Erratum: Thermococcus atlanticus sp. nov., a hyperthermophilic Archaeon isolated from a deep-sea hydrothermal vent in the Mid-Atlantic Ridge (Extremophiles (2003) 7 (101-109) DOI: 10.1007/s00792-002-0301-8);Extremophiles, Thermophily section, species description Thermococcus atlanticus sp. nov., a hyperthermophilic Archaeon isolated from a deep-sea hydrothermal vent in the Mid-Atlantic Ridge

Extremophiles

Volumn 7, Issue 2, 2003, Pages 101-109

  Cambon Bonavita, Marie Anne ^a   Lesongeur, Françoise ^a   Pignet, Patricia ^a   Wery, Nathalie ^a   Lambert, Christophe ^b   Godfroy, Anne ^a   Querellou, Joël ^a   Barbier, Georges ^a  

^a IFREMER   (France)

^b INSTITUT UNIVERSITAIRE EUROPÉEN DE LA MER   (France)

Author keywords

Hydrothermal; Mid Atlantic Ridge; Proteolysis; Thermococcus; Thermophiles

Indexed keywords

ARCHAEA; THERMOCOCCUS; THERMOCOCCUS ATLANTICUS;

ARCHAEAL DNA; ARCHAEAL RNA; RIBOSOME DNA; RNA 16S; SEA WATER;

ARTICLE; ATLANTIC OCEAN; CHEMISTRY; CLASSIFICATION; COMPARATIVE STUDY; DNA BASE COMPOSITION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; SCANNING ELECTRON MICROSCOPY; SPECIES DIFFERENCE; TEMPERATURE; THERMOCOCCUS;

ATLANTIC OCEAN; BASE COMPOSITION; DNA, ARCHAEAL; DNA, RIBOSOMAL; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, ARCHAEAL; RNA, RIBOSOMAL, 16S; SEAWATER; SPECIES SPECIFICITY; TEMPERATURE; THERMOCOCCUS;

EID: 0642276666     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-003-0343-6     Document Type: Erratum

References (48)

1. Adams MWW, Holden JF, Menon AL, Schut GJ, Grunden AM, Hou C, Hutchins AM, Jenney FE, Kim C, Ma KS, Pan GL, Roy R, Sapra R, Story SV, Verhagen MFJM. (2001) Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus. J Bacteriol 183:716-724
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
3. Antoine E, Guezennec J, Meunier J, Lesongeur F, Barbier G (1995) Isolation and characterization of extremely thermophilic archaebacteria ralated to the genus Thermococcus from deep sea hydrothermal Guaymas basin. Curr Microbiol 31:186-192
4. Arab H, Volker H, Thomm M (2000) Thermococcus aegaeicus sp nov and Staphylothermus hellenicus sp nov., two novel hyperthermophilic archaea isolated from geothermally heated vents off Palaeochori Bay, Milos, Greece. Int J Syst Evol Microbiol 50:2101-2108
5. Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: Reevaluation of unique biological group. Microbiol Rev 43:260-296
6. Belkin S, Jannasch HW (1985) A new extremely thermophilic, sulfur-reducing heterotrophic marine bacterium. Arch Microbiol 141:181-186
7. Blumentals II, Itoh M, Olson GJ, Kelly RM (1990) Role of polysulfides in reduction of elemental sulfur by the hyperthermophilic archaebacterium Pyrococcus furiosus. Appl Environ Microbiol 56:1255-1262
8. Cambon-Bonavita MA, Schmitt P, Zieger M, Flaman JM, Lesongeur F, Raguénès G, Bindel D, Frisch N, Lakkis Z, Dupret D, Barbier G, Quérellou J (2000) Cloning, expression, and characterization of DNA polymerase I from the hyperthermophilic archaea Thermococcus fumicolans. Extremophiles 4:215-225
9. Canganella F, Jones WJ, Gambacorta A, Antranikian G (1998) Thermococcus guaymasensis sp. nov. and Thermococcus aggregans sp. nov., two novel thermophilic archaea isolated from the Guaymas Basin hydrothermal vent site. Int J Syst Bacteriol 48:1181-1185
10. Charbonnier F, Erauso G, Barbeyron T, Prieur D, Forterre P (1992) Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures. J Bacteriol 6103-6109
11. Ciaramella M, Cannio R, Moracci M, Pisani FM, Rossi M (1995) Molecular biology of extremophiles. World J Microbiol Biotechnol 11:71-84
12. Dirmeier R, Keller M, Hafenbradl D, Braun FJ, Rachel R, Burggraf S, Stetter KO (1998) Thermococcus acidaminovorans sp. nov., a new hyperthermophilic alkalophilic archaeon growing on amino acids. Extremophiles 2:109-114
13. Duffaud GD, dHennezel OB, Peek AS, Reysenbach AL, Kelly RM (1998) Isolation and characterization of Thermococcus barossii, sp. nov., a hyperthermophilic Archaeon isolated from a hydrothermal vent flange formation. Syst Appl Microbiol 21:40-49
14. Erauso G, Prieur D, Godfroy A, Raguénès G (1995) Plate cultivation techniques for strictly anaerobic, thermophilic, sulfur-metabolizing archae. In: Robb FT, Place AR (eds) Archaea: a laboratory manual. Thermophiles. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp 25-29
15. Felsentein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
16. Felsentein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 30:783-791
17. Fiala G, Stetter KO (1986) Pyrococus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100°C. Arch Microbiol 145:56-61
18. Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignement and molecular phylogeny. CABIOS 12:543-548
19. Godfroy A, Meunier JR, Guézennec J, Lesongeur F, Raguénès G, Rimbault A, Barbier G (1996) Thermococcus fumicolans sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent in the North Fiji Basin. Int J Syst Bacteriol 46:1113-1119
20. Godfroy A, Lesongeur F, Raguénès G, Quérellou J, Antoine E, Meunier JR, Guézennec J, Barbier G (1997) Thermococcus hydrothermalis sp. nov, a new hyperthermophilic Archaeon isolated from a deep-sea hydrothermal vent. Int J Syst Bacteriol 47:622-626
21. Gonzalez JM, Kato C, Horikoshi K (1995) Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deap-sea hydrothermal vents. Arch Microbiol 164:159-164
22. Huber R, Stöhr J, Hohenhaus S, Rachel R, Burggraf S, Jannash HW, Stetter KO (1995) Thermococcus chitinophagus sp. nov., a novel, chitin-degrading, hyperthermophilic archaeum from a deep-sea hydrothermal vent environment. Arch Microbiol 164:255-264
23. Juniper SK, Cambon MA, Lesongeur F, Barbier G (2001) Extraction and purification of DNA from organic rich subsurface sediments (ODP Leg 169S). Mar Geotechnol 174:241-247
24. Kobayashi T, Kwak YS, Akiba T, Kudo T, Horikoshi K (1994) Thermococcus profondus sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Syst Appl Microbiol 17:232-236
25. Lake JA (1987) A rate- independent technique for analysis of nucleic acid sequences: evolutionary parsimony. Mol Biol Evol 4:167-191
26. Marmur J, Doty P (1962) Determination of the base composition of desoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109-118
27. Marteinsson VT, Watrin L, Prieur D, Caprais JC, Raguenes G, Erauso G (1995) Phenotypic characterization, DNA similarities, and protein profiles of twenty sulfur-metabolizing hyperthermophilic anaerobic archaea isolated from hydrothermal vents in the southwestern Pacific Ocean. Int J Syst Bacteriol 45:623-632
28. Marteinsson VT, Birrien JL, Reysenbach AL, Vernet M, Marie D, Gambacorta A, Messner P, Sleytr UB, Prieur D (1999) Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int J Syst Bacteriol 49:351-359
29. Meunier JR (1994) Biodiversité et systématique des populations de microorganismes thermophiles isolés d'é cosystèmes hydrothermaux océaniques abyssaux: Paris 7
30. Miroshnichenko ML, Bonch-Osmolovskaya EA, Neuner A, Kostrikina NA, Chernych NA, Alekseev VA (1989) Thermococcus stetteri sp. nov., a new extremely thermophilic marine sulfur-metabolizing archaebacterium. Syst Appl Microbiol 12:257-262
31. Miroshnichenko ML, Gongadze GM, Rainey FA., Kostyukova AS, Lysenko AM, Chernyh NA, BonchOsmolovskaya EA (1998) Thermococcus gorgonarius sp. nov. and Thermococcus pacificus sp. nov.: heterotrophic extremely thermophilic archaea from New Zealand submarine hot vents. Int J Syst Bacteriol 48:23-29
32. Miroshnichenko ML, Hippe H, Stackebrandt E, Kostrikina NA, Chernych NA, Jeanthon C, Nazina TN, Belyaev SS, Bonch-Osmolovskaya EA (2001) Isolation and characterization of Thermococcus sibiricus sp. nov. from a Western Siberia high-temperature oil reservoir. Extremophiles 5:85-91
33. Moensch TT, Zeikus JG (1983). An improved preparation method for a titanium(III) media reductant. J Microbiol Methods 1:199-202
34. Neuner A, Jannasch HW, Belkin S, Stetter KO (1990). Thermococcus litoralis sp. nov.: A new species of extremely thermophilic marine archaebacterium. Arch Microbiol 153:205-207
35. Noll KM, Vargas M (1997) Recent advances in genetic analyses of hyperthermophilic Archaea and Bacteria. Arch Microbiol 168:73-80
36. Perler F, Kumar S, Kong H (1996) Thermostable DNA polymerases. In: Adams MWW (ed) Enzymes and proteins from hyperthermophilic microorganisms. Academic Press, San Diego, pp 377-435
37. Raguénès G, Christen R, Guezennec J, Pignet P, Barbier G (1997) Vibrio diabolicus, sp. nov. a new polysaccharide-secreting organisms isolated from a deep-sea hydrothermal vent polychate annelid, Alvinella pompejana. Int J Syst Bacteriol 47:989-995
38. Ronimus RS, Reysenbach AL, Musgrave DR, Morgan HW (1997) The phylogenetic position of the Thermococcus isolate AN1 based on 16S rRNA gene sequence analysis: a proposal that AN1 represents a new species, Thermococcus zilligii sp. nov. Arch Microbiol 168:245-248
39. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
40. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74:5467-5473
41. Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849
42. Takagi M, Nishioka M, Kakihara H, Kitabayashi M, Inoue H, Kawakami B, Oka M, Imanaka T (1997) Characterization of DNA polymerase from Pyrococcus sp. Strain KOD1 ant its application to PCR. Appl Environ Microbiol 63:4504-4510
43. Takai K, Sako Y (1999) A molecular view of archaeal diversity in marine and terrestrial hot water environments. FEMS Microbiol Ecol 28:177-188
44. Takai K, Sugai A, Itoh T, Horikoshi K (2000) Palaeococcus ferrophilus gen. nov., sp nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 50:489-500
45. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
46. Wery N, Moricet J-M, Pignet P, Lesongeur F, Cambon-Bonavita MA, Barbier G. (2001) Caloranaerobacter azorensis, gen. nov., sp. nov., an anaerobic thermophilic bacterium, isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 51:1789-1796
47. Willingham K, Maher MJ, Grunden AM, Ghosh M, Adams MWW, Freeman HC, Guss JM (2001) Crystallization and characterization of the prolidase from Pyrococcus furiosus. Acta Crystallogr D 47:428-430
48. Zillig W, Janekovic D, Schafer W, Reiter WD (1983) The archaebacterium Thermococcus celer represents, a novel genus within the thermophilic branch of the archaebacteria. Syst Appl Microbiol 4:88-94