Phage φ29 proteins p1 and p17 are required for efficient binding of architectural protein p6 to viral DNA in vivo

Journal of Bacteriology

Volumn 186, Issue 24, 2004, Pages 8401-8406

  González Huici, Víctor ^a   Alcorlo, Martín ^a   Salas, Margarita ^a   Hermoso, José M ^a  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

GYRASE INHIBITOR; NOVOBIOCIN; PROTEIN; PROTEIN P17; VIRUS DNA; VIRUS PROTEIN; PHAGE PHI29 PROTEIN P1; PHAGE PHI29 PROTEIN P6; PHAGE PHI29, PROTEIN P17;

ANIMAL CELL; ARTICLE; BACTERIOPHAGE; DNA HELIX; DNA REPLICATION; GENOME ANALYSIS; IMMUNOPRECIPITATION; NONHUMAN; PLEIOTROPY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN DNA INTERACTION; REAL TIME POLYMERASE CHAIN REACTION; TRANSCRIPTION REGULATION; VIRUS DNA CELL DNA INTERACTION; VIRUS GENOME; BACILLUS PHAGE; BACILLUS SUBTILIS; CHROMATIN IMMUNOPRECIPITATION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MUTATION; VIROLOGY;

ANIMALIA; BACTERIA (MICROORGANISMS); DNA VIRUSES;

BACILLUS PHAGES; BACILLUS SUBTILIS; CHROMATIN IMMUNOPRECIPITATION; DNA REPLICATION; DNA, VIRAL; GENE EXPRESSION REGULATION, VIRAL; MUTATION; POLYMERASE CHAIN REACTION; VIRAL PROTEINS;

EID: 10044287239     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.186.24.8401-8406.2004     Document Type: Article

References (30)

1. Abril, A. M., M. Salas, J. M. Andreu, J. M. Hermoso, and G. Rivas. 1997. Phage φ29 protein p6 is in a monomer-dimer equilibrium that shifts to higher association states at the millimolar concentrations found in vivo. Biochemistry 36:11901-11908.
2. Azam, T. A., and A. Ishihama. 1999. Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity. J. Biol. Chem. 274:33105-33113.
3. Barthelemy, I., R. P. Mellado, and M. Salas. 1989. In vitro transcription of bacteriophage Φ29 DNA: inhibition of early promoters by the viral replication protein p6. J. Virol. 63:460-462.
4. Bravo, A., B. Illana, and M. Salas. 2000. Compartmentalization of phage φ29 DNA replication: interaction between the primer terminal protein and the membrane-associated protein p1. EMBO J. 19:5575-5584.
5. Bravo, A., and M. Salas. 1997. Initiation of bacteriophage φ29 DNA replication in vivo: assembly of a membrane-associated multiprotein complex. J. Mol. Biol. 269:102-112.
6. Bravo, A., and M. Salas. 1998. Polymerization of bacteriophage φ29 replication protein p1 into protofilament sheets. EMBO J. 17:6095-6105.
7. Camacho, A., and M. Salas. 2001. Repression of bacteriophage φ29 early promoter C2 by viral protein p6 is due to impairment of closed complex. J. Biol. Chem. 276:28927-28932.
8. Carrascosa, J. L., A. Camacho, F. Moreno, F. Jiménez, R. P. Mellado, E. Viñuela, and M. Salas. 1976. Bacillus subtilis phage φ29: characterization of gene products and functions. Eur. J. Biochem. 66:229-241.
9. Dorman, C. J., and P. Deighan. 2003. Regulation of gene expression by histone-like proteins in bacteria. Curr. Opin. Genet. Dev. 13:179-184.
10. Drlica, K., and J. Rouvière-Yaniv. 1987. Histone-like proteins of bacteria. Microbiol. Rev. 51:301-319.
11. Elías-Arnanz, M., and M. Salas. 1999. Functional interactions between a phage histone-like protein and a transcriptional factor in regulation of φ29 early-late transcriptional switch. Genes Dev. 13:2502-2513.
12. Exley, R., M. Zouine, J. J. Pernelle, C. Beloin, F. Le Hégarat, and A. M. Deneubourg. 2001. A possible role for L24 of Bacillus subtilis in nucleoid organization and segregation. Biochimie 83:269-275.
13. Freire, R., M. Salas, and J. M. Hermoso. 1994. A new protein domain for binding to DNA through the minor groove. EMBO J. 13:4353-4360.
14. González-Huici, V., M. Alcorlo, M. Salas, and J. M. Hermoso. 2004. Binding of phage φ29 architectural protein p6 to the viral genome. Evidence for topological restriction of the phage linear DNA. Nucleic Acids Res. 32:3493-3502.
15. González-Huici, V., M. Salas, and J. M. Hermoso. 2004. Genome wide, supercoiling-dependent, in vivo binding of a viral protein involved in DNA replication and transcriptional control. Nucleic Acids Res. 32:2306-2314.
16. González-Huici, V., M. Salas, and J. M. Hermoso. 2004. The push-pull mechanism of bacteriophage φ29 DNA injection. Mol. Microbiol. 52:529-540.
17. Gordon, G. S., and A. Wright. 2000. DNA segregation in bacteria. Annu. Rev. Microbiol. 54:681-708.
18. Hwang, D. S., and A. Kornberg. 1992. Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF. J. Biol. Chem. 267:23083-23086.
19. Inciarte, M. R., J. M. Lázaro, M. Salas, and E. Viñuela. 1976. Physical map of bacteriophage φ29 DNA. Virology 74:314-323.
20. Jiménez, F., A. Camacho, J. De La Torre, E. Viñuela, and M. Salas. 1977. Assembly of Bacillus subtilis phage φ29. 2. Mutants in the cistrons coding for the non-structural proteins. Eur. J. Biochem. 73:57-72.
21. Köhler, P., and M. A. Marahiel. 1997. Association of the histone-like protein HBsu with the nucleoid of Bacillus subtilis. J. Bacteriol. 179:2060-2064.
22. Moreno, F., A. Camacho, E. Viñuela, and M. Salas. 1974. Supressor-sensitive mutants and genetic map of Bacillus subtilis bacteriophage φ29. Virology 62:1-16.
23. Osburne, M. S., S. M. Zavodny, and G. A. Peterson. 1988. Drug-induced relaxation of supercoiled plasmid DNA in Bacillus subtilis and induction of the SOS response. J. Bacteriol. 170:442-445.
24. Reilly, B. E., V. M. Zeece, and D. L. Anderson. 1973. Genetic study of suppressor-sensitive mutants of the Bacillus subtilis bacteriophage φ29. J. Virol. 11:756-760.
25. Schachtele, C. F., B. E. Reilly, C. V. De Sain, M. O. Whittington, and D. L. Anderson. 1973. Selective replication of bacteriophage φ29 deoxyribonucleic acid in 6-(p-hydroxyphenylazo)-uracil-treated Bacillus subtilis. J. Virol. 11:153-155.
26. Segall, A. M., S. D. Goodman, and H. A. Nash. 1994. Architectural elements in nucleoprotein complexes: interchangeability of specific and non-specific DNA binding proteins. EMBO J. 13:4536-4548.
27. Serrano, M., J. Gutiérrez, I. Prieto, J. M. Hermoso, and M. Salas. 1989. Signals at the bacteriophage φ29 DNA replication origins required for protein p6 binding and activity. EMBO J. 8:1879-1885.
28. Serrano, M., C. Gutiérrez, M. Salas, and J. M. Hermoso. 1993. Superhelical path of the DNA in the nucleoprotein complex that activates the initiation of phage φ29 DNA replication. J. Mol. Biol. 230:248-259.
29. Tapias, A., G. López, and S. Ayora. 2000. Bacillus subtilis LrpC is a sequence-independent DNA-binding and DNA-bending protein which bridges DNA. Nucleic Acids Res. 28:552-559.
30. Whiteley, H. R., W. D. Ramey, G. B. Spiegelman, and R. D. Holder. 1986. Modulation of in vivo and in vitro transcription of bacteriophage φ29 early genes. Virology 155:392-401.