Resuscitation-promoting factors possess a lysozyme-like domain

Trends in Biochemical Sciences

Volumn 29, Issue 1, 2004, Pages 7-10

  Cohen Gonsaud, Martin ^a   Keep, Nicholas H ^a   Davies, Angharad P ^b   Ward, John ^c   Henderson, Brian ^d   Labesse, Gilles ^e  

^a UNIVERSITY OF LONDON   (United Kingdom)

^b ROYAL FREE AND UNIVERSITY COLLEGE MEDICAL SCHOOL   (United Kingdom)

^c UNIVERSITY COLLEGE LONDON   (United Kingdom)

^d UNIVERSITY COLLEGE LONDON   (United Kingdom)

^e CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CYTOKINE; LYSOZYME; RESUSCITATION PROMOTING FACTOR; RESUSCITATION-PROMOTING FACTOR; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANIMAL; CATALYSIS; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN TERTIARY STRUCTURE; REVIEW; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

ANIMALIA; BACTERIA (MICROORGANISMS);

EID: 0347318055     PISSN: 09680004     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tibs.2003.10.009     Document Type: Short Survey

References (29)

1. Mukamolova G.V., et al. A bacterial cytokine. Proc. Natl. Acad. Sci. U. S. A. 95:1998;8916-8921.
2. Kell D.B., Young M. Bacterial dormancy and culturability: the role of autocrine growth factors. Curr. Opin. Microbiol. 3:2000;238-243.
3. Mukamolova G.V., et al. A family of autocrine growth factors in Mycobacterium tuberculosis. Mol. Microbiol. 46:2002;623-635.
4. Pedulla M.L., et al. Origins of highly mosaic mycobacteriophage genomes. Cell. 113:2003;171-182.
5. Mukamolova G.V., et al. The rpf gene of Micrococcus luteus encodes an essential secreted growth factor. Mol. Microbiol. 46:2002;611-622.
6. Birkeland N.-K. Cloning and molecular characterization and expression of the genes encoding the lytic function of lactococcal bacteriophage φLC3: a dual lysis system of modular design. Can. J. Microbiol. 40:1994;658-665.
7. Bateman A., Bycroft M. The structure of a LysM domain from E.coli membrane-bound lytic murein transglycosylase D (MltD). J. Mol. Biol. 299:2000;1113-1119.
8. Bairoch A., Apweiler R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28:2000;45-48.
9. Benson D.A., et al. GenBank. Nucleic Acids Res. 30:2002;17-20.
10. Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
11. Kelley L.A., et al. Enhanced genome annotation using structural profiles in the program 3D-PSSM. J. Mol. Biol. 299:2000;499-520.
12. Shi J., et al. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J. Mol. Biol. 310:2001;243-257.
13. McGuffin L.J., et al. The PSIPRED protein structure prediction server. Bioinformatics. 16:2000;404-405.
14. Karplus K., et al. Hidden Markov models for detecting remote protein homologies. Bioinformatics. 14:1998;846-856.
15. Douguet D., Labesse G. Easier threading through web-based comparisons and cross-validations. Bioinformatics. 17:2001;752-753.
16. Kuroki R., et al. Structural basis of the conversion of T4 lysozyme into a transglycosidase by reengineering the active site. Proc. Natl. Acad. Sci. U. S. A. 96:1999;8949-8954.
17. Weaver L.H., et al. The refined structures of goose lysozyme and its complex with a bound trisaccharide show that the 'goose-type' lysozymes lack a catalytic aspartate residue. J. Mol. Biol. 245:1995;54-68.
18. Vollan V.B., et al. Structural studies on the binding of 4-methylumbelliferone glycosides of chitin to rainbow trout lysozyme. Acta Crystallogr. D Biol. Crystallogr. 55:1999;60-66.
19. Walsh M.A., et al. Refinement of triclinic hen egg-white lysozyme at atomic resolution. Acta Crystallogr. D Biol. Crystallogr. 54:1998;522-546.
20. Labesse G., Mornon J.-P. A tool for incremental threading optimization (TITO) to help alignment and modelling of remote homologs. Bioinformatics. 14:1998;206-211.
21. Dunbrack R.L. Jr, Karplus M. Backbone-dependent rotamer library for proteins. Application to side-chain prediction. J. Mol. Biol. 230:1993;543-574.
22. Sali A., Blundell T.L. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234:1993;779-815.
23. Eisenberg D., et al. VERIFY3D: assessment of protein models with three-dimensional profiles. Methods Enzymol. 277:1997;396-404.
24. Sippl M.J. Recognition of errors in three-dimensional structures of proteins. Proteins. 17:1993;355-362.
25. Colovos C., Yeates T.O. Verification of protein structures: patterns of nonbonded atomic interactions. Protein Sci. 2:1993;1511-1519.
26. Vocadlo D., et al. Catalysis by hen egg-white lysozyme proceeds via a covalent intermediate. Nature. 412:2001;835-838.
27. Combet C., et al. NPS@: network protein sequence analysis. Trends Biochem. Sci. 25:2000;147-150.
28. Xue Y., et al. α-Lactalbumin mutant acting as Lysozyme. Proteins Struct. Funct. Genet. 42:2000;17-22.
29. Sun, Zhang. Spent culture supernatant of Mycobacterium tuberculosis H37Ra improves viability of aged cultures of this strain and allows small inocula to initiate growth. J. Bacteriol. 181:1999;7626-7628.