Genetic diversity and relationship in Korean ginseng (Panax schinseng) based on RAPD analysis

Korean Journal of Genetics

Volumn 25, Issue 3, 2003, Pages 181-188

  Kim, Changkyun ^a   Choi, Hong Keun ^a  

^a Ajou University   (South Korea)

Author keywords

AMOVA; Genetic variance; Panax schinseng; RAPD

Indexed keywords

ARTICLE; CONTROLLED STUDY; DNA SCREENING; GENE CLUSTER; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIABILITY; GINSENG; MEDICINAL PLANT; NONHUMAN; PANAX QUINQUEFOLIUS; PANAX SCHINSENG; PARSIMONY ANALYSIS; PHYLOGENETIC TREE; PLANT GENETICS; POPULATION DYNAMICS; RANDOM AMPLIFIED POLYMORPHIC DNA;

PANAX; PANAX GINSENG; PANAX QUINQUEFOLIUS;

EID: 10944239042     PISSN: 02545934     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (34)

1. Aagard JE, Krutovskii KV and Strauss SH (1998) RAPDs and allozymes exhibit similar levels of diversity and differentiation among populations and races of Douglas fir. Heredity 81: 69-78.
2. Ayres DR and Ryan FJ (1999) Genetic diversity and structure of the narrow endemic Wyethia reticulata and its congener W. bolanderi (Asteraceae) using RAPD and allozyme techniques. American Journal of Botany 86: 343-353.
3. Barlett MS (1937) Some examples of statistical methods of research in agriculture and applied biology. J. Roy. Stat. Soc. Suppl. 4: 137-170.
4. Belaj A, Satovic E, Rallo L and Trujillo I (2002) Genetic diversity and relationships in olive (Olea europaea L.) germplasm collections as determined by randomly amplified polymorphic DNA. Theor. Appl. Genet. 105: 638-644.
5. Carlson AW (1986) Ginseng: America's botanical drug connection to the Orient. Econ. Bot. 40: 233-249.
6. Cheung KS, Kwan HS, But BPH and Shaw P (1994) Pharmacognostical identification of American and oriental ginseng roots by genomic fingerprinting using arbitarily primed polymerase chain reaction (AP-PCR). J. Ethnopharmacol. 42: 67-69.
7. Choi H-K and Wen J (2000) A phylogenetic analysis of Panax (Araliaceae): integrating cpDNA restriction site and nuclear rDNA ITS sequence data. Plant Syst. Evol. 224: 109-120.
8. Doyle JJ and Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
9. Dweikat I, Mackenzie S, Levy M and Ohm H (1993) Pedigree assessment using RAPD-DGGE in cereal crop species. Theor. Appl. Genet. 85: 497-505.
10. Excoffier L (1992) WinAMPVA; Analysis of Molecular Variance, ver. 1.55. Genetic and Biometry Laboratory, University of Geneva.
11. Excoffier L, Smouse PE and Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
12. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
13. Fisher M and Matthies D (1998) RAPD variation in relation to population size and plant fitness in the rare Gentianella germanica (Gentianaceae). American Journal of Botany 85: 811-819.
14. Fisher M, Husi R, Prati D, Peintinger M, Kleunen M and Schmid B (2000) RAPD variation among and within small and large populations of the rare clonal plant Ranunculus repens (Ranunculaceae). American Journal of Botany 87: 1128-1137.
15. Godt MJW and Hamrick JL (1993) Genetic diversity and population structure in Tradescantia hirsuticaulis (Commelinaceae). American Journal of Botany 80: 959-966.
16. Han SH, Jung YH, Ko MH, Oh YS, Koh SC, Kim MH and Oh MY (1998) Phylogenetic relationships of the Dendropanax morbifera and D. trifidus based on PCR-RAPD. Korean J. Genetics 20: 173-181.
17. Hu J and Quiros CF (1991) Identification of broccoli and cauliflower cultivars with RAPD markers. Plant Cell Rep. 10: 505-511.
18. Hu SY (1976) The genus Panax (ginseng) in Chinese medicine. Econ. Bot. 30: 11-28.
19. Kim C and Choi H-K (1999) Cloning and structural analysis of partial nuclear rDNA from Bupleurum euphorbioides (Apiaceae). J. Plant Biol. 42: 133-138.
20. Kim H, Song M-J, Kim K-J, Lee C-W, Chang W-G and Kang K-H (1998) Genetic variation analysis of Korean Lotus (Nelumbo nucifera) using randomly amplified polymorphic DNA (RAPD) markers. Kor. J. Plant Tax. 28: 343-355.
21. Koller B, Lehmann A, McDermott JM and Gessler C (1993) Identification of Apple cultivars using RAPD markers. Theor. Appl. Genet. 85: 901-904.
22. Lim YP, Shin CS, Lee SJ, Youn YN and Jo JS (1993) Survey of proper primers and genetic analysis of Korean ginseng (Panax ginseng C.A. Meyer) variants using the RAPD technuque. Korean J. Ginseng Sci. 17: 153-158.
23. Ma XJ, Wang XQ, Sun SS, Xiao PG and Hong DY (1999) A study on RAPD fingerprintings of wild mountain ginseng (Panax ginseng). Acta Pharmaceutica Sinica 34: 312-316.
24. Ngan F, Shaw P, But P and Wang T (1999) Molecular authentication of Panax species. Phytochemistry 50: 787-791.
25. Perez T, Albornoz J and Dominguez A (1998) An evaluation of RAPD fragment reproducibility and nature. Molecular Ecology 7: 1347-1357.
26. Rohlf J (1998) NTSYS-pc. Numerical Taxonomy and Multivariate Analysis System, ver. 2.00. Exeter Software, Setauket, New York.
27. Sneath PHA and Sokal RR (1973) Numerical Taxonomy, the Principles and Practice of Numerical Classificaion. W.H. Freeman Co., San Francisco, pp. 96-103.
28. Song J-H, Kim N-S, Yi Y-S, Kim Y-J, Song J-M and Yi J-S (2002) Genetic variation of Quercus variabilities in Korea based on RAPD marker analysis. Korean J. Genetics 24: 189-195.
29. Stiles JL, Lemme C, Sonder S, Morshidi MB and Manshardt R (1993) Using randomly amplified polymorphic DNA for evaluating genetic relationships among papaya cultivars. Theor. Appl. Genet. 85: 697-701.
30. Swofford DL (1999) PAUP; Phylogenetic Analysis using Parsimony, ver. 4.02b. Sinaucer Assoc., Sunderland, MA.
31. Wen J and Zimmer EA (1996) Phylogeny and biogeography of Panax L.(the ginseng genus, Araliaceae): inferences from ITS sequences of nuclear ribosomal DNA. Mol. Phylogenet. Evol. 6: 167-177.
32. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA and Tingey SV (1990) DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Research 18: 6531-6535.
33. Yang X and Quiros C (1993) Identification of celery cultivars with RAPD markers. Theor. Appl. Genet. 86: 205-212.
34. Zhuravlev YN, Reunova GD, Artyukova EV, Kozyrenko MM and Muzarok TI (1998) Genetic variation of wild ginseng populations (RAPD analysis). Molecular Biology 32: 910-914.