Analysis of the peptides (Prp106 - 126, MSI-78A, and oxaldie 1) with the same biological activity by discrete fourier transform: Toward a selection rule in ligand-receptor interaction

Chemical and Pharmaceutical Bulletin

Volumn 51, Issue 5, 2003, Pages 550-559

  Numao, Naganori ^a   Fujii, Hisashi ^b   Fukazawa, Yoshiyuki ^b   Yoshioka, Ken ^b   Okada, Mayumi ^a   Tanaka, Kazuyoshi ^c  

^a BioFrontier Institute Inc   (Japan)

^b KANAGAWA ACADEMY OF SCIENCE AND TECHNOLOGY   (Japan)

^c KYOTO UNIVERSITY   (Japan)

Author keywords

Binary; Bioinformatic; Discrete fourier transform; Electronegativity; Hardness; Prion

Indexed keywords

1 EIDLAXO; A 87 ISM; LYSYLTHREONYLASPARAGINYLMETHIONYLLYSYLHISTIDYLMETHIONYLALANYLGLYCYLALANYL ALANYLALANYLALANYLGLYCYLALANYLVALYLVALYLGLYCYLGLYCYLLEUCYLGLYCINAMIDE CARBOXYLIC ACID; MSI 78A; OXALDIE 1; PEPTIDE DERIVATIVE; PRION PROTEIN; PRION PROTEIN[106-126]; UNCLASSIFIED DRUG; AMINO ACID; ANTIMICROBIAL CATIONIC PEPTIDE; DRUG RECEPTOR; LIGAND; MESSENGER RNA; NUCLEIC ACID; PEPTIDE; PEPTIDE FRAGMENT; PEXIGANAN; PRION PROTEIN (106 126); PRION PROTEIN (106-126);

AMINO ACID SEQUENCE; ARTICLE; BIOLOGICAL ACTIVITY; ELECTRON; FREQUENCY ANALYSIS; INFRARED SPECTROSCOPY; PARAMETER; PHYSICAL CHEMISTRY; PROTEIN INTERACTION; RATING SCALE; RNA SEQUENCE; ALGORITHM; CHEMISTRY; DRUG DESIGN; DRUG EFFECT; FOURIER ANALYSIS; MOLECULAR GENETICS; PRION; STRUCTURE ACTIVITY RELATION;

ALGORITHMS; AMINO ACID SEQUENCE; AMINO ACIDS; ANTIMICROBIAL CATIONIC PEPTIDES; DRUG DESIGN; FOURIER ANALYSIS; LIGANDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACIDS; PEPTIDE FRAGMENTS; PEPTIDES; PRIONS; RECEPTORS, DRUG; RNA, MESSENGER; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 0642309876     PISSN: 00092363     EISSN: 13475223     Source Type: Journal    
DOI: 10.1248/cpb.51.550     Document Type: Article

References (46)

1. Numao N., Noguchi N., Eguchi Y., Watanabe S., Fukui T., Kamino T., Shimozono N., Yamazaki A., Kobayashi S., Sasatsu M., Biol. Pharm. Bull., 26, 229-232 (2003).
2. Numao N., Hirota Y., Iwahori A., Kidokoro S., Sasatsu M., Kondo I., Itoh S., Itoh E., Katoh T., Shimozono N., Yamazaki A., Takao K., Kobayashi S., Biol. Pharm. Bull., 22, 73-76 (1999).
3. Forioni G., Angeretti N., Chiesa R., Monzani E., Salmona M., Bugiani O., Tagliavini F., Nature (London), 362, 543-546 (1993).
4. Zahn R., Liu A., Luhrs T., Riek R., von Schroetter C., Garcia F. L., Billeter M., Calzolai L., Wider G., Wuthrich K., Proc. Natl. Acad. Sci. U.S.A., 97, 145-150 (2000).
5. Huang Z., Gabriel J.-M., Baldwin M. A., Fletterick R. J., Prusiner S. B., Cohen F. E., Proc. Natl. Acad. Sci. U.S.A., 91, 7139-7143 (1994).
6. Iwahori A., Hirota Y., Sampe R., Miyano S., Numao N., Biol. Pharm. Bull., 20, 267-270 (1997).
7. Zasloff M., Proc. Natl. Acad. Sci. U.S.A., 84, 5449-5453 (1987).
8. Johnsson K., Allemann R. K., Widmer H., Benner S. A., Nature (London), 365, 530-532 (1993).
9. Veljkovic V., Cosic I., Dimitrijevic B., Lalovic D., IEEE Trans. Biomed. Eng., BME-32, 337-341 (1985).
10. Cosic I., IEEE Trans. Biomed. Eng., 41, 1101-1114 (1993).
11. Eisenberg D., Weiss R. M., Terwilliger T. C., Faraday Symp. Chem. Ser., 17, 109-120 (1982).
12. Tiwari S., Ramachandran S. Bhattacharya A., Bhattacharya S., Ramaswarmy R., CABIOS, 13, 263-270 (1997).
13. Kutuzova G. I., Frank G. K., Epipova N. G., Makeev V. Yu., Polozov R.V., Biophysics, 44, 218-225 (1999).
14. Fukui K., "Proceedings of the 5th Institute for Fundamental Chemistry Symposium," May 26, 1989 in Japanese.
15. Lacey J. C., Mullins D. W., Orig. Life, 13, 3-42 (1983).
16. Lacey J. C., Chemtracts-Biochem. Mol. Bio., 12, 398-418 (1999) and references therein.
17. Hobish M. K., Wickramasinghe N. S. M. D., Ponnamperuma C., Adv. Space Res., 15, 365-382 (1995).
18. Shimizu M., J. Phys. Soc. Jpn., 56, 43-35 (1987).
19. Gilbert W., Nature (London), 319, 618 (1986) and references therein.
20. Guerrier-Takada C., Gardiner K., Marsh T., Pace N., Altman S., Cell, 35, 849-857 (1983).
21. Kruger K., Grabowski P. J., Zaug A. J., Sands J., Gottschiling D. E., Cech T. R., Cell, 31, 147-157 (1982).
22. Yarus M., Curr. Opin. Chem. Biol., 3, 260-267 (1999) and references therein.
23. Numao N., Kidokoro S., Biol. Pharm. Bull., 16, 1160-1163 (1993).
24. Rabiner L., Gold B., "Theory and Application on Digital Signal Processing," Prentice-Hall, Englewood Cliffs, NJ, 1975, pp. 50-59.
25. Cosic I., Nesic D., Eur. J. Biochem., 170, 247-252 (1987).
26. Kretzschmar H. A., Stowring L. E., Westaway D., Stubblebine W. H., Prusiner S. B., Dearmond S. J., DNA, 5, 315-324 (1986).
27. Craig R. K., Riley J. H., Edbrooke M. R., Broad P. M., Foord S. M., Al-Kazwini S. J., Holman J. J., Marshall I. I., Biochem. Soc. Symp., 52, 91-105 (1986).
28. Poschl E., Lindley I., Hofer E., Seifert J. M., Brunowsky W., Besemer J., FEBS Lett., 226, 96-100 (1987).
29. Green F. R., Lynch B., Kaiser E. T., Proc. Natl. Acad. Sci. U.S.A., 84, 8340-8344 (1987).
30. Inoue A., Shikano M., Komatsu Y., Obata J., Ochiai J., Nishide H., Ito N., Nagao H., Kondo K., Tunemoto D., Hemmi H., Numao N., Eur. J. Biochem., 201, 607-614 (1991).
31. Veljkovic V., Lalovic D. I., Experientia, 33, 1228-1229 (1977).
32. Veljkovic V., Slavic I., Phys. Rev. Lett., 29, 105-107 (1972).
33. Herrmann E. Ch., Experientia, 35, 1263-1264 (1979).
34. Rosenblatt D. H., Dacre J. C., Experientia, 35, 567-568 (1979).
35. Barness W. S., Levin D. E., Experientia, 35, 565-567 (1979).
36. Fukazawa Y., Fujii H., Yoshioka K., unpublished results.
37. Allen L. C., J. Am. Chem. Soc., 111, 9003-9014 (1989).
38. Pearson R., Inorg. Chem., 27, 734-740 (1988).
39. Sanderson R. T., Science, 114, 670-672 (1951).
40. Datta D., J. Phys. Chem., 90, 4216-4217 (1986).
41. Yang W., Lee C., Ghosh S. K., J. Phys. Chem., 89, 5412-5414 (1985).
42. Tanaka K., Tsu R., Phys. Rev., B24, 2038-2050 (1981).
43. Parr R. G., Pearson R. G., J. Am. Chem. Soc., 105, 7512-7516 (1983).
44. Stewart J. J. P., J. Comp. Chem., 10, 209-220 (1989).
45. Stewart J. J. P., J. Comp. Chem., 10, 221-264 (1989).
46. MOPAC2000 ver.1.3, Fujitsu Ltd., Tokyo, Japan, 2000.