Determination of Genetic Differences between Fluid and Nonfluid Variants of Clavibacter michiganensis subsp. sepedonicus Using rep-PCR Technique

Folia Microbiologica

Volumn 48, Issue 5, 2003, Pages 682-686

  Fousek, J ^a,b   Mraz I ^a  

^a INSTITUTE OF PLANT MOLECULAR BIOLOGY   (Czech Republic)

^b UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); CLAVIBACTER MICHIGANENSIS; CLAVIBACTER MICHIGANENSIS SUBSP. SEPEDONICUS; PROKARYOTA; UNCULTURED ACTINOMYCETE;

EID: 0348197120     PISSN: 00155632     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02993479     Document Type: Article

References (35)

1. BECK VON BODMAN S., FARRAND S.K.: Capsular polysaccharide biosynthesis and pathogenicity in Erwinia stewartii require induction by an N-acylhomoserine lactone autoinducer. J. Bacteriol. 177, 5000-5008 (1995).
2. BISHOP A.L., SLACK S.A.: Effect of cultivar, inoculum dose and strain Clavibacter michiganensis subsp. sepedonicus on symptom development in potatoes. Phytopathology 77, 1085-1089 (1987).
3. BISHOP A.L., CLARKE R.G., SLACK S.A.: Antigenic anomaly in a naturally occurring nonfluidal strain of Corynebacterium sepedonicum. Am. Potato J. 65, 237-246 (1988).
4. BROWN S., REILLEY A.A., KNUDSON D.L., ISHIMARU C.A.: Genomic fingerprinting of virulent and avirulent strains of Clavibacter michiganensis subsp. sepedonicus. Curr. Microbiol. 44, 112-119 (2002).
5. DAVIS M.J., GILLESPIE A.G. Jr., VIDAVER A.K., HARRIS R.W.: Clavibacter, a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli and Clavibacter xyli subsp. cynodontis, pathogens that cause ratoon stunting disease of sugarcane and Bermudagrass stunting disease. Internat. J. Syst. Bacteriol. 34, 107-117 (1984).
6. DE BOER S.H., MCCANN M.: Detection of Corynebacterium sepedonicum in potato cultivars with different propensities to express ring rot symptoms. Am. Potato J. 67, 685-694 (1990).
7. FOUSEK J., MRÁZ I., PETRZIK K.: Comparison of genetic variability between Czech and foreign isolates of phytopathogenic bacteria Clavibacter michiganensis subsp. sepedonicus by rep-PCR technique. Folia Microbiol. 47, 450-454 (2002).
8. FREY P., SMITH J.J., ALBAR L., PRIOR P., SADDLER G.S., TRIGALET-DEMERY D., TRIGALET A.: Bacteriocin typing of Burkholderia (Pseudomonas) solanacearum race 1 of the French West Indies and correlation with genomic variation of the pathogen. Appl. Environ. Microbiol. 62, 473-479 (1996).
9. HENNINGSON P.J., GUDMESTAD N.C.: Fatty acid analysis of phytopathogenic coryneform bacteria. J. Gen. Microbiol. 137, 427-442 (1991).
10. HENNINGSON P.J., GUDMESTAD N.C.: Comparison of exopolysaccharides from mucoid and nonmucoid strains of Clavibacter michiganensis subsp. sepedonicus. Can. J. Microbiol. 39, 291-296 (1992).
11. HOCKER W.J.: Compendium of Potato Diseases. APS, St. Paul, MN (USA) 1981.
12. KOKOŠKOVÁ B., KÜDELA V.: Induction of nonmucoid variant of Clavibacter michiganensis subsp. sepedonicus and comparison their immunochemical and biochemical characteristics. J. Plant Dis. Protect. 109, 630-638 (2002).
13. LAINE M.J., HAAPALAINEN M., WAHLLOOS T., KANKARE K., NISSINEN R., KASSUWI S., METZLER M.C.: The cellulase encoded by the native plasmid of Clavibacter michiganensis subsp. sepedonicus plays a role in virulence and contains an expansin-like domain. Physiol. Mol. Plant Pathol. 57, 221-233 (2000).
14. LELLIOT R.A., SELLAR P.W.: The detection of latent ring rot (Corynebacterium sepedonicum (SPIEK et KOTTH.) SKAPT et BURKH) in potato stocks. EPPO Bull. 6, 101-106 (1976).
15. LOUWS F.J., FULBRIGHT D.W., STEPHENS C.T., DE BRUIJN F.J.: Differentiation of genomic structure by rep-PCR fingerprinting to rapidly classify Xanthomonas campestris pv. vesicatoria. Phytopathology 85, 528-536 (1995).
16. LOUWS F.J., BELL J., MEDINA-MORA C.M., SMART C.D., OPGENORTH D., ISHIMARU C.A., HAUSBECK M.K., DE BRUIJN F.J., FULBRIGHT D.W.: rep-PCR-mediated genomic fingerprinting: a rapid and effective method to identify Clavibacter michiganensis. Phytopathology 88, 862-868 (1998).
17. LUPSKI J.R., WEINSTOCK G.M.: Short, interspersed repetitive DNA sequences in prokaryotic genomes. J. Bacteriol. 174, 4525-4529 (1992).
18. MARTÍN M., LORETO J., SANCHEZ-CONTRERAS M., BONILLA I., REVILE R.: Muck is necessary for galactoglucan production in Sinorhizobium meliloti EFB1. Molec. Plant Microbe Interact. 13, 129-135 (2000).
19. MC MANNUS P.S., JONES A.L.: Genetic fingerprinting of Erwinia amylovora strains isolated tree-fruit crops and Rubus spp. Phytopathology 85, 1547-1553 (1995).
20. MILLS D., RUSELL B.W., HANUS J.W.: Specific detection of Clavibacter michiganensis subsp. sepedonicus by amplification of three unique DNA sequences isolated by subtraction hybridization. Phytopathology 87, 853-861 (1997).
21. MOGEN B.D., OLSON H.R., SPARKS R.B., GUDMESTAD N.C., OLESON A.E.: Genetic variation in strains of Clavibacter michiganense subsp. sepedonicum: polymorphism in restriction fragments containing a highly repeated sequence. Phytopathology 80, 90-96 (1990).
22. NISSINEN R., LAI F.M., LAINE M.J., BAUER P., REILLEY A.A., LI X., DE BOER S.H., ISHIMARU C.A., METZLER M.C.: Clavibacter michiganensis subsp. sepedonicus elicits the hypersensitive response in tobacco and secrets hypersensitive response-inducing protein(s). Phytopathology 87, 678-684 (1997).
23. OLSSON K.: Experience of ring rot caused by Corynebacterium sepedonicum (SPIECK. et KOTTH.) SKAPT et BURKH. in Sweden. Particulary detection of the disease in its latent form. EPPO Bull. 6, 209-219 (1976).
24. PALOMO J.L., VELASQUEZ E., MATEOS P.F., GARCIA-BENAVIDES P., MARTINEZ-MOLINA E.: Rapid identification of Clavibacter michiganensis subsp. sepedonicus based on the stable low molecular weight RNA (LMW RNA) profiles. Europ. J. Plant Pathol. 106, 789-793 (2000).
25. PASTRIK K.-H.: Detection of Clavibacter michiganensis subsp. sepedonicus in potato tubers by multiplex PCR with coamplification of host DNA. Europ. J. Plant Pathol. 106, 155-165 (2000).
26. RADEMARKER J.L.W., DE BRUJIN F.J.: Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis, pp. 1-20 in DNA Markers: Protocols, Applications and Overviews (G. Gaetano-Anolles, P.M. Gresshoff, Eds). J. Wiley & Sons, New York 1997.
27. ROTHWELL A.: Bacterial canker of tomato caused by Corynebacterium michiganense (SMITH) JENSEN. Rhod. Agric. J. 1871, 75-78 (1968).
28. SCHULD B.A., CRANE J., HARRISON M.D.: Symptomless infection with Clavibacter michiganensis subsp. sepedonicus during tissue culture propagation potato. Can. J. Plant Sci. 72, 943-953 (1992).
29. SMITH N.C., HENNESEY J., STEAD D.E.: Repetitive sequence-derived PCR profiling using the BOX-AIR primer for rapid identification of the plant pathogen Clavibacter michiganensis subspecies sepedonicus. Eur. J. Plant Pathol. 107, 739-748 (2001).
30. SPIECKERMANN A., KOTTHOFF P.: Untersuchungen über die Kartoffelpflanze und ihre Krankheiten. Die Bakterienringfäule der Kartoffelpflanze. Landwirtschft. Jahrsb. 46, 659-728 (1914).
31. VAN ALFEN N.K., MCMILLAN B.D., TURNER V., HESS W.M.: Role of pit membranes in macromolecule-induced wilt of plants. Plant Physiol. 73, 1020-1023 (1983).
32. VERSALOVIC J., SCHNEIDER M., LUPSKI J.R.: Genomic fingerprinting of bacteria using repetitive sequence based PCR (rep-PCR). Meth. Cell. Mol. Biol. 5, 25-40 (1994).
33. VIDAVER A.K.: Synthetic and complex media for the rapid detection of fluorescence of phytopathogenic Pseudomonas: effect of the carbon source. Appl. Microbiol. 15, 1523-1524 (1967).
34. WESTRA A.A.G., SLACK S.A.: Isolation and characterization of extracelullar polysaccharide of Clavibacter michiganensis subsp. sepedonicus. Phytopathology 82, 1193-1199 (1992).
35. WESTRA A.A.G., SLACK S.A.: Effect of interaction of inoculum dose, cultivar and geographic location on the magnitude of bacterial ring rot symptom expression in potato. Phytopathology 84, 228-235 (1994).