Hepatitis C Genotyping by Denaturing High-Performance Liquid Chromatography

Journal of Clinical Microbiology

Volumn 42, Issue 1, 2004, Pages 158-163

  Liew, Michael ^a   Erali, Maria ^a   Page, Sam ^a   Hillyard, David ^a,b   Wittwer, Carl ^a,b  

^a ARUP INSTITUTE FOR CLINICAL AND EXPERIMENTAL PATHOLOGY   (United States)

^b UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; DENATURING HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; GENOTYPE; HEPATITIS C VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RELIABILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS TYPING;

5' UNTRANSLATED REGIONS; BASE SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; GENOTYPE; HEPACIVIRUS; MOLECULAR SEQUENCE DATA;

HEPATITIS C VIRUS; RNA VIRUSES;

EID: 0347093289     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.42.1.158-163.2004     Document Type: Article

References (24)

1. Akuta, N., F. Suzuki, A. Tsubota, Y. Suzuki, T. Hosaka, T. Someya, M. Kobayashi, S. Saitoh, Y. Arase, K. Ikeda, and H. Kumada. 2003. Association of amino acid substitution pattern in nonstructural protein 5A of hepatitis C virus genotype2a low viral load and response to interferon monotherapy. J. Med. Virol. 69:376-383.
2. Bullock, G. C., D. E. Bruns, and D. M. Haverstick. 2002. Hepatitis C genotype determination by melting curve analysis with a single set of fluorescence resonance energy transfer probes. Clin. Chem. 48:2147-2154.
3. Chen, Z., and K. E. Weck. 2002. Hepatitis C virus genotyping: interrogation of the 5′ untranslated region cannot accurately distinguish genotypes 1a and 1b. J. Clin. Microbiol. 40:3127-3134.
4. Corbet, S., J. Bukh, A. Heinsen, and A. Fomsgaard. 2003. Hepatitis C virus subtyping by a core envelope 1-based reverse transcriptase PCR assay with sequencing and its use in determining subtype distribution among Danish patients. J. Clin. Microbiol. 41:1091-1100.
5. Di Bisceglie, A. M., and J. H. Hoofnagle. 2002. Optimal therapy of hepatitis C. Hepatology 36:S121-S127.
6. Gross, E., K. Seck, S. Neubauer, J. Mayr, H. Hellebrand, A. Ratanaphan, V. Lutz, H. Stockinger, and M. Kiechle. 2003. High-throughput genotyping by DHPLC of the dihydropyrimidine dehydrogenase gene implicated in (fluoro)pyrimidine catabolism. Int. J. Oncol. 22:325-332.
7. Hurtle, W., D. Shoemaker, E. Henchal, and D. Norwood. 2002. Denaturing HPLC for identifying bacteria. BioTechniques 33:386-388, 390-391.
8. Jessner, W., R. Stauber, F. Hackl, C. Datz, T. Watkins-Riedel, H. Hofer, A. Gangl, H. Kessler, and P. Ferenci. 2003. Early viral kinetics on treatment with pegylated interferon-alpha-2a in chronic hepatitis C virus genotype 1 infection. J. Viral Hepatol. 10:37-42.
9. Kolykhalov, A. A., E. V. Agapov, K. J. Blight, K. Mihalik, S. M. Feinstone, and C. M. Rice. 1997. Transmission of hepatitis C by intrahepatic inoculation with transcribed RNA. Science 277:570-574.
10. Liou, T. C., T. T. Chang, K. C. Young, X. Z. Lin, C. Y. Lin, and H. L. Wu. 1992. Detection of HCV RNA in saliva, urine, seminal fluid, and ascites. J. Med. Virol. 37:197-202.
11. Maertens, G., and L. Stuyver. 1997. Genotypes and genetic variation of hepatitis C virus, p. 183-234. In T. G. Harrison and A. J. Zuckerman (ed.), The molecular medicine of viral hepatitis. John Wiley & Sons Ltd., Chichester, England.
12. Mitchell, P. S., L. M. Sloan, D. W. Majewski, P. N. Rys, P. J. Heimgartner, J. E. Rosenblatt, F. R. Cockerill III, T. F. Smith, and R. Patel. 2002. Comparison of line probe assay and DNA sequencing of 5′ untranslated region for genotyping hepatitis C virus: description of novel line probe patterns. Diagn. Microbiol. Infect. Dis. 42:175-179.
13. Otagiri, H., Y. Fukuda, I. Nakano, Y. Katano, H. Toyoda, S. Yokozaki, K. Hayashi, T. Hayakawa, M. Kinoshita, and J. Takamatsu. 2002. Evaluation of a new assay for hepatitis C virus genotyping and viral load determination in patients with chronic hepatitis C. J. Virol. Methods 103:137-143.
14. Pallares-Ruiz, N., P. Blanchet, M. Mondain, S. Low-Hong, J. Demaille, M. Claustres, and A. F. Roux. 2001. Evaluation of dHPLC for CX26 mutation screening in patients from southern France with sensorineural deafness. Genet. Test. 5:339-343.
15. Roque-Afonso, A. M., M. P. Ferey, J. D. Poveda, E. Marchadier, and E. Dussaix. 2002. Performance of TRUGENE hepatitis C virus 5′ noncoding genotyping kit, a new CLIP sequencing-based assay for hepatitis C virus genotype determination. J. Viral Hepatol. 9:385-389.
16. Saracco, G., A. Olivero, A. Ciancio, S. Carenzi, and M. Rizzetto. 2003. Therapy of chronic hepatitis C: a critical review. Curr. Drug Targets Infect. Disord. 3:25-32.
17. Schaeffeler, E., T. Lang, U. M. Zanger, M. Eichelbaum, and M. Schwab. 2001. High-throughput genotyping of thiopurine S-methyltransferase by denaturing HPLC. Clin. Chem. 47:548-555.
18. Schroter, M., B. Zollner, P. Schafer, O. Landt, U. Lass, R. Laufs, and H. H. Feucht. 2002. Genotyping of hepatitis C virus types 1, 2, 3, and 4 by a one-step LightCycler method using three different pairs of hybridization probes. J. Clin. Microbiol. 40:2046-2050.
19. Shlush, L. I., D. M. Behar, A. Zelazny, N. Keller, J. R. Lupski, A. L. Beaudet, and D. Bercovich. 2002. Molecular epidemiological analysis of the changing nature of a meningococcal outbreak following a vaccination campaign. J. Clin. Microbiol. 40:3565-3571.
20. White, P. A., X. Zhai, I. Carter, Y. Zhao, and W. D. Rawlinson. 2000. Simplified hepatitis C virus genotyping by heteroduplex mobility analysis. J. Clin. Microbiol. 38:477-482.
21. Xiao, W., and P. J. Oefner. 2001. Denaturing high-performance liquid chromatography: a review. Hum. Mutat. 17:439-474.
22. Yoshida, N., Y. Nishimaki, M. Sugiyama, T. Abe, T. Tatsumi, A. Tanoue, A. Hirasawa, and G. Tsujimoto. 2002. SNP genotyping in the beta(2)-adrenergic receptor by electronic microchip assay, DHPLC, and direct sequencing. J. Hum. Genet. 47:500-503.
23. Zein, C. O., and N. N. Zein. 2002. Advances in therapy for hepatitis C infection. Microbes Infect. 4:1237-1246.
24. Zhao, W., W. Liu, Q. Liu, L. Zhang, Z. Zhou, X. Liu, and H. Zhang. 2002. Genotyping of hepatitis C virus by hepatitis gene diagnosis microarray. Zhonghua Yi Xue Za Zhi 82:1249-1253.