSORS; RNA, RIBOSOMAL, 18S; RNA, SMALL NUCLEOLAR; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TIME FACTORS;

BACTERIA (MICROORGANISMS); SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 10944263470     PISSN: 15359778     EISSN: None     Source Type: Journal    
DOI: 10.1128/EC.3.6.1619-1626.2004     Document Type: Article

References (40)

1. Adams, C. C., J. Jakovlyevic, J. Roman, P. Harnpicharnchai, and J. L. J. Woolford. 2002. Saccharomyces cerevisiae nucleolar protein Nop7p is necessary for biogenesis of 60S ribosomal subunits. RNA 8:150-165.
2. Allmang, C., P. Mitchell, E. Petfalski, and D. Tollervey. 2000. Degradation of ribosomal RNA precursors by the exosome. Nucleic Acids Res. 28:1684-1691.
3. Chen, W., J. Bucaria, D. A. Band, A. Sutton, and R. Sternglanz. 2003. Enp1, a yeast protein associated with U3 and U14 snoRNAs, is required for pre-rRNA processing and 40S subunit synthesis. Nucleic Acids Res. 31:690-699.
4. Dragon, F., J. E. Gallagher, P. A. Compagnone-Post, B. M. Mitchell, K. A. Porwancher, K. A. Wehner, S. Wormsley, R. E. Settlage, J. Shabanowitz, Y. Osheim, A. L. Beyer, D. F. Hunt, and S. J. Baserga. 2002. A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417:967-970.
5. Dunbar, D. A., F. Dragon, S. J. Lee, and S. J. Baserga. 2000. A nucleolar protein related to ribosomal protein L7 is required for an early step in large ribosomal subunit biogenesis. Proc. Natl. Acad. Sci. USA 97:13027-13032.
6. Dunbar, D. A., S. Wormsley, T. M. Agentis, and S. J. Baserga. 1997. Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast. Mol. Cell. Biol. 17:5803-5812.
7. Eschrich, D., M. Buchhaupt, P. Kötter, and K.-D. Entian. 2002. Nep1p (Emg1p), a novel protein conserved in eukaryotes and archaea, is involved in ribosome biogenesis. Curr. Genet. 40:326-338.
8. Gavin, A. C., M. Bosche, R. Krause, P. Grandi, M. Marzioch, A. Bauer, J. Schultz, J. M. Rick, A. M. Michon, C. M. Cruciat, M. Remor, C. Hofert, M. Schelder, M. Brajenovic, H. Ruffner, A. Merino, K. Klein, M. Hudak, D. Dickson, T. Rudi, V. Gnau, A. Bauch, S. Bastuck, B. Huhse, C. Leutwein, M. A. Heurtier, R. R. Copley, A. Edelmann, E. Querfurth, V. Rybin, G. Drewes, M. Raida, T. Bouwmeester, P. Bork, B. Seraphin, B. Kuster, G. Neubauer, and G. Superti-Furga. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415:141-147.
9. Grandi, P., V. Rybin, J. Baßler, E. Petfalski, D. Strauß, M. Marzioch, T. Schäfer, B. Kuster, H. Tschochner, D. Tollervey, A.-C. Gavin, and E. Hurt. 2002. 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol. Cell 10:105-115.
10. Granneman, S., and S. J. Baserga. 2004. Ribosome biogenesis: of knobs and RNA processing. Exp. Cell Res. 296:43-50.
11. Held, W. A., S. Muizushima, and M. Nomura. 1973. Reconstitution of Escherichia coli 30S ribosomal subunits from purified molecular components. J. Biol. Chem. 248:5720-5730.
12. Huh, W. K., J. V. Falvo, L. C. Gerke, A. S. Carroll, R. W. Howson, J. S. Weissman, and E. K. O'Shea. 2003. Global analysis of protein localization in budding yeast. Nature 425:686-691.
13. Ito, T., T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, and Y. Sakaki. 2001. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 98:4569-4574.
14. Jensen, T. H., M. Neville, J. C. Rain, T. McCarthy, P. Legrain, and M. Rosbash. 2000. Identification of novel Saccharomyces cerevisiae proteins with nuclear export activity: cell cycle-regulated transcription factor Ace2p shows cell cycle independent nucleocytoplasmic shuttling. Mol. Biol. Cell 20:8047-8058.
15. Knop, M., K. Siegers, G. Pereira, W. Zachiariae, B. Winsor, K. Nasmyth, and E. Schiebel. 1999. Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines. Yeast 15:963-972.
16. Kressler, D., P. Linder, and J. de la Cruz. 1999. Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae. Mol. Cell. Biol. 19:7897-7912.
17. Krogan, N. J., W. T. Peng, G. Cagney, M. D. Robinson, R. Haw, G. Zhong, X. Guo, X. Zhang, V. Canadien, D. P. Richards, B. K. Beattie, A. Lalev, W. Zhang, A. P. Davierwala, S. Mnaimneh, A. Starostine, A. P. Tikuisis, J. Grigull, N. Datta, J. E. Bray, T. R. Hughes, A. Emili, and J. F. Greenblatt. 2004. High-definition macromolecular composition of yeast RNA-processing complexes. Mol. Cell 13:225-239.
18. Kruiswijk, T., R. J. Planta, and J. M. Krop. 1978. The course of the assembly of ribosomal subunit in yeast. Biochim. Biophys. Acta 517:378-389.
19. Kumar, A., S. Agarwal, J. A. Heyman, S. Matson, M. Heidtman, S. Piccirillo, L. Umansky, A. Drawid, R. Jansen, Y. Liu, K. H. Cheung, P. Miller, M. Gerstein, G. S. Roeder, and M. Snyder. 2002. Subcellular localization of the yeast proteome. Genes Dev. 16:707-719.
20. Lee, S. J., and S. J. Baserga. 1999. Imp3p and Imp4p, two specific components of the U3 small nucleolar ribonucleoprotein that are essential for pre-18S rRNA processing. Mol. Cell. Biol. 19:5441-5452.
21. Liu, P. C. C., and D. J. Thiele. 2001. Novel stress-responsive genes EMG1 and NOP14 encode conserved, interacting proteins required for 40S ribosome biogenesis. Mol. Biol. Cell 12:3644-3657.
22. Longtine, M. S., A. R. McKenzie, D. J. Demarini, N. G. Shah, A. Wach, A. Brachat, P. Philippsen, and J. R. Pringle. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961.
23. Mager, W. H., R. J. Planta, J. G. Ballesta, J. C. Lee, K. Mizuta, K. Suzuki, J. R. Warner, and J. Woolford. 1997. A new nomenclature for the cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Nucleic Acids Res. 25:4872-4875.
24. Milkereit, P., O. Gadal, A. Podtelejnikov, S. Trumtel, N. Gas, E. Petfalski, D. Tollervey, M. Mann, E. Hurt, and H. Tschochner. 2001. Maturation and intranuclear transport of pre-ribosomes requires Noc proteins. Cell 105:499-509.
25. Milkereit, P., H. Kühn, N. Gas, and H. Tschochner. 2003. The pre-ribosomal network. Nucleic Acids Res. 31:799-804.
26. Milkereit, P., D. Strauss, J. Bassler, O. Gadal, H. Kuhn, S. Schutz, N. Gas, J. Lechner, E. Hurt, and H. Tschochner. 2003. A Noc complex specifically involved in the formation and nuclear export of ribosomal 40 S subunits. J. Biol. Chem. 278:4072-4081.
27. Mizushima, S., and M. Nomura. 1980. Assembly mapping of 30S ribosomal proteins from E. coli. Nature 226:1214-1218.
28. Nomura, M. 1973. Assembly of bacterial ribosomes. Science 179:864-873.
29. Peng, W. T., M. D. Robinson, G. Cagney, Q. Morris, A. P. Davierwala, J. Grigull, X. Yang, W. Zhang, N. Mitsakakis, O. W. Ryan, N. Datta, J. Vladimir, C. Pal, V. Canadien, D. Richards, B. Beattie, L. F. Wu, S. J. Altschuler, S. Roweis, B. J. Frey, A. Emili, J. F. Greenblatt, and T. R. Hughes. 2003. A panoramic view of yeast noncoding RNA processing. Cell 113:919-933.
30. Planta, R. J., and W. H. Mager. 1998. The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Yeast 14:471-477.
31. Roos, J., J. M. Luz, S. Centoducati, R. Sternglanz, and W. J. Lennarz. 1997. ENP1, an essential gene encoding a nuclear protein that is highly conserved from yeast to humans. Gene 185:137-146.
32. Sasaki, T., A. Toh-e, and Y. Kikuchi. 2000. Yeast Krr1p physically and functionally interacts with a novel essential Kri1p, and both proteins are required for 40S ribosome biogenesis in the nucleolus. Mol. Cell. Biol. 20:7971-7979.
33. Schäfer, T., D. Straub, E. Petfalski, D. Tollervey, and E. Hurt. 2003. The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes. EMBO J. 22:1370-1380.
34. Schwirzke, M., A. Gnirke, P. Bork, D. Tarin, and U. H. Weidle. 1998. Differential gene expression in mammary carcinoma cell lines: identification of DRIM, a new gene down-regulated in metastasis. Anticancer Res. 18:1409-1421.
35. Staehelin, T., and M. Meselson. 1966. In vitro recovery of ribosomes and of synthetic activity from synthetically inactive ribosomal subunits. J. Mol. Biol. 15:245-249.
36. Traub, P., and M. Nomura. 1968. Structure and function of E. coli ribosomes. V. Reconstitution of functionally active 30S ribosomal particles from RNA and proteins. Proc. Natl. Acad. Sci. USA 59:777-784.
37. Uetz, P., L. Giot, G. Cagney, T. A. Mansfield, R. S. Judson, J. R. Knight, D. Lockshon, V. Narayan, M. Srinivasan, P. Pochart, A. Qureshi-Emili, Y. Li, B. Godwin, D. Conover, T. Kalbfleisch, G. Vijayadamodar, M. J. Yang, M. Johnston, S. Fields, and J. M. Rothberg. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403:623-627.
38. Utama, B., D. Kennedy, K. Ru, and J. S. Mattick. 2002. Isolation and characterization of a new nucleolar protein, Nrap, that is conserved from yeast to humans. Genes Cells 7:115-132.
39. Venema, J., and D. Tollervey. 1999. Ribosome synthesis in Saccharomyces cerevisiae. Annu. Rev. Genet. 33:261-311.
40. Wehner, K. A., and S. J. Baserga. 2002. The sigma 70-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis. Mol. Cell 9:329-339.