Prediction of the structural motifs of sandwich proteins

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 48, 2004, Pages 16780-16783

  Fokas, A S ^a   Gelfand, I M ^b   Kister, A E ^c  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b RUTGERS UNIVERSITY   (United States)

^c UNIVERSITY OF MEDICINE AND DENTISTRY OF NEW JERSEY   (United States)

Author keywords

Protein secondary structure; Structure prediction; Supersecondary structure

Indexed keywords

PROTEIN; SANDWICH PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BETA SHEET; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MOTIF; PROTEIN STRUCTURE;

AMINO ACID SEQUENCE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 10044239251     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0407570101     Document Type: Article

References (23)

1. Chothia, C. & Lesk, A. M. (1986) EMBO J. 5, 823-826.
2. Chothia, C. (1993) Nature 357, 543-544.
3. Thornton, J. M., Orengo, C. A., Todd, A. E., Frances, M. G. & Pearl, F. M. G. (1999) J. Mol. Biol. 293, 333-342.
4. Russell, R. B. & Barton, G. J. (1994) J. Mol. Biol. 244, 332-350.
5. Ptitsyn, O. B., Finkelstein, A. V. & Falk, P. (1979) FEBS Lett. 101, 1-5.
6. Cohen, F. E., Sternberg, M. J. E. & Taylor, W. R. (1981) J. Mol. Biol. 148, 253-272.
7. Harris, N. L., Presnell, S. R. & Cohen F. E. (1994) J. Mol. Biol. 236, 1356-1368.
8. Yue, K. & Dill, K. A. (2000) Protein Sci. 9, 1935-1946.
9. Harrison, A., Pearl, F., Mott, R., Thornton, J. & Orengo, C. (2002) J. Mol. Biol. 323, 909-926.
10. Rost, B. (2001) J. Struct. Biol. 134, 204-218.
11. Jones, D. T. (1999) J. Mol. Biol. 292, 195-202.
12. Cuff, J. A. & Barton, G. J. (2000) Proteins 40, 502-511.
13. Chandonia, J. M. & Karplus, M. (1999) Proteins 35, 293-306.
14. Richardson, J. S. (1976) Proc. Natl. Acad Sci. USA 173, 2619-2623.
15. Cohen, F. E., Sternberg, M. J. E. & Taylor, W. R. (1982) J. Mol. Biol. 156, 821-862.
16. Richardson, J. S. (1977) Nature 268, 495-500.
17. Taylor, W. R. & Green, N. M. (1989) Eur. J. Biochem. 179, 241-248.
18. Clark, D. A., Shirazi, J. & Rawlings, C. J. (1991) Protein Eng. 4, 751-760.
19. Woolfson, D. N., Evans, P. A., Hutchinson, E. G. & Thornton, J. M. (1993) Protein Eng. 6, 461-470.
20. Ruczinski, I., Kooperberg, C., Bonneau, R. & Baker, D. (2002) Proteins 48, 85-97.
21. Sternberg, M. J. E. & Thornton, J. M. (1977) J. Mol. Biol. 110, 269-283.
22. Kister, A. E., Finkelstein, A. V. & Gelfand, I. M. (2002) Proc. Natl. Acad. Sci. USA 99, 14137-14141.
23. Murzin, A. G., Brenner, S. E., Hubbard, T. & Chothia, C. (1995) J. Mol. Biol. 247, 536-540.