Transporter's evolution and carbohydrate metabolic clusters

Trends in Microbiology

Volumn 12, Issue 1, 2004, Pages 4-7

  Plantinga, Titia H ^a   Van Der Does, Chris ^a,b   Driessen, Arnold J M ^a  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

^b GOETHE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CARRIER PROTEIN;

AMINO ACID SEQUENCE; BACTERIAL GENE; BACTERIAL GENOME; CARBOHYDRATE METABOLISM; ENZYME SUBSTRATE; ESCHERICHIA COLI; GENE CLUSTER; GENE LOCUS; GENETIC CODE; GENOME ANALYSIS; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN METABOLISM; PROTEIN PHOSPHORYLATION; REVIEW; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TRANSPORT KINETICS;

BACTERIA (MICROORGANISMS); ESCHERICHIA; ESCHERICHIA COLI K12;

EID: 0347360207     PISSN: 0966842X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tim.2003.11.001     Document Type: Short Survey

References (18)

1. Sánchez J.C., et al. Activation of a cryptic gene encoding a kinase for L-xylulose opens a new pathway for the utilization of L-lyxose by Escherichia coli. J. Biol. Chem. 269:1994;29665-29669.
2. Badía J., et al. A rare 920-kilobase chromosomal inversion mediated by IS1 transposition causes constitutive expression of the yiaK-S operon for carbohydrate utilization in Escherichia coli. J. Biol. Chem. 273:1998;8376-8381.
3. Ibáñez E., et al. Regulation of expression of the yiaKLMNOPQRS operon for carbohydrate utilization in Escherichia coli: involvement of the main transcriptional factors. J. Bacteriol. 182:2000;4617-4624.
4. Ibáñez E., et al. Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose. J. Bacteriol. 182:2000;4625-4627.
5. Reizer J., et al. Is the ribulose monophosphate pathway widely distributed in bacteria? Microbiology. 143:1997;2519-2520.
6. Plantinga T.H., et al. Functional characterization of the Escherichia coli K-12 yiaMNO transport protein genes. Mol. Mem. Biol. 2003;. 10.1080/09687680310001607369 ( www.tandf.co.uk ).
7. Yew W.S., Gerlt J.A. Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons. J. Bacteriol. 184:2002;302-306.
8. Yasueda H., et al. Bacillus subtillis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression. J. Bacteriol. 181:1999;7154-7160.
9. Zhang Z., et al. The ascorbate transporter of Escherichia coli. J. Bacteriol. 185:2003;2243-2250.
10. Postma P.W., et al. Phosphoenolpyruvate:carbohydrate phosphotransferase systems. Neidhardt F.C., et al. Escherichia coli and Salmonella: Cellular and Molecular Biology. 1996;1149-1174 ASM Press.
11. Driessen A.J.M., et al. A new family of prokaryotic transport proteins: binding protein-dependent secondary transporters. Mol. Microbiol. 24:1997;879-883.
12. Driessen A.J.M., et al. Diversity of transport mechanisms: common structural principles. Trends Biochem. Sci. 25:2000;397-401.
13. Rabus R., et al. TRAP transporters: an ancient family of extracytoplasmic solute-receptor-dependent secondary active transporters. Microbiology. 145:1999;3431-3445.
14. Kelly D.J., Thomas G.H. The tri-partite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea. FEMS Microbiol. Rev. 25:2001;405-424.
15. Poolman B., Konings W.N. Secondary solute transport in bacteria. Biochim. Biophys. Acta. 1183:1993;5-39.
16. Higgins C.F. ABC transporters: physiology, structure and mechanism - an overview. Res. Microbiol. 152:2001;205-210.
17. Campos E., et al. The gene yjfQ encodes the repressor of the yjfR-X regulon (ula) which is involved in L-ascorbate metabolism in Escherichia coli. J. Bacteriol. 184:2002;6065-6068.
18. Tamames J. Evolution of gene order conservation in prokaryotes. Genome Biol. 2001;. RESEARCH0020 ( www.genomebiology.com ).