Review on plant gene promoters

Acta Genetica Sinica

Volumn 31, Issue 12, 2004, Pages 1455-1464

  Zhang, Chun Xiao ^a   Wang, Wen Qi ^a   Jiang, Xiang Ning ^a   Chen, Xue Mei ^a  

^a BEIJING FORESTRY UNIVERSITY   (China)

Author keywords

Artificially fused bi directional promoter; Inducible promoter; Plant gene promoters; Temporary and spatial specific promoters

Indexed keywords

ARTIFICIALLY FUSED BIDIRECTIONAL PROMOTER; CONSTITUTIVE PROMOTER; DEVELOPMENT; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE FUSION; GENE INDUCTION; GENE STRUCTURE; GENETIC ENGINEERING; INDUCIBLE PROMOTER; NONHUMAN; PLANT GENETICS; PROMOTER REGION; REVIEW; SPATIAL SPECIFIC PROMOTER; TEMPORARY PROMOTER; TISSUE SPECIFICITY;

GENETIC ENGINEERING; PLANTS; PROMOTER REGIONS (GENETICS); TATA BOX;

EMBRYOPHYTA;

EID: 10844255601     PISSN: 03794172     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (77)

1. LU Jing, ZHAO Hua-Yan, HE Yi-Kun, SONG Yan-Ru. Advances and progresses of high promoter research and its application, Natural Science Progresses, 2004, 14(8): 856-862.
2. ZHU Yu-Xian, LI Yi. Modern Molecular Biology. Beijing: Higher Education Press, 1997.
3. Joshi C P. An inspection of the domain between putative TATA box and translation start site in 79 plant genes. Nucleic Acids Research, 1987, 15: 6643-6653.
4. LI Yi-Kun, WANG Jin-Fa. Advances of the studies on plant promoter. Chinese Bullentin of Botany, 1998, 15(Suppl.): 1-6.
5. Michael Carey S T S. Transcriptional Regulation in Eukaryotes Concepts, Strategies, and Techniques. Clod Spring Harbor Laboratory Press, 2001.
6. Huang W W, Bateman E. TATA elements direct bi-directional transcription by RNA polymerases II and III. Nucleic acids Res, 1996, 24(6): 1158-1163.
7. Jack J L, Richard H K, Jaro S. An inverted TATA box directs downstream transcription of the bone sialoprotein. Gene Biochen J, 1995, 310: 33-40.
8. Zhu Q, Lamb C. TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro. Plant Cell, 1995, 7(10): 1681-1689.
9. Colgan J M J. Cooperation between core promoter elements influences transcriptional activity in vivo. Proc Natl Acad Sci USA, 1995, 92(6): 1995-1999.
10. O'Shea-Greenfield A S S. Roles of TATA and initiator elements in determining the start site location and direction of RNA polymerase II transcription. J Biol Chem, 1992, 267 (2): 1391-1402.
11. Chua N H, Benfey P N. The cauliflower mosaic virus 35S promoter: combinatorial regulation of transcription on plants. Science, 1990, 250: 959-966.
12. Moon Y H, Song S K, Choi K W, Lee J S. Expression of a cDNA encoding Phytolacca insularis antiviral protein confers virus resistance on transgenic potato plants. Mol Cells, 1997, 7(6): 807-815.
13. Branen J K, Chiou T J, Engeseth N J. Overexpression of acyl carrier protein-1 alters fatty acid composition of leaf tissue in Arabidopsis. Plant Physiol, 2001, 127(1): 222-229.
14. Kim J C, Jeong J C, Park H C, Yoo J H, Koo, Y D, Yoon H W, Koo S C, Lee S H, Bahk J D, Cho M J. Cold accumulation of SCOF-1 transcripts is associated with transcriptional activation and mRNA stability. Mol Cells, 2001, 12(2): 204-208.
15. Sun L, Cal H, Xu W, Hu Y, Lin Z. CaMV 35S promoter directs beta-glucuronidase expression in Ganoderma lucidum and Pleurotus citrinopileatus. Mol Biotechnol, 2002, 20(3): 239-244.
16. Dey N, Maiti I B. Structure and promoter/leader deletion analysis of mirabilis mosaic virus (MMV) full-length transcript promoter in transgenic plants. Plant Mol Biol, 1999, 40(5): 771-782.
17. Naomi S S, Ichiro M. Constitutive Promoters Available for transgene expression instead of CaMV35S RNA promoter: Arabidopsis promoters of tryptophan synthase protein subunit and phytochrome B. Plant Biotechnology, 2002, 19 (1): 19-26.
18. Seagull R W. The plant cytoskeleton. Crit Rev Plant Sci, 1989, 8: 131-167.
19. Mcelroyd S, Zhang W G, Cao J. Isolation of an efficient actin promoter for use in rice transformation. The Plant Cell, 1990, 2: 163-171.
20. Subramanian S, Rajagopal B, Rock C D. Harlequin (hlq) and short blue root (sbr), two Arabidopsis mutants that ectopically express an abscisic acid- and auxin-inducible transgenic carrot promoter and have pleiotropic effects on morphogenesis. Plant Mol Biol, 2002, 49(1): 93-105.
21. Narusaka Y, Nakashima K, Shinwari Z K, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J, 2003, 34(2): 137-148.
22. ZHAO Hui-Wu, CHEN Yang-Jian, HU Yuan-Lei, GAO Yin, LIN Zhong-Ping. Construction of a trehalose-6-phosphate synthase gene driven by drought-responsive promoter and expression of drought-resistance in transgenic tobacco. Acta Botanica Sinica, 2000, 42(6): 616-619.
23. Xue G P. An AP2 domain transcription factor HvCBF1 activates expression of cold-responsive genes in barley through interaction with a (G/a) (C/t) CGAC motif. Biochim Biophys Acta, 2002, 1577(1): 63-72.
24. Brown, A P, Dunn M A, Goddard N J, Hughes M A. Identification of a novel low-temperature-response element in the promoter of the barley (Hordeum vulgare L.) gene blt101.1. Planta, 2001, 213(5): 770-780.
25. Czarnecka E, Key J L, Gurley W B. Regulatory domains of the Gmhsp17.5-E heat shock promoter of soybean. Mol Cell Biol, 1989, 9(8): 3457-3463.
26. Rieping M, Schoffl F. Synergistic effect of upstream sequences, CCAAT box elements, and HSE sequences for enhanced expression of chimaeric heat shock genes in transgenic tobacco. Mol Gen Genet, 1992, 231(2): 226-232.
27. Martinez-Hernandez A, Lopez-Ochoa L, Arguello-Astorga G, Herrera-Estrella L. Functional properties and regulatory complexity of a minimal RBCS light-responsive unit activated by phytochrome, cryptochrome, and plastid signals. Plant Physiol, 2002, 128(4): 1223-1233.
28. Yadav V, Kundu S, Chattopadhyay D, Negi P, Wei N, Deng X W, Chattopadhyay S. Light regulated modulation of Z-box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis. Plant J, 2002, 31(6): 741-753.
29. Wang Z Y, Kenigsbuch D, Sun L, Harel E, Ong M S, Tobin E M. A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene. Plant Cell, 1997, 9(4): 491-507.
30. Liu Z, Taub C C, McClung C R. Identification of an Arabidopsis thaliana ribulose-1,5-bisphosphate carboxylase/oxygenase activase (RCA) minimal promoter regulated by light and the circadian clock. Plant Physiol, 1996, 112(1): 43-51.
31. Song F. Goodman R M. Cloning and identification of the promoter of the tobacco Sar8.2b gene, a gene involved in systemic acquired resistance. Gene, 2002, 290(1-2): 115-124.
32. Hiraga S, Sasaki K, Yamakawa H, Mitsuhara I, and Toshima H M, Honma M, Ohashi Y. Wound-induced expression of a tobacco peroxidase is not enhanced by ethephon and suppressed by methyl jasmonate and coronatine. Plant Cell Physiol, 2000, 41(2): 165-170.
33. Sasaki K, Hiraga S, Ito H, Seo S, Matsui H M, Ohashi Y A. wound-inducible tobacco peroxidase gene expresses preferentially in the vascular system. Plant Cell Physiol, 2002, 43(1): 108-117.
34. Kaothien P, Kawaoka A, Ebinuma H, Yoshida K, Shinmyo A, A PAL-box binding factor, controls promoter activity of the horseradish wound-inducible peroxidase gene. Plant Mol Biol, 2002, 49(6): 591-599.
35. Wang S J, Lan Y C, Chen S F, Chen Y M, Yeh K W. Wound-response regulation of the sweet potato sporamin gene promoter region. Plant Mol Biol, 2002, 48(3): 223-231.
36. Qin X, Zeevaart J A. Overexpression of a 9-cis-epoxycarotenoid dioxygenase gene in Nicotiana plumbaginifolia increases abscisic acid and phaseic acid levels and enhances drought tolerance. Plant Physiol, 2002, 128(2): 544-551.
37. Shen Q, Chen C N, Brands A, Pan S M, Ho T H. The stress- and abscisic acid-induced barley gene HVA22: developmental regulation and homologues in diverse organisms. Plant Mol Biol, 2001, 45(3): 327-340.
38. Yamauchi D, Zentella R, Ho T H. Molecular analysis of the barley (Hordeum vulgare L.) gene encoding the protein kinase PKABA1 capable of suppressing gibberellin action in aleurone layers. Planta, 2002, 215(2): 319-326.
39. Chen P W, Lu C A, Yu T S, Tseng T H, Wang C S, Yu S M. Rice alpha-amylase transcriptional enhancers direct multiple mode regulation of promoters in transgenic rice. J Biol Chem, 2002, 277(16): 13641-13649.
40. Kyozuka J, Olive M, Peacock W J, Dennis E S, Shimamoto K. Promoter elements required for developmental expression of the maize Adh1 gene in transgenic rice. Plant Cell, 1994, 6(6): 799-810.
41. Granger C L, Cyr R J. Characterization of the yeast copper-inducible promoter system in Arabidopsis thaliana. Plant Cell Rep, 2001, 20(3): 227-234.
42. Michel K P, Pistorius E K, Golden S S. Unusual regulatory elements for iron deficiency induction of the idiA gene of Synechococcus elongatus PCC 7942. J Bacterio, 2001, 183 (17): 5015-5024.
43. Marrs K A, Walbot V. Expression and RNA splicing of the maize glutathione S-transferase Bronze2 gene is regulated by cadmium and other stresses. Plant Physiol, 1997, 113 (1): 93-102.
44. Bohlmann H, Vignutelli A, Hilpert B, Miersch O, Wasternack C, Apel K. Wounding and chemicals induce expression of the Arabidopsis thaliana gene Thi2. 1, encoding a fungal defense thionin, via the octadecanoid pathway. FEBS Lett, 1998, 437(3): 281-286.
45. Gatz C, Lenk I. Promoters that respond to chemical inducers. Trends in Plant Science, 1998, 3: 352-358.
46. Ayliffe M A, Roberts J K, Mitchell H J, Zhang R, Lawrence G J, Ellis J G, Pryor T J. A plant gene up-regulated at rust infection sites. Plant Physiol, 2002, 129(1): 169-180.
47. Belbahri L, Boucher C, Candresse T, Nicole M, Ricci P, Keller H. A local accumulation of the Ralstonia solanacearum PopA protein in transgenic tobacco renders a compatible plant-pathogen interaction incompatible. Plant J, 2001, 28 (4): 419-430.
48. Verap J. Local and systemic induction of two defense-related subtilisin-like protease promoters in transgenic Arabidopsis plants, Luciferin induction of PR gene expression. Plant Physiol, 2000, 124(3): 1049-1058.
49. Yu H, Yang S H, Goh C J. Spatial and temporal expression of the orchid floral homeotic gene DOMADS1 is mediated by its upstream regulatory regions. Plant Mol Biol, 2002, 49 (2): 225-237.
50. Guan X, Stege J, Kim M, Dahmani Z, Fan N, Heifetz P, Barbas C F, Briggs S P. Heritable endogenous gene regulation in plants with designed polydactyl zinc finger transcription factors. Proc Natl Acad Sci USA, 2002, 99(20): 13296-13301.
51. ZHANG Shu-Zhen, YANG Ben-Peng, LIU Fei-Hu. Cloning and sequence analysis of a flower-specific expression promoter PchsA. Journal of Agricultural Biotechnology, 2002, 10(2): 116-119.
52. Yamagata H, Yonesu K, Hirata A, Aizono Y. TGTCACA motif is a novel cis-regulatory enhancer element involved in fruit-specific expression of the cucumisin gene. J Biol Chem, 2002, 277(13): 11582-11590.
53. Buchner P, Rochat C, Wuilleme S, Boutin J P. Characterization of a tissue-specific and developmentally regulated beta-1,3-glucanase gene in pea (Pisum sativum). Plant Mol Biol, 2002, 49(2): 171-186.
54. Batchelor A K, Boutilier K, Miller S S, Hattori J, Bowman L A, Hu M, Lantin S, Johnson D A, Miki B L. SCB1, a BURP-domain protein gene, from developing soybean seed coats. Planta, 2002, 215(4): 523-532.
55. Rossak M, Smith M, Kunst L. Expression of the FAE1 gene and FAE1 promoter activity in developing seeds of Arabidopsis thaliana. Plant Mol Biol, 2001, 46(6): 717-725.
56. Diaz I, Vicente-Carbajosa J, Abraham Z, Martinez M, Isabel-La M I, Carbonero P. The GAMYB protein from barley interacts with the DOF transcription factor BPBF and activates endosperm-specific genes during seed development. Plant J, 2002, 29(4): 453-464.
57. Reidt W, Wohlfarth T, Ellerstrom M, Czihal A, Tewes A, Ezcurra I, Rask L, Baumlein H. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product. Plant J, 2000, 21(5): 401-408.
58. Buzeli R A, Cascardo J C, Rodrigues L A, Andrade M O, Almeida R S, Loureiro M E, Otoni W C, Fontes E P. Tissue-specific regulation of BiP genes: a cis-acting regulatory domain is required for BiP promoter activity in plant meristems. Plant Mol Biol, 2002, 50(4-5): 757-771.
59. Nitz I, Berkefeld H, Puzio P S, Grundler F M. Pyk10, a seedling and root specific gene and promoter from Arabidopsis thaliana. Plant Sci, 2001, 161(2): 337-346.
60. Chavez-Barcenas A T, Valdez-Alarcon J J, Martinez-Trujillo M, Chen L, Xoconostle-Cazares B, Lucas W J, Herrera-Estrella L. Tissue-specific and developmental pattern of expression of the rice sps1 gene. Plant Physiol, 2000, 124 (2): 641-654.
61. Oyama T, Okada K. The IRE gene encodes a protein kinase homologue and modulates root hair growth in Arabidopsis. Plant J, 2002, 30(3): 289-299.
62. Kunst L, Clemens S, Hooker T. Expression of the wax-specific condensing enzyme CUT1 in Arabidopsis. Biochem Soc Trans, 2000, 28(6): 651-654.
63. Lacombe E, Doorsselaere V, Boerjan W, Boudet A M, Grima-Pettenati J. Characterization of cis-elements required for vascular expression of the cinnamoyl CoA reductase gene and for protein-DNA complex formation. Plant J, 2000, 23(5): 663-676.
64. Lauvergeat V, Rech P, Jauneau A, Guez C, Coutos-Thevenot P, Grima-Pettenati J. The vascular expression pattern directed by the Eucalyptus gunnii cinnamyl alcohol dehydrogenase EgCAD2 promoter is conserved among woody and herbaceous plant species. Plant Mol Biol, 2002, 50 (3): 497-509.
65. LU Hai. Regulation of plant growth and wood quality by cambium-specific expressed genes. Ph. D. thesis, Beijing Forestry University, 2002.
66. Yang, N S, Russell D. Maize sucrose synthase-1 promoter directs phloem cell-specific expression of Gus gene in transgenic tobacco plants. Proc Natl Acad Sci, USA, 1990, 87(11): 4144-4148.
67. Noh Y S, Amasino R M. Identification of a promoter region responsible for the senescence-specific expression of SAG12. Plant Mol Biol, 1999, 41(2): 181-194.
68. McCabe M S, Garratt L C, Schepers F, Jordi W J, Stoopen G M, Davelaar E, Rhijn J H, Power J B, Davey M R. Effects of P(SAG12)-IPT gene expression on development and senescence in transgenic lettuce. Plant Physiol, 2001, 127 (2): 505-516.
69. Gan S, Amasino R M. Inhibition of leaf senescence by autoregulated production of cytokinin. Science, 1995, 270 (5244): 1986-1988.
70. Robatzek S, Somssich I E. Targets of AtWRKY6 regulation during plant senescence and pathogen defense. Genes Dev, 2002, 16(9): 1139-1149.
71. Flavell R B. Inactivation of gene expression in plants as a consequence of specific sequence duplication. Proc Natl Acad Sci USA, 1994, 91: 2490-2496.
72. Jame S K, Pietro P. A seed-specific Brassica napus oleosin promoter interacts with a G-box-specific protein and may be bi-directional. Plant Molecular Biology, 1994, 24(2): 327-340.
73. XIE Ying-Qiu, ZHU Zhen, WU Qian, XU Hong-Lin, MENG Meng, LIU Yu-Le. Isolation of a strong promoter and its functional study. Acta Botanica Sinica, 2000, 42(1): 50-54.
74. NAN Lan, LIN Hui-Xin, GUAN Yu-Cheng, CHEN Fan. Function analysis of root-specific cis-activating sequence in transgenic tobacco. Chinese Science Bulletin, 2002, 47(1): 49-53.
75. ZHENG Cheng-Chao, LIU Shi-Juan. Mas bidirectional promoter. Prog Biochem Biophys, 2001, 28(5): 727.
76. XU Yu-Quan, ZHAN Xiang-Can, Bret M. Characterization of promoters from tobacco yellow dwarf geminivirus: the activities and regulation. Chinese Journal of Virology, 1998, 14 (1): 68-74.
77. Xie M T, Gan S S, Bidirectionalization of polar promoters in plants. Nat Biotech, 2001, 19(7): 677-679.