PCR-Based Ribosomal DNA Detection Technique for Microalga (Heterosigma carterae) Causing Red Tide and Its Application to a Biosensor Using Labeled Probe

Marine Biotechnology

Volumn 5, Issue 5, 2003, Pages 417-423

  Asai, Ryoichi ^a,b   Ootani, Kozue ^c   Nomura, Yoko ^a   Nakamura, Chikashi ^b   Ikebukuro, Kazunori ^a   Arikawa, Yoshiko ^c   Miyake, Jun ^b   Karube, Isao ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c JAPAN WOMEN'S UNIVERSITY   (Japan)

Author keywords

Asymmetric polymerase chain reaction; Fluorescence polarization; Heterosigma carterae; Small subunit rDNA; Surface plasmon resonance

Indexed keywords

RIBOSOME DNA;

DETECTION METHOD; DNA; MICROALGA; POLYMERASE CHAIN REACTION; RED TIDE;

ALGA; ARTICLE; DNA PROBE; DNA SEQUENCE; FLUORESCENCE POLARIZATION; GENETIC PROCEDURES; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SURFACE PLASMON RESONANCE;

ALGAE; BASE SEQUENCE; BIOSENSING TECHNIQUES; DNA PROBES; DNA, RIBOSOMAL; FLUORESCENCE POLARIZATION; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SURFACE PLASMON RESONANCE;

ALGAE; HETEROSIGMA; HETEROSIGMA CARTERAE; RAPHIDOPHYCEAE;

EID: 0346965976     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-002-0081-2     Document Type: Article

References (28)

1. Adnan, Q. (1989). Red tides due to Noctilucus scintilans (Macartney) Ehrenb, and mass mortality of fish in Jarkarta Bay. In: Red Tides; Biology, Environmental Science and Toxicology, Okachi, T., Anderson, D.M., and Nemoto, T. (eds.). New York, N.Y.: Elsevier, 53-56.
2. Asai, R., Matsukawa, R., Ikebukuro, K., and Karube, I. (1998). Chemiluminescent flow-injection system for rapid detection of phytoplankton, Chattonella antiqua. Anal Lett 31:2279-2288.
3. Asai, R., Matsukawa, R., Ikebukuro, K., and Karube, I. (1999). Highly sensitive chemiluminescent flow injection detection of phytoplankton, Heterosigma carterae. Anal Chim Acta 390:237-244.
4. Black, E.A. (1989). Un dilenma mindial: cultivo de pesca y proliferation de alga. Un a perspectiva Canadiense. Aquanoticas Int 3:38-43.
5. Boustead, N.C., Chang, F.H., and MacAllum, H.J.F. (1987). Plankton blooms and salmon farming. MAF Aquacult Infor Leaflet 1:2-3.
6. Chang, F.H., Anderson, C., and Boustead, N.C. (1990). First record of Heterosigma bloom with associated mortality of cage-reared salmon in Big Glory Bay, New Zealand. N Z J Mar Fresh Res S24:461-469.
7. Gowen, R.J., and Jews, J. (1982). A flagellate bloom and associated mortalities of farmed trout and salmon in upper Loch Fyne. Scottish Mar Biol Assoc Int Rep :71-75
8. Hirashita, T., Ichimi, K., Montani, S., Nomura, M., and Tajima, S. (2000). Molecular analysis of ribosomal RNA of red tide algae obtained from the Seto Island Sea. Mar Biotechnol 2:267-273.
9. Kai, E., Sumikura, K., Ikebukuro, K., and Karube, I. (1998). Purification of single stranded DNA from asymmetric PCR product using the SMART system. Biotechniques 12:935-939.
10. Kai, E., Sawata, S., Ikebukuro, K., Iida, T., Honda, T., and Karube, I. (1999). Detection of PCR products in solution using surface plasmon resonance. Anal Chem 71:796-800.
11. Kai, E., Ikebukuro, K., Hoshina, S., Watanabe, H., and Karube, I. (2000). Detection of PCR products of Escherichia coli O157:H7 in human stool samples using surface plasmon resonance (SPR). FEMS Immunol Med Microbiol 29:283-288.
12. Mackenzie, L. (1991). Toxic and noxious phytoplankton in Big Glory Bay, Stewart Island, New Zealand. J Appl Phycol 3:19-34
13. Mackenzie, L., Rhodes, L., and White, D. (1992). An investigation of algal biotoxins in plankton and mussels from the Coromandelarea. Report to Ministry of Aquaculture and Fisheries, New Zealand, November 1992.
14. Miller, P.E., and Scholin, C.A. (1996). Identification of cultured Pseudo-Notzshia using species-specific LSU rRNA-targeted fluorescencent probes. J Phycol 32:646-655.
15. Nakanishi, K., Karube, I., Hiroshi, S., Uchida, A., and Ishida Y. (1996). Detection of red tide-causing a piezoelectric immunosensor. Anal Chim Acta 325:73-80.
16. Ohiso, I., Tsuruoka, M., Iida, T., Honda, T., and Karube, I. (2000). A fluorescence polarization assay using oligonucleotide probes for the rapid detection of verotoxin-producing Escherichia coli. J Biotech 81:15-25.
17. Rensel, J.E., Horner, R., and Postel, J.R. (1989). Effects of phytoplankton blooms on salmon aquaculture in Puget Sound Washington: initial research. Northwest Environ 5:53-69.
18. Sawata, S., Kai, E., Ikebukuro, K., Iida, T., Honda, T., and Karube, I. (1997). Novel detection system of flow injection analysis, 1: the existence of significant relation between secondary structure of DNA and sensitivity in signal detection. Nucleic Acids Symp Ser 37:247-248.
19. Sawata, S., Kai, E., Ikebukuro, K., Iida, T., Honda, T., and Karube, I. (1999). Application of peptide nucleic acid to the direct detection of deoxyribonucleic acid amplified by polymerase chain reaction. Biosensors Bioelectron 14:397-404.
20. Scholin, C.A., and Anderson, D.M. (1996). LSU rDNA-based RFLP assays for discriminating species and strains of Alexandrium. J Phycol 32:1022-1035.
21. Scholin, C.A., Herzog, M., Sogin, M., and Anderson, D.M. (1994). Identification of group-and strain-specific genetic markers for globally distributed Alexandrium. J Phycol 30:999-1011.
22. Taylor, F.J.R. (1992). The taxonomy of harmful marine phytoplankton. G Bot Ital 126:209-219.
23. Tett, P., Gowen, R., Grantham, B., and Jones, K. (1986). The phytoplankton ecology of the Fifth of Clyde sea-lochs Striven and Fyne. Proc R Soc Edinburgh 90B:223-238.
24. Tsuruoka, M., and Karube, I. (2001). Assay of nucleic acid by fluorescence polarization technique and detection of verotoxin-producing microorganisms. Official Gazette U S Patent Trademark Off Patents 1253.
25. Tsuruoka, M., Yano, K., Ikebukuro, K., McNiven, S., Takeuchi, T., and Karube, I. (1996a). Rapid detection of complementary and mismatched DNA sequences using fluorescence polarization. Anal Lett 29:1741-1749.
26. Tsuruoka, M., Yano, K., Ikebukuro, K., Nakayama, H., Masuda, Y., and Karube, I. (1996b). Optimization of the rate of DNA hybridization and rapid detection of methicillin resistant Staphylococcus aureus DNA using fluorescence polarization. J Biotech 48:201-208.
27. Tsuruoka, M., Honda, T., and Karube, I. (1997). Rapid detection of the Escherichia coli verotoxin gene using fluorescence polarization. Nippon Rinsho Jpn J Clin Med 55:741-746.
28. Yamochi, S. (1987). Mechanisms for outbreak of Hetrosigma akashiwo red tide in Osaka Bay in Japan. In: Red Tides; Biology, Environmental Science and Toxicology, Okachi, T., Anderson, D.M., and Nemolo, T. (eds.). New York, N.Y.: Elsevier, 353-356.