Increased amplification efficiency of microchip-based PCR by dynamic surface passivation

BioTechniques

Volumn 36, Issue 2, 2004, Pages 248-252

  Lou, Xing Jian ^a   Panaro, Nicholas J ^a   Wilding, Peter ^a   Fortina, Paolo ^b   Kricka, Larry J ^a,c  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b THOMAS JEFFERSON UNIVERSITY   (United States)

^c UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COST EFFECTIVENESS; DNA; GENES; GLASS; POLYETHYLENE GLYCOLS; SILICA;

SURFACE PASSIVATION;

MICROPROCESSOR CHIPS;

GLASS; MACROGOL 8000; POVIDONE; SILICON; SILICON DIOXIDE; SILICON OXIDE; UNCLASSIFIED DRUG;

ANALYTIC METHOD; ARTICLE; BIOTECHNOLOGICAL PROCEDURES; COST EFFECTIVENESS ANALYSIS; DNA MICROARRAY; DNA TEMPLATE; DYNAMIC SURFACE PASSIVATION; GENE AMPLIFICATION; HUMAN; HUMAN CELL; LYMPHOCYTE ACTIVATION; MICROFABRICATION; POLYMERASE CHAIN REACTION; POLYMERIZATION; PROCESS OPTIMIZATION; REACTION ANALYSIS; SURFACE PROPERTY;

EID: 0842266658     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/04362st01     Document Type: Article

References (26)

1. Cheng, J. and L.J. Kricka. 2001. Biochip Technology. Harwood Academic Publishers, Philadelphia, PA.
2. Kricka, L.J. and P. Fortina. 2002. Microchips: an all-language literature survey including books and patents. Clin. Chem. 48:1620-1622.
3. Belgrader, P., W. Benett, D. Hadley, J. Richards, P. Stratton, R. Mariella, Jr., and F. Milanovich. 1999. PCR detection of bacteria in seven minutes. Science 284:449-450.
4. Burns, M.A., B.N. Johnson, S.N. Brahmasandra, K. Handique, J.R. Webster, M. Krishnan, T.S. Sammarco, P.M. Man, et al. 1998. An integrated nanoliter DNA analysis device. Science 282:484-487.
5. Wilding, P., L.J. Kricka, J. Cheng, G. Hvichia, M.A. Shoffner, and P. Fortina. 1998. Integrated cell isolation and polymerase chain reaction analysis using silicon microfilter chambers. Anal. Biochem. 257:95-100.
6. Woolley, A.T., D. Hadley, P. Landre, A.J. deMello, R.A. Mathies, and M.A. Northrup. 1996. Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device. Anal. Chem. 68:4081-4086.
7. Yuen, P.K., L.J. Kricka, P. Fortina, N.J. Panaro, T. Sakazume, and P. Wilding. 2001. Microchip module for blood sample preparation and nucleic acid amplification reactions. Genome Res. 11:405-412.
8. Giordano, B.C., J. Ferrance, S. Swedberg, A.F. Huhmer, and J.P. Landers. 2001. Polymerase chain reaction in polymeric microchips: DNA amplification in less than 240 seconds. Anal. Biochem. 291:124-132.
9. Hong, J.W., T. Fujii, M. Seki, T. Yamamoto, and I. Endo. 2001. Integration of gene amplification and capillary gel electrophoresis on a polydimethylsiloxane-glass hybrid microchip. Electrophoresis 22:328-333.
10. Martin, R.S., A.J. Gawron, and S.M. Lunte. 2000. Dual-electrode electrochemical detection for poly(dimethylsiloxane)-fabricated capillary electrophoresis microchips. Anal. Chem. 72:3196-3202.
11. Shoffner, M.A., J. Cheng, G.E. Hvichia, L.J. Kricka, and P. Wilding. 1996. Chip PCR. I. Surface passivation of microfabricated silicon-glass chips for PCR. Nucleic Acids Res. 24:375-379.
12. Anderson, R.C., X. Su, G.J. Bogdan, and J. Fenton. 2000. A miniature integrated device for automated multistep genetic assays. Nucleic Acids Res. 28:E60.
13. Giordano, B.C., E.R. Copeland, and J.P. Landers. 2001. Towards dynamic coating of glass microchip chambers for amplifying DNA via the polymerase chain reaction. Electrophoresis 22:334-340.
14. Hong, J.W., T. Fujii, M. Seki, T. Yamamoto, and I. Endo. 2000. PDMS (polydimethylsiloxane)-glass hybrid microchip for gene amplification. p. 407-410. In A. Dittmar and D. Beebe (Eds.), 1st Annual International IEEE-EMBS Special Topic Conference on Microtechnologies in Medicine and Biology. Proceedings. IEEE. Piscataway, NJ.
15. Khandurina, J., T.E. McKnight, S.C. Jacobson, L.C. Waters, R.S. Foote, and J.M. Ramsey. 2000. Integrated system for rapid PCR-based DNA analysis in microfluidic devices. Anal. Chem. 72:2995-3000.
16. Lagally, E.T., I. Medintz, and R.A. Mathies. 2001. Single-molecule DNA amplification and analysis in an integrated microfluidic device. Anal. Chem. 73:565-570.
17. Northrup, M.A., B. Benett, D. Hadley, P. Landre, S. Lehew, J. Richards, and P. Stratton. 1998. A miniature analytical instrument for nucleic acids based on micromachined silicon reaction chambers. Anal. Chem. 70:918-922.
18. Poser, S., T. Schulz, U. Dillner, V. Baier, J.M. Kohler, D. Schimkat, G. Mayer, and A. Siebert. 1997. Chips elements for fast thermocycling. Sens. Actuators A 62:672-675.
19. Taylor, T.B., E.S. Winn-Deen, E. Picozza, T.M. Woudenberg, and M. Albin. 1997. Optimization of the performance of the polymerase chain reaction in silicon-based microstructures. Nucleic Acids Res. 25:3164-3168.
20. Nagai, H., Y. Murakami, Y. Morita, K. Yokoyama, and E. Tamiya. 2001. Development of a microchamber array for picoliter PCR. Anal. Chem. 73:1043-1047.
21. Trau, D., T.M. Lee, A.I. Lao, R. Lenigk, I.M. Hsing, N.Y. Ip, M.C. Caries, and N.J. Sucher. 2002. Genotyping on a complementary metal oxide semiconductor silicon polymerase chain reaction chip with integrated DNA microarray. Anal. Chem. 74:3168-3173.
22. Lee, T.M., I.M. Hsing, A.I. Lao, and M.C. Carles. 2000. A miniaturized DNA amplifier: its application in traditional Chinese medicine. Anal. Chem. 72:4242-4247.
23. Cheng, J., M.A. Shoffner, G.E. Hvichia, L.J. Kricka, and P. Wilding. 1996. Chip PCR. II. Investigation of different PCR amplification systems in microfabricated silicon-glass chips. Nucleic Acids Res. 24:380-385.
24. Panaro, N.J., P.K. Yuen, T. Sakazume, P. Fortina, L.J. Kricka, and P. Wilding. 2000. Evaluation of DNA fragment sizing and quantification by the Agilent 2100 Bioanalyzer. Clin. Chem. 46:1851-1853.
25. Kingshott, P., S. McArthur, H. Thissen, D.G. Castner, and H.J. Griesser. 2002. Ultrasensitive probing of the protein resistance of PEG surfaces by secondary ion mass spectrometry. Biomaterials 23:4775-4785.
26. Lee, J.H., H.B. Lee, and J.D. Andrade. 1995. Blood compatibility of polyethylene oxide surfaces. Prog. Polym. Sci. 20:1043-1079.