Strategies for selection from protein libraries composed of de novo designed secondary structure modules

Origins of Life and Evolution of the Biosphere

Volumn 34, Issue 1-2, 2004, Pages 151-157

  Matsuura, Tomoaki ^a   Plückthun, Andreas ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

Binary patterning; Combinatorial approach; Protein fold; Ribosome display

Indexed keywords

PROTEIN;

EVOLUTION; ORIGIN OF LIFE; PROTEIN;

CHEMISTRY; CONFERENCE PAPER; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE;

PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 0842345480     PISSN: 01696149     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:ORIG.0000009836.86519.eb     Document Type: Conference Paper

References (11)

1. Govindarajan, S. and Goldstein, R. A.: 1996, Why Are Some Proteins Structures So Common?, Proc. Natl. Acad. Sci. U.S.A. 93, 3341-3345.
2. Hanes, J. and Plückthun, A.: 1997, In vitro Selection and Evolution of Functional Proteins by Using Ribosome Display, Proc. Natl. Acad. Sci. U.S.A. 94, 4937-4942.
3. Helling, R., Li, H., Melin, R., Miller, J., Wingreen, N., Zeng, C. and Tang, C.: 2001, The Designability of Protein Structures, J. Mol. Graph. Model. 19, 157-167.
4. Matsuura, T., Ernst, A. and Plückthun, A.: 2002, Construction and Characterization of Protein Libraries Composed of Secondary Structure Modules, Protein Sci. 11, 2631-2643.
5. Matsuura, T. and Plückthun, A.: 2003, Selection Based on the Folding Properties of Proteins with Ribosome Display, FEBS Lett. 539, 24-28.
6. Pearl, F. M., Lee, D., Bray, J. E., Buchan, D. W., Shepherd, A. J. and Orengo, C. A.: 2002, The CATH Extended Protein-Family Database: Providing Structural Annotations for Genome Sequences, Protein Sci. 11, 233-244.
7. Thornton, J. M., Orengo, C. A., Todd, A. E. and Pearl, F. M.: 1999, Protein Folds, Functions and Evolution, J. Mol. Biol. 293, 333-342.
8. Virnekäs, B., Ge, L., Plückthun, A., Schneider, K. C., Wellnhofer, G. and Moroney, S. E.: 1994, Trinucleotide Phosphoramidites: Ideal Reagents for the Synthesis of Mixed Oligonucleotides for Random Mutagenesis, Nucleic Acids Res. 22, 5600-5607.
9. West. M. W. and Hecht, M. H.: 1995, Binary Patterning of Polar and Nonpolar Amino Acids in the Sequences and Structures of Native Proteins, Protein Sci. 4, 2032-2039.
10. Yang, F., Forrer, P., Dauter, Z., Conway, J. F., Cheng, N., Cerritelli, M. E., Steven, A. C., Plückthun, A. and Wlodawer, A.: 2000, Novel Fold and Capsid-Binding Properties of the Lambda-Phage Display Platform Protein gpD, Nat. Struct. Biol. 7, 230-237.
11. Yue, K. and Dill, K. A.: 1995, Forces of Tertiary Structural Organization in Globular Proteins, Proc. Natl. Acad. Sci. U.S.A. 92, 146-150.