-
1
-
-
0028287309
-
Transmission of tuberculosis in New York City. An analysis by DNA fingerprinting and conventional epidemiologic methods
-
Alland D. Kalkut G. Moss A. McAdam R. Hahn J. Bosworth W. Drucker E. Bloom B. Transmission of tuberculosis in New York City. An analysis by DNA fingerprinting and conventional epidemiologic methods New Engl. J. Med. 330 24 1994 1710-1716
-
(1994)
New Engl. J. Med.
, vol.330
, Issue.24
, pp. 1710-1716
-
-
Alland, D.1
Kalkut, G.2
Moss, A.3
McAdam, R.4
Hahn, J.5
Bosworth, W.6
Drucker, E.7
Bloom, B.8
-
2
-
-
0032812656
-
Usefulness of spoligotyping to discriminate IS6110 low-copy-number Mycobacterium tuberculosis complex strains cultured in Denmark
-
Bauer J. Andersen A. Kremer K. Miorner H. Usefulness of spoligotyping to discriminate IS6110 low-copy-number Mycobacterium tuberculosis complex strains cultured in Denmark J. Clin. Microbiol. 37 8 1999 2602-2606
-
(1999)
J. Clin. Microbiol.
, vol.37
, Issue.8
, pp. 2602-2606
-
-
Bauer, J.1
Andersen, A.2
Kremer, K.3
Miorner, H.4
-
3
-
-
0036708323
-
Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III
-
Coenye T. Spilker T. Martin A. LiPuma J.J. Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III J. Clin. Microbiol. 40 9 2002 3300-3307
-
(2002)
J. Clin. Microbiol.
, vol.40
, Issue.9
, pp. 3300-3307
-
-
Coenye, T.1
Spilker, T.2
Martin, A.3
LiPuma, J.J.4
-
4
-
-
0344838395
-
Evolutionary relationships among strains of Mycobacterium tuberculosis with few copies of IS6110
-
Dale J. Al-Ghusein H. Al-Hashmi S. Butcher P. Dickens A. Drobniewski F. Forbes K. Gillespie S. Lamprecht D. McHugh T. Pitman R. Rastogi N. Smith A. Sola C. Yesilkaya H. Evolutionary relationships among strains of Mycobacterium tuberculosis with few copies of IS6110 J. Bacteriol. 1858 2003 2555-2562
-
(2003)
J. Bacteriol.
, vol.185
, Issue.8
, pp. 2555-2562
-
-
Dale, J.1
Al-Ghusein, H.2
Al-Hashmi, S.3
Butcher, P.4
Dickens, A.5
Drobniewski, F.6
Forbes, K.7
Gillespie, S.8
Lamprecht, D.9
McHugh, T.10
Pitman, R.11
Rastogi, N.12
Smith, A.13
Sola, C.14
Yesilkaya, H.15
-
5
-
-
1542349144
-
Phylogenetic reconstruction of Mycobacterium tuberculosis within four settings of the Caribbean region: Tree comparative analyse and first appraisal on their phylogeography
-
Duchene V. Ferdinand S. Filliol I. Guegan J.F. Rastogi N. Sola C. Phylogenetic reconstruction of Mycobacterium tuberculosis within four settings of the Caribbean region: Tree comparative analyse and first appraisal on their phylogeography Infect. Genet. Evol. 4 1 2004 5-14
-
(2004)
Infect. Genet. Evol.
, vol.4
, Issue.1
, pp. 5-14
-
-
Duchene, V.1
Ferdinand, S.2
Filliol, I.3
Guegan, J.F.4
Rastogi, N.5
Sola, C.6
-
6
-
-
0015310384
-
The sampling theory of selectively neutral alleles
-
Ewens W.J. The sampling theory of selectively neutral alleles Theor Popul Biol 3 1 1972 87-112
-
(1972)
Theor. Popul. Biol.
, vol.3
, Issue.1
, pp. 87-112
-
-
Ewens, W.J.1
-
7
-
-
0028069723
-
Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: Molecular variance parsimony
-
Excoffier L. Smouse P. Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: Molecular variance parsimony Genetics 136 1 1994 343-359
-
(1994)
Genetics
, vol.136
, Issue.1
, pp. 343-359
-
-
Excoffier, L.1
Smouse, P.2
-
8
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
-
Excoffier L. Smouse P. Quattro J. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data Genetics 131 2 1992 479-491
-
(1992)
Genetics
, vol.131
, Issue.2
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.2
Quattro, J.3
-
9
-
-
1342304133
-
eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
-
Feil E.J. Li B.C. Aanensen D.M. Hanage W.P. Spratt B.G. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data J. Bacteriol. 1865 2004 1518-1530
-
(2004)
J. Bacteriol.
, vol.186
, Issue.5
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
10
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach J. Mol. Evol. 17 1981 368-376
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
11
-
-
0035876033
-
Molecular epidemiology: Focus on infection
-
Foxman B. Riley L. Molecular epidemiology: Focus on infection Am. J. Epidemiol. 153 12 2001 1135-1141
-
(2001)
Am. J. Epidemiol.
, vol.153
, Issue.12
, pp. 1135-1141
-
-
Foxman, B.1
Riley, L.2
-
12
-
-
0033558139
-
Influence of sampling on estimates of clustering and recent transmission of Mycobacterium tuberculosis derived from DNA fingerprinting techniques
-
Glynn J.R. Vynnycky E. Fine P.E. Influence of sampling on estimates of clustering and recent transmission of Mycobacterium tuberculosis derived from DNA fingerprinting techniques Am. J. Epidemiol. 149 4 1999 366-371
-
(1999)
Am. J. Epidemiol.
, vol.149
, Issue.4
, pp. 366-371
-
-
Glynn, J.R.1
Vynnycky, E.2
Fine, P.E.3
-
13
-
-
0023738045
-
Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity
-
Hunter P. Gaston M. Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity J. Clin. Microbiol. 26 11 1988 2465-2466
-
(1988)
J. Clin. Microbiol.
, vol.26
, Issue.11
, pp. 2465-2466
-
-
Hunter, P.1
Gaston, M.2
-
14
-
-
0032802792
-
Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: Interlaboratory study of discriminatory power and reproducibility
-
Kremer K. van Soolingen D. Frothingham R. Haas W.H. Hermans P.W. Martin C. Palittapongarnpim P. Plikaytis B.B. Riley L.W. Yakrus M.A. Musser J.M. van Embden J.D. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: Interlaboratory study of discriminatory power and reproducibility J. Clin. Microbiol. 37 8 1999 2607-2618
-
(1999)
J. Clin. Microbiol.
, vol.37
, Issue.8
, pp. 2607-2618
-
-
Kremer, K.1
van Soolingen, D.2
Frothingham, R.3
Haas, W.H.4
Hermans, P.W.5
Martin, C.6
Palittapongarnpim, P.7
Plikaytis, B.B.8
Riley, L.W.9
Yakrus, M.A.10
Musser, J.M.11
van Embden, J.D.12
-
15
-
-
0036236881
-
Sampling bias in the molecular epidemiology of tuberculosis
-
Murray M. Sampling bias in the molecular epidemiology of tuberculosis Emerg. Infect. Dis. 8 4 2002 363-369
-
(2002)
Emerg. Infect. Dis.
, vol.8
, Issue.4
, pp. 363-369
-
-
Murray, M.1
-
16
-
-
0032927421
-
Stability of Mycobacterium tuberculosis IS6110 restriction fragment length polymorphism patterns and spoligotypes determined by analyzing serial isolates from patients with drug-resistant tuberculosis
-
Niemann S. Richter E. Rusch-Gerdes S. Stability of Mycobacterium tuberculosis IS6110 restriction fragment length polymorphism patterns and spoligotypes determined by analyzing serial isolates from patients with drug-resistant tuberculosis J. Clin. Microbiol. 37 1999 409-412
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 409-412
-
-
Niemann, S.1
Richter, E.2
Rusch-Gerdes, S.3
-
17
-
-
0034518143
-
Use of multiple markers in population-based molecular epidemiologic studies of tuberculosis
-
Rhee J.T. Tanaka M.M. Behr M.A. Agasino C.B. Paz E.A. Hopewell P.C. Small P.M. Use of multiple markers in population-based molecular epidemiologic studies of tuberculosis Int. J. Tuberc. Lung Dis. 4 12 2000 1111-1119
-
(2000)
Int. J. Tuberc. Lung Dis.
, vol.4
, Issue.12
, pp. 1111-1119
-
-
Rhee, J.T.1
Tanaka, M.M.2
Behr, M.A.3
Agasino, C.B.4
Paz, E.A.5
Hopewell, P.C.6
Small, P.M.7
-
18
-
-
0141656318
-
Estimating change rates of genetic markers using serial samples: Applications to the transposon IS6110 in Mycobacterium tuberculosis
-
N.A. Rosenberg Tsolaki A.G. Tanaka M.M. Estimating change rates of genetic markers using serial samples: Applications to the transposon IS6110 in Mycobacterium tuberculosis Theor. Popul. Biol. 63 4 2003 347-363
-
(2003)
Theor. Popul. Biol.
, vol.63
, Issue.4
, pp. 347-363
-
-
Rosenberg, N.A.1
Tsolaki, A.G.2
Tanaka, M.M.3
-
19
-
-
0942268785
-
The transmission of tuberculosis in the light of new molecular biological approaches
-
Seidler A. Nienhaus A. Diel R. The transmission of tuberculosis in the light of new molecular biological approaches Occup. Environ. Med. 61 2 2004 96-102
-
(2004)
Occup. Environ. Med.
, vol.61
, Issue.2
, pp. 96-102
-
-
Seidler, A.1
Nienhaus, A.2
Diel, R.3
-
20
-
-
0019276739
-
Genetic diversity and structure in Escherichia coli populations
-
Selander R. Levin B. Genetic diversity and structure in Escherichia coli populations Science 210 4469 1980 545-547
-
(1980)
Science
, vol.210
, Issue.4469
, pp. 545-547
-
-
Selander, R.1
Levin, B.2
-
21
-
-
0028302048
-
The epidemiology of tuberculosis in San Francisco: A population-based study using conventional and molecular methods
-
Small P.M. Hopewell P.C. Singh S.P. Paz A. Parsonnet J. Ruston D.C. Schecter G.F. Daley C.L. Schoolnik G.K. The epidemiology of tuberculosis in San Francisco: A population-based study using conventional and molecular methods New Engl. J. Med. 330 1994 1703-1709
-
(1994)
New Engl. J. Med.
, vol.330
, pp. 1703-1709
-
-
Small, P.M.1
Hopewell, P.C.2
Singh, S.P.3
Paz, A.4
Parsonnet, J.5
Ruston, D.C.6
Schecter, G.F.7
Daley, C.L.8
Schoolnik, G.K.9
-
22
-
-
0035164782
-
Transmission dynamics and molecular characterization of Mycobacterium tuberculosis isolates with low copy numbers of IS6110
-
Soini H. Pan X. Teeter L. Musser J.M. Graviss E.A. Transmission dynamics and molecular characterization of Mycobacterium tuberculosis isolates with low copy numbers of IS6110 J. Clin. Microbiol. 39 1 2001 217-221
-
(2001)
J. Clin. Microbiol.
, vol.39
, Issue.1
, pp. 217-221
-
-
Soini, H.1
Pan, X.2
Teeter, L.3
Musser, J.M.4
Graviss, E.A.5
-
23
-
-
0035974982
-
Optimal estimation of transposition rates of insertion sequences for molecular epidemiology
-
Tanaka M.M. Rosenberg N.A. Optimal estimation of transposition rates of insertion sequences for molecular epidemiology Stat. Med. 20 16 2001 2409-2420
-
(2001)
Stat. Med.
, vol.20
, Issue.16
, pp. 2409-2420
-
-
Tanaka, M.M.1
Rosenberg, N.A.2
-
25
-
-
0029134774
-
Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: Criteria for bacterial strain typing
-
Tenover F.C. Arbeit R.D. Goering R.V. Mickelsen P.A. Murray B.E. Persing D.H. Swaminathan B. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: Criteria for bacterial strain typing J. Clin. Microbiol. 33 9 1995 2233-2239
-
(1995)
J. Clin. Microbiol.
, vol.33
, Issue.9
, pp. 2233-2239
-
-
Tenover, F.C.1
Arbeit, R.D.2
Goering, R.V.3
Mickelsen, P.A.4
Murray, B.E.5
Persing, D.H.6
Swaminathan, B.7
-
26
-
-
0036262944
-
Spread of drug-resistant Mycobacterium tuberculosis strains of the Beijing genotype in the Archangel Oblast, Russia
-
Toungoussova O.S. Sandven P. Mariandyshev A.O. Nizovtseva N.I. Bjune G. Caugant D.A. Spread of drug-resistant Mycobacterium tuberculosis strains of the Beijing genotype in the Archangel Oblast, Russia J. Clin. Microbiol. 40 6 2002 1930-1937
-
(2002)
J. Clin. Microbiol.
, vol.40
, Issue.6
, pp. 1930-1937
-
-
Toungoussova, O.S.1
Sandven, P.2
Mariandyshev, A.O.3
Nizovtseva, N.I.4
Bjune, G.5
Caugant, D.A.6
-
28
-
-
0031968881
-
Stability of Mycobacterium tuberculosis DNA genotypes
-
Yeh R.W. Ponce De Leon A. Agasino C.B. Hahn J.A. Daley C.L. Hopewell P.C. Small P.M. Stability of Mycobacterium tuberculosis DNA genotypes J. Infect. Dis. 177 4 1998 1107-1111
-
(1998)
J. Infect. Dis.
, vol.177
, Issue.4
, pp. 1107-1111
-
-
Yeh, R.W.1
Ponce De Leon, A.2
Agasino, C.B.3
Hahn, J.A.4
Daley, C.L.5
Hopewell, P.C.6
Small, P.M.7
-
29
-
-
0035942267
-
Fit genotypes and escape variants of subgroup III Neisseria meningitidis during three pandemics of epidemic meningitis
-
Zhu P. van der Ende A. Falush D. Brieske N. Morelli G. Linz B. Popovic T. Schuurman I. Adegbola R. Zurth K. Gagneux S. Platonov A. Riou J. Caugant D. Nicolas P. Achtman M. Fit genotypes and escape variants of subgroup III Neisseria meningitidis during three pandemics of epidemic meningitis Proc. Natl. Acad. Sci. USA 98 9 2001 5234-5239
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, Issue.9
, pp. 5234-5239
-
-
Zhu, P.1
van der Ende, A.2
Falush, D.3
Brieske, N.4
Morelli, G.5
Linz, B.6
Popovic, T.7
Schuurman, I.8
Adegbola, R.9
Zurth, K.10
Gagneux, S.11
Platonov, A.12
Riou, J.13
Caugant, D.14
Nicolas, P.15
Achtman, M.16
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