Genotyping of the JC Virus in Urine Samples of Healthy Korean Individuals

Journal of Medical Virology

Volumn 72, Issue 2, 2004, Pages 281-289

  Jeong, Byung Hoon ^a   Lee, Kyung Hee ^a   Choi, Eun Kyoung ^a   Kim, Kyunghoon ^b   Kim, Yong Sun ^a  

^a Hallym University   (South Korea)

^b Kangwon National University   (South Korea)

Author keywords

Genotype; JC virus; Phylogenetic analysis; Polyomavirus

Indexed keywords

SPACER DNA; VIRUS DNA;

ADOLESCENT; ADULT; ARTICLE; ASIAN; CHILD; CLINICAL ARTICLE; CONTROLLED STUDY; DNA SCREENING; DNA SEQUENCE; EUROPE; GENOTYPE; HUMAN; JC VIRUS; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION; PREVALENCE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; URINE; VIRUS ISOLATION; VIRUS STRAIN;

ADOLESCENT; ADULT; BASE SEQUENCE; CHILD; CHILD, PRESCHOOL; DNA, VIRAL; GENOTYPE; HUMANS; INFANT; JC VIRUS; KOREA; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYOMAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; TUMOR VIRUS INFECTIONS; URINE;

JC VIRUS; POLYOMAVIRUS;

EID: 0347064336     PISSN: 01466615     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmv.10568     Document Type: Article

References (48)

1. Agostini HT, Brubaker GR, Shao J, Levin A, Ryschkewitsch CF, Blattner WA, Stoner GL. 1995. BK virus and a new type of JC virus excreted by HIV-1 positive patients in rural Tanzania. Arch Virol 140:1919-1934.
2. Agostini HT, Ryschkewitsch CF, Stoner GL. 1996. Genotype profile of human polyomavirus JC excreted in urine of immunocompetent individuals. J Clin Microbiol 34:159-164.
3. Agostini HT, Yanagihara R, Davis V, Ryschkewitsch CF, Stoner GL. 1997. Asian genotypes of JC virus in Native Americans and in a Pacific Island population: Markers of viral evolution and human migration. Proc Natl Acad Sci USA 94:14542-14546.
4. Chan SY, Ho L, Ong CK, Chow V, Drescher B, Durst M, ter Meulen J, Villa L, Luande J, Mgaya HN, Bernard HU. 1992. Molecular variants of human papillomavirus type 16 from four continents suggest ancient pandemic spread of the virus and its coevolution with humankind. J Virol 66:2057-2066.
5. Chang D, Wang M, Ou WC, Lee MS, Ho HN, Tsai RT. 1996a. Genotypes of human polyomaviruses in urine samples of pregnant women in Taiwan. J Med Virol 48:95-101.
6. Chang D, Tsai RT, Wang M, Ou WC. 1996b. Different genotypes of human polyomaviruses found in patients with autoimmune diseases in Taiwan. J Med Virol 48:204-209.
7. Chang D, Sugimoto C, Wang M, Tsai RT, Yogo Y. 1999. JC virus genotypes in a Taiwan aboriginal tribe (Bunun): Implications for its population history. Arch Virol 144:1081-1090.
8. Chang H, Wang M, Tsai RT, Lin HS, Huan JS, Wang WC, Chang D. 2002. High incidence of JCV viruria in JC-seropositive older individuals. J Neurovirol 8:447-451.
9. Chesters PM, Heritage J, Mccance DJ. 1983. Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues. J Infect Dis 147:676-684.
10. Del Valle L, Azizi SA, Krynska B, Enam S, Croul SE, Khalili K. 2000. Reactivation of human neurotropic JC virus expressing oncogenic protein in a recurrent glioblastoma multiforme. Ann Neurol 48:932-936.
11. Del Valle L, Delbue S, Gordon J, Enam S, Croul S, Ferrante P, Khalili K. 2002. Expression of JC virus T-antigen in a patient with MS and glioblastoma multiforme. Neurology 58:895-900.
12. Dubois V, Moret H, Lafon ME, Brodard V, Icart J, Ruffault A, Guist'hau O, Buffet-Janvresse C, Abbed K, Dussaix E, Ingrand D. 2001. JC virus genotypes in France: Molecular epidemiology and potential significance for progressive multifocal leukoencephalopathy. J Infect Dis 183:213-217.
13. Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
14. Fernandez-Cobo M, Agostini HT, Britez G, Ryschkewitsch CF, Stoner GL. 2002. Strains of JC virus in Amerind-speakers of North America (Salish) and South America (Guarani), Na-Dene-speakers of New Mexico (Navajo), and modern Japanese suggest links through an ancestral Asian population. Am J Phys Anthropol 118:154-168.
15. Frisque RJ, Bream GL, Cannella MT. 1984. Human polyomavirus JC virus genome. J Virol 51:458-469.
16. Guo J, Kitamura T, Ebihara H, Sugimoto C, Kunitake T, Takehisa J, Na YQ, Al-Ahdal MN, Hallin A, Kawabe K, Taguchi F, Yogo Y. 1996. Geographical distribution of the human polyomavirus JC virus type A and B and isolation of a new type from Ghana. J Gen Virol 77:919-927.
17. Guo J, Sugimoto C, Kitamura T, Ebihara H, Kato A, Guo Z, Liu J, Zheng SP, Wang YL, Na YQ, Suzuki M, Taguchi F, Yogo Y. 1998. Four geographically distinct genotypes of JC virus are prevalent in China and Mongolia: Implications for the racial composition of modern China. J Gen Virol 79:2499-2505.
18. Hanihara K. 1991. Dual structure model for the population history of the Japanese. Jpn Rev 2:1-33.
19. Hatwell JN, Sharp PM. 2000. Evolution of human polyomavirus JC. J Gen Virol 81:1191-1200.
20. Ho L, Chan SY, Burk RD, Das BC, Fujinaga K, Icenogle JP, Kahn T, Kiviat N, Lancaster W, Mavromara-Nazos P, Lavropoulou V, Mitrani-Rosenbaum S, Norrild B, Pillai MR, Stoerker J, Syrjaenen K, Syrjaenen S, Tay SK, Villa LL, Wheeler CM, Williamson AL, Bernard HU. 1993. The genetic drift of human papillomavirus type 16 is a means of reconstructing prehistoric viral spread and the movement of ancient human populations. J Virol 67:6413-6423.
21. Jeong BH, Jin JK, Choi EK, Kim KH, Choi KW, Oh MD, Shin KC, Kim YS. 2002. Detection of JCV type 1 in peripheral lymphocytes, brain, and cerebrospinal fluid from two Korean AIDS patients with progressive multifocal leukoencephalopathy. Intervirology 45: 94-100.
22. Jobes DV, Chima SC, Ryschkewitsch CF, Stoner GL. 1998. Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus. J Gen Virol 79:2491-2498.
23. Kato A, Kitamura T, Sugimoto C, Ogawa Y, Nakazato K, Nagashima K, Hall WW, Kawabe K, Yogo Y. 1997. Lack of evidence for the transmission of JC polyomavirus between human populations. Arch Virol 142:875-882.
24. Khalili K, Stoner GL. 2001. Human polyomaviruses: Molecular and clinical perspectives. New York: John Wiley & Sons. pp 4-5.
25. Khalili K, Krynska B, Del Valle L, Katsetos C, Croul S. 1999. Medullobastoma and the human neurotropic polyomavirus JC virus. Lancet 353:1152-1153.
26. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120.
27. Kitamura T, Aso Y, Kuniyoshi N, Hara K, Yogo Y. 1990. High incidence of urinary JC virus excretion in nonimmunosuppressed older patients. J Infect Dis 161:1128-1133.
28. Kitamura T, Kunitake T, Guo J, Tominaga T, Kawabe K, Yogo Y. 1994. Transmission of the human polyomavirus JC virus occurs both within the family and outside the family. J Clin Microbiol 32:2359-2363.
29. Kitamura T, Sugimoto C, Ebihara H, Kato A, Guo J, Taguchi F, Tominaga T, Ogawa Y, Ohta N, Kizu N, Imamura K, Funaki H, Kurosawa T, Ichikawa S, Suzuki T, Chiba K, Nagashima K, Yasumoto S, Yogo Y. 1998. Peopling of Japan as revealed by genotyping of urinary JC virus DNA. Anthropol Sci 106:327-347.
30. Knowles WA, Pillay D, Johnson MA, Hand JF, Brown DW. 1999. Prevalence of long-term BK and JC excretion in HIV-infected adults and lack of correlation with serological markers. J Med Virol 59: 474-479.
31. Krynska B, Del Valle L, Croul S, Gordon J, Katsetos CD, Carbone M, Giordano A, Khalili K. 1999. Detection of human neurotropic JC virus DNA sequence and expression of the viral oncogenic protein in pediatric medulloblastomas. Proc Natl Acad Sci USA 96:11519-11524.
32. Kunitake T, Kitamura T, Guo J, Taguchi F, Kawabe K, Yogo Y. 1995. Parent-to-child transmission is relatively common in the spread of the human polyomavirus JC virus. J Clin Microbiol 33:1448-1451.
33. Ong CK, Chan SY, Campo MS, Fujinaga K, Mavromara-Nazos P, Labropoulou V, Pfister H, Tay SK, ter Meulen J, Villa LL, Bernard HU. 1993. Evolution of human papillomavirus type 18: An ancient phylogenetic root in Africa and intratype diversity reflect coevolution with human ethnic groups. J Virol 67:6424-6431.
34. Padgett BL, Walker DL. 1973. Prevalence of antibodies in human sera against JC virus, an isolate from a case of progressive multifocal leukoencephalopathy. J Infect Dis 127:467-470.
35. Padgett BL, Walker DL, Zurhein GM, Eckroade RJ, Dessel BH. 1971. Cultivation of papova-like virus from human brain with progressive multifocal leucoencephalopathy. Lancet I:1257-1260.
36. Page RDM. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358.
37. Saito M, Moritoyo T, Park JH, Lee BI, Kim JS, Fujisawa J, Osame M, Yoshida M. 1993. Nucleotide sequence analysis of HTLV-I isolate from a Korean patient with HAM/TSP. Yonsei Med J 34:321-327.
38. Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstruction phylogenetic trees. Mol Biol Evol 4:406-425.
39. Shishido Y, Nukuzuma S, Mukaigawa J, Morikawa S, Yasui K, Nagashima K. 1997. Assembly of JC virus-like particles in COS7 cells. J Med Virol 51:265-272.
40. Slattery JP, Franchini G, Gessain A. 1999. Genomic evolution, patterns of global dissemination, and interspecies transmission of human and simian T-cell leukemia/lymphotropic viruses. Genome Res 9: 525-540.
41. Stoner GL, Jobes DV, Fernandez Cobo M, Agostini HT, Chima SC, Ryschkewitsch CF. 2000. JC virus as a marker of human migration to the Americas. Microbes Infect 2:1905-1911.
42. Sugimoto C, Kitamura T, Guo J, Al-Ahdal MN, Shchelkunov SN, Otova B, Ondrejka P, Chollet JY, El-Safi S, Ettayebi M, Gresenguet G, Kocagoz T, Chaiyarasamee S, Thant KZ, Thein S, Moe K, Kobayashi N, Taguchi F, Yogo Y. 1997. Typing of urinary JC virus DNA offers a novel means of tracing human migrations. Proc Natl Acad Sci USA 94:9191-9196.
43. Sugimoto C, Hasegawa M, Kato A, Zheng HY, Ebihara H, Taguchi F, Kitamura T, Yogo Y. 2002. Evolution of human polyomavirus JC: Implications for the population history of humans. J Mol Evol 54:285-297.
44. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
45. White FA III, Ishaq M, Stoner GL, Frisque RJ. 1992. JC virus DNA is present in many human brain samples from patients without progressive multifocal leukoencephalopathy. J Virol 66:5726-5734.
46. Yanagihara R. 1994. Geographic-specific genotypes or topotypes of human T-cell lymphotropic virus type I as markers for early and recent migrations of human populations. Adv Virus Res 43: 147-186.
47. Yanagihara R, Saitou N, Nerurkar VR, Song KJ, Bastian I, Franchini G, Gajdusek DC. 1995. Molecular phylogeny and dissemination of human T-cell lymphotropic virus type I viewed within the context of primate evolution and human migration. Cell Mol Biol 41:S145-S161.
48. Yogo Y, Kitamura T, Sugimoto C, Ueki T, Aso Y, Hara K, Taguchi F. 1990. Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals. J Virol 64:3139-3143.