메뉴 건너뛰기




Volumn 26, Issue 4, 2003, Pages 537-543

Comparative molecular analysis of Herbaspirillum strains by RAPD, RFLP, and 16S rDNA sequencing

Author keywords

16S rDNA; Herbaspirillum; Phylogeny; RAPD; RFLP

Indexed keywords

BACTERIAL DNA; DNA 16S; PRIMER DNA;

EID: 0347358992     PISSN: 14154757     EISSN: None     Source Type: Journal    
DOI: 10.1590/S1415-47572003000400019     Document Type: Article
Times cited : (14)

References (33)
  • 1
    • 0022629490 scopus 로고
    • Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen fixing bacterium
    • Baldani JI, Baldani VLD, Seldin L and Döbereiner J (1986) Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen fixing bacterium. Int J Syst Bacteriol. 36:86-93.
    • (1986) Int. J. Syst. Bacteriol. , vol.36 , pp. 86-93
    • Baldani, J.I.1    Baldani, V.L.D.2    Seldin, L.3    Döbereiner, J.4
  • 2
    • 0002532959 scopus 로고
    • Identification and ecology of Herbaspirillum seropedicae and the closely related Pseudomonas rubrisubalbicans
    • Baldani VLD, Baldani JI, Olivares F and Döbereiner J (1992) Identification and ecology of Herbaspirillum seropedicae and the closely related Pseudomonas rubrisubalbicans. Symbiosis 13:65-73.
    • (1992) Symbiosis , vol.13 , pp. 65-73
    • Baldani, V.L.D.1    Baldani, J.I.2    Olivares, F.3    Döbereiner, J.4
  • 3
    • 0002319779 scopus 로고
    • 15N-labeled fertilizer
    • 202 International Symposium on Sustainable Agriculture for the tropics - The role of Biological Nitrogen Fixation, Angra dos Reis, Brazil
    • 15N-labeled fertilizer. 202. International Symposium on Sustainable Agriculture for the tropics - The role of Biological Nitrogen Fixation, Angra dos Reis, Brazil.
    • (1995)
    • Baldani, V.L.D.1    Olivares, F.L.2    Döbereiner, J.3
  • 4
    • 12644298689 scopus 로고    scopus 로고
    • Emended description of Herbaspirillum; inclusion of [Pseudomonas] rubrisubalbicans, a mild plant pathogen, as Herbaspirillum rubrisubalbicans comb. nov.; and classification of clinical isolates (EF group 1) as Herbaspirillum species 3
    • Baldani JI, Pot B, Kirchhof G, Falsen E, Baldani VLD, Olivares FL, Hoste B, Kersters K, Hartmann A, Gillis M and Döbereiner J (1996) Emended description of Herbaspirillum; inclusion of [Pseudomonas] rubrisubalbicans, a mild plant pathogen, as Herbaspirillum rubrisubalbicans comb. nov.; and classification of clinical isolates (EF group 1) as Herbaspirillum species 3. Int J Syst Bacteriol 46:802-810.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 802-810
    • Baldani, J.I.1    Pot, B.2    Kirchhof, G.3    Falsen, E.4    Baldani, V.L.D.5    Olivares, F.L.6    Hoste, B.7    Kersters, K.8    Hartmann, A.9    Gillis, M.10    Döbereiner, J.11
  • 5
    • 0030678045 scopus 로고    scopus 로고
    • Isolation of endophytic diazotrophic bacteria from wetland rice
    • Barraquio WL, Revilla L and Ladha JK (1997) Isolation of endophytic diazotrophic bacteria from wetland rice. Plant Soil 194:15-24.
    • (1997) Plant. Soil , vol.194 , pp. 15-24
    • Barraquio, W.L.1    Revilla, L.2    Ladha, J.K.3
  • 6
    • 0031939581 scopus 로고    scopus 로고
    • Production of indole-3-acetic acid and gibberellins A1 and A3 by Acetobacter diazotrophicus and Herbaspirillum seropedicae in chemically-defined culture media
    • Bastián F, Cohen A, Piccoli P, Luna V, Baraldi R and Bottini R (1998) Production of indole-3-acetic acid and gibberellins A1 and A3 by Acetobacter diazotrophicus and Herbaspirillum seropedicae in chemically-defined culture media. Plant Growth Regul 24:7-11.
    • (1998) Plant. Growth Regul. , vol.24 , pp. 7-11
    • Bastián, F.1    Cohen, A.2    Piccoli, P.3    Luna, V.4    Baraldi, R.5    Bottini, R.6
  • 8
    • 0028330740 scopus 로고
    • Limited genetic diversity in the endophytic sugarcane bacterium Acetobacter diazotrophicus
    • Caballero-Mellado J and Martinez-Romero E (1994) Limited genetic diversity in the endophytic sugarcane bacterium Acetobacter diazotrophicus. Appl Environ Microbiol 60:1532-1537.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1532-1537
    • Caballero-Mellado, J.1    Martinez-Romero, E.2
  • 9
    • 0036708323 scopus 로고    scopus 로고
    • Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia Genomovar III
    • Coenye T, Spilker T, Martin A and LiPuma JJ (2002) Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia Genomovar III. J Clin Microbiol 40:3300-3307.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 3300-3307
    • Coenye, T.1    Spilker, T.2    Martin, A.3    LiPuma, J.J.4
  • 10
    • 0035346929 scopus 로고    scopus 로고
    • 16S ribosomal DNA characterization of nitrogen-fixing bacteria isolated from banana (Musa spp.) and pineapple (Ananas comosus (L.) Merril)
    • Cruz LM, Souza EM, Weber OB, Baldani JI, Döbereiner J and Pedrosa FO (2001) 16S ribosomal DNA characterization of nitrogen-fixing bacteria isolated from banana (Musa spp.) and pineapple (Ananas comosus (L.) Merril). Appl Environ Microbiol 67:2375-2379.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2375-2379
    • Cruz, L.M.1    Souza, E.M.2    Weber, O.B.3    Baldani, J.I.4    Döbereiner, J.5    Pedrosa, F.O.6
  • 11
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26:297-302.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 13
    • 0000364318 scopus 로고
    • The genera Azospirillum and Herbaspirillum
    • Ballows A, Triiper HG, Dowrkin M, Harder W (eds) Berlin: Springer-Verlag
    • Döbereiner J (1991) The genera Azospirillum and Herbaspirillum. In: Ballows A, Triiper HG, Dowrkin M, Harder W (eds) The Prokaryotes. Berlin: Springer-Verlag, pp 2236-2253.
    • (1991) The Prokaryotes , pp. 2236-2253
    • Döbereiner, J.1
  • 14
    • 0002359476 scopus 로고
    • Endophytic occurrence of diazotrophic bacteria in non-leguminous crops
    • Fendrik I, del Gallo M, Vanderleyden J, de Zamaroczy M (eds) Berlin, Heidelberg: Springer-Verlag
    • Döbereiner J, Baldani VLD and Reis VM (1995) Endophytic occurrence of diazotrophic bacteria in non-leguminous crops. In: Fendrik I, del Gallo M, Vanderleyden J, de Zamaroczy M (eds) Azospirillum VI and related microorganisms. Berlin, Heidelberg: Springer-Verlag, pp 15-30.
    • (1995) Azospirillum VI and Related Microorganisms , pp. 15-30
    • Döbereiner, J.1    Baldani, V.L.D.2    Reis, V.M.3
  • 15
    • 0002238811 scopus 로고
    • Taxonomic relationships between [Pseudomonas) rubrisubalbicans, some clinical isolates (EF GROUP 1), Herbaspirillum seropedicae and [Aquaspirillum) authrotrophicum
    • Polsinelli M, Materassi R, Vincenzini M (eds) Dordrecht: kluver Acad. Publish
    • Gillis M, Döbereiner J, Pot B, Goor M, Falsen E, Hoste B, Reinhold B and Kersters K (1990) Taxonomic relationships between [Pseudomonas) rubrisubalbicans, some clinical isolates (EF GROUP 1), Herbaspirillum seropedicae and [Aquaspirillum) authrotrophicum. In: Polsinelli M, Materassi R, Vincenzini M (eds) Nitrogen Fixation. Dordrecht: kluver Acad. Publish. pp 293-294.
    • (1990) Nitrogen Fixation , pp. 293-294
    • Gillis, M.1    Döbereiner, J.2    Pot, B.3    Goor, M.4    Falsen, E.5    Hoste, B.6    Reinhold, B.7    Kersters, K.8
  • 16
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell RR, Larsen N and Woese CR (1994) Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol Rev 58:10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 17
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 18
    • 0026693586 scopus 로고
    • A contig assembly program based on sensitive detection of fragment overlaps
    • Huang X (1992) A contig assembly program based on sensitive detection of fragment overlaps. Genomics 14:18-25.
    • (1992) Genomics , vol.14 , pp. 18-25
    • Huang, X.1
  • 20
    • 0030671229 scopus 로고    scopus 로고
    • Effect of nitrogen compounds on nitrogenase activity in Herbaspirillum seropedicae SMR1
    • Klassen G, Pedrosa FO, Souza EM, Funayama S and Rigo LU (1997) Effect of nitrogen compounds on nitrogenase activity in Herbaspirillum seropedicae SMR1. Can J Microbiol 43:887-891.
    • (1997) Can. J. Microbiol. , vol.43 , pp. 887-891
    • Klassen, G.1    Pedrosa, F.O.2    Souza, E.M.3    Funayama, S.4    Rigo, L.U.5
  • 21
    • 0036139211 scopus 로고    scopus 로고
    • Mega 2: Molecular evolutionary genetic analysis software
    • Kumar S, Tamura K, Jakobsen IB and Nei M (2001) Mega 2: molecular evolutionary genetic analysis software, Bioinformatics 17:1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 22
    • 0036702150 scopus 로고    scopus 로고
    • Evaluation of performance of four genotypic methods for studying the genetic epidemiology of Aspergillus fumigatus isolates
    • Lasker BA (2002) Evaluation of performance of four genotypic methods for studying the genetic epidemiology of Aspergillus fumigatus isolates. J Clin Microbiol 40:2886-2892.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 2886-2892
    • Lasker, B.A.1
  • 23
    • 15144358617 scopus 로고    scopus 로고
    • Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies
    • Luz SP, Rodriguez-Valera F, Lan R and Reeves PR (1998) Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies. J Bacteriol 180:2144-2151.
    • (1998) J. Bacteriol. , vol.180 , pp. 2144-2151
    • Luz, S.P.1    Rodriguez-Valera, F.2    Lan, R.3    Reeves, P.R.4
  • 24
    • 0001534985 scopus 로고
    • Genetic diversity in natural populations of a soil bacterium across a landscape gradient
    • McArthur JV, Kovacic DA and Smith MH (1988) Genetic diversity in natural populations of a soil bacterium across a landscape gradient. Proc Natl Acad Sci 85:9621-9624.
    • (1988) Proc. Natl. Acad. Sci. , vol.85 , pp. 9621-9624
    • McArthur, J.V.1    Kovacic, D.A.2    Smith, M.H.3
  • 26
    • 0031445147 scopus 로고    scopus 로고
    • Infection of mottled stripe disease-susceptible and resistant sugar cane varieties by the endophytic diazotroph Herbaspirillum
    • Olivares FL, James EK, Baldani JI and Döbereiner J (1996) Infection of mottled stripe disease-susceptible and resistant sugar cane varieties by the endophytic diazotroph Herbaspirillum. New Phytol 135:723-737.
    • (1996) New Phytol. , vol.135 , pp. 723-737
    • Olivares, F.L.1    James, E.K.2    Baldani, J.I.3    Döbereiner, J.4
  • 28
    • 0000825481 scopus 로고
    • A statistical method for evaluating systematic relationships
    • Sokal RR and Michener CD (1958) A statistical method for evaluating systematic relationships. Univ Kans Sci Bull 38:1409-1438.
    • (1958) Univ. Kans. Sci. Bull. , vol.38 , pp. 1409-1438
    • Sokal, R.R.1    Michener, C.D.2
  • 29
    • 0034333390 scopus 로고    scopus 로고
    • Random amplification of polymorphic DNA versus pulsed field gel electrophoresis of SmaI DNA macrorestriction fragments for typing strains of vancomycin-resistant enterococci
    • van den Braak N, Power E, Anthony R, Endtz HP, Verbrugh HA and van Belkum A (2000) Random amplification of polymorphic DNA versus pulsed field gel electrophoresis of SmaI DNA macrorestriction fragments for typing strains of vancomycin-resistant enterococci. FEMS Microbiol Lett 192:45-52.
    • (2000) FEMS Microbiol. Lett. , vol.192 , pp. 45-52
    • van den Braak, N.1    Power, E.2    Anthony, R.3    Endtz, H.P.4    Verbrugh, H.A.5    van Belkum, A.6
  • 30
    • 0027508951 scopus 로고
    • Artifactual variation in randomly amplified polymorphic DNA banding patterns
    • Wang D, Wayne MMY, Taricani M, Buckingam K and Sandham HJ (1993) Artifactual variation in randomly amplified polymorphic DNA banding patterns. Biotechniques 14:214-218.
    • (1993) Biotechniques , vol.14 , pp. 214-218
    • Wang, D.1    Wayne, M.M.Y.2    Taricani, M.3    Buckingam, K.4    Sandham, H.J.5
  • 31
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese CR (1987) Bacterial evolution. Microbiol Rev 512:221-71.
    • (1987) Microbiol. Rev. , vol.512 , pp. 221-271
    • Woese, C.R.1
  • 32
    • 0025872372 scopus 로고
    • Phylogeny of the phototrophic Rhizobium strains BTAil by polymerase chain reaction-based sequencing of a 16S rRNA gene segment
    • Young JPW, Downer HL and Eardly BD (1991) Phylogeny of the phototrophic Rhizobium strains BTAil by polymerase chain reaction-based sequencing of a 16S rRNA gene segment. J Bacteriol 173:2271-2277.
    • (1991) J. Bacteriol. , vol.173 , pp. 2271-2277
    • Young, J.P.W.1    Downer, H.L.2    Eardly, B.D.3
  • 33
    • 0036039776 scopus 로고    scopus 로고
    • A RAPD-PCR geno-typing assay which correlates with serotypes. of group B streptococci
    • Zhang GW, Kotiw M and Daggard G (2002) A RAPD-PCR geno-typing assay which correlates with serotypes. of group B streptococci. Lett Appl Microbiol 35:247-250.
    • (2002) Lett. Appl. Microbiol. , vol.35 , pp. 247-250
    • Zhang, G.W.1    Kotiw, M.2    Daggard, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.