Hybrid zones as a tool for identifying adaptive genetic variation in outbreeding forest trees: Lessons from wild annual sunflowers (Helianthus spp.)

Forest Ecology and Management

Volumn 197, Issue 1-3, 2004, Pages 49-64

  Lexer, Christian ^a,d   Heinze, Berthold ^b   Alia, Ricardo ^c   Rieseberg, Loren H ^a  

^a INDIANA UNIVERSITY   (United States)

^b FEDERAL RESEARCH AND TRAINING CENTRE FOR FORESTS   (Austria)

^c Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria   (Spain)

^d JODRELL LABORATORY   (United Kingdom)

Author keywords

Adaptation; Admixture; Hybrid zones; Introgression; QTL; Species barriers

Indexed keywords

GENETIC MATERIALS; HYBRID ZONES;

CHROMOSOMES; DATA REDUCTION; GENES; GENETIC ENGINEERING; PLANTS (BOTANY);

FORESTRY;

ADAPTATION; GENETIC VARIATION; HYBRID ZONE; HYBRIDIZATION; INTROGRESSION;

CHROMOSOMES; FORESTRY; GENES; GENETIC ENGINEERING; PLANTS;

FRAXINUS; HELIANTHUS; HELIANTHUS ANNUUS; POPULUS; QUERCUS;

EID: 0346874382     PISSN: 03781127     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.foreco.2004.05.004     Document Type: Conference Paper

References (100)

1. Anderson, E., 1949. Introgressive Hybridization. Wiley, New York.
2. Anderson E.C., Thompson E.A. A model-based method for identifying species hybrids using multilocus genetic data. Genetics. 160:2002;1217-1229
3. Arnold, M.L., 1997. Natural Hybridization and Evolution. Oxford University Press, New York.
4. Bacilieri R., Ducousso A., Petit R.J., Kremer A. Mating system and asymmetric hybridization in a mixed stand of European oaks. Evolution. 50:1996;900-908
5. Barton N.H. The role of hybridization in evolution. Mol. Ecol. 10:2001;551-568
6. Barton, N.H., Gale, K.S., 1993. Genetic analysis of hybrid zones. In: Harrison, R.G. (Ed.), Hybrid Zones and the Evolutionary Process. Oxford University Press, Oxford, pp. 13-45.
7. Barton N.H., Hewitt G.M. Analysis of hybrid zones. Annu. Rev. Ecol. Syst. 16:1985;113-148
8. Belahbib N., Pemonge M.-H., Ouassou A., Sbay H., Kremer A., Petit R.J. Frequent cytoplasmic exchanges between oak species that are not closely related: Quercus suber and Q ilex in Morocco. Mol. Ecol. 10:2001;2003-2012
9. Blouin M.S., Parsons M., Lacaille V., Lotz S. Use of microsatellite loci to classify individuals by relatedness. Mol. Ecol. 5:1996;393-401
10. Bodénès C., Joandet S., Laigret F., Kremer A. Detection of genomic regions differentiating two closely related oak species Quercus petraea (Matt) Liebl and Quercus robur L. Heredity. 78:1997;433-444
11. Bradshaw H.D., Ceulemans R., Davis J., Stettler R. Emerging model systems in plant biology: poplar (Populus) as a model forest tree. J. Plant Growth Regul. 19:2001;306-313
12. Briscoe D., Stephens J.C., O'Brien S.J. Linkage disequilibrium in admixed populations: applications in gene mapping. J. Hered. 85:1994;59-63
13. Buerkle C.A., Rieseberg L.H. Low intraspecific variation for genomic isolation between hybridizing sunflower species. Evolution. 55:2001;684-691
14. Burger W. The species concept in Quercus. Taxon. 24:1975;45-50
15. Burke J.M., Tang S., Knapp S.J., Rieseberg L.H. Genetic analysis of sunflower domestication. Genetics. 161:2002;1257-1267
16. Cervera M.-T., Storme V., Ivens B., Gusmao J., Liu B.H., Hostyn V., Slycken J.V., Montagu M.V., Boerjan W. Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics. 158:2001;787-809
17. Chandler J.M., Jan C., Beard B.H. Chromosomal differentiation among the annual Helianthus species. Syst. Bot. 11:1986;353-371
18. Churchill G.A., Doerge R.W. Empirical threshold values for quantitative trait mapping. Genetics. 138:1994;963-971
19. Darwin, C., 1859. The origin of species. In: Hutchins, R.M. (Ed.), Great Books of the Western World. Encyclopaedia Britannica, London.
20. De La Rosa R., James C.M., Tobutt K.R. Isolation and characterization of polymorphic microsatellites in olive (Olea europaea L.) and their transferability to other genera in the Oleaceae. Mol. Ecol. Notes. 2:2002;265-267
21. Eckenwalder, J.E., 1996. Systematics and evolution of Populus. In: Stettler, R.F., Bradshaw, H.D., Heilman, P.E., Hinckley, T.M. (Eds.), Biology of Populus, and Its Implications for Management and Conservation. NRC Research Press, Ottawa, pp. 7-33.
22. Etterson J.R., Shaw R.G. Constraint to Adaptive evolution in response to global warming. Science. 294:2001;151-154
23. Ferris C., King R.A., Vainola R., Hewitt G.M. Chloroplast DNA recognizes three refugial sources of European oaks and suggests independent eastern and western immigrations to Finland. Heredity. 80:1998;584-593
24. Frewen B.E., Chen T.H.H., Howe G.T., Davis J., Rohde A., Boerjan W., Bradshaw H.D. Quantitative trait loci and candidate gene mapping of bud set and bud flush in Populus. Genetics. 154:2000;837-845
25. Fukarek P. The latest results of studies of the range of Fraxinus angustifolia. Gozd. Vestn. 29:1971;193-201
26. Geburek, T.H., Heinze, B. (Eds.), 1998. Erhaltung genetischer Ressourcen im Wald-Normen, Programme, Maßnahmen. Ecomed-Verlagsgesellschaft, Landsberg.
27. Hamrick, J.L., Godt, M.J.W., 1989. Allozyme diversity in plant species. In: Brown, A.H.D., Clegg, M.T., Kahler, A.L., Weir, B.S. (Eds.), Plant Population Genetics, Breeding and Genetic Resources. Sinauer Associates, Sunderland, MA, pp. 43-63.
28. Hamrick, J.L., Nason, J.D., 2000. Gene flow in forest trees. In: Young, A., Boshier, D., Boyle, T. (Eds.), Forest Conservation Genetics - Principles and Practice. CSIRO Publishing, Collingwood, pp. 81-90.
29. Harrison R.G. Hybrid zones: windows on evolutionary processes. Oxford Surv. Evol. Biol. 7:1990;69-128
30. Harrison, R.G., Rand, D.M., 1989. Mosaic hybrid zones and the nature of species boundaries. In: Otte, D., Endler, J.A. (Eds.), Speciation and Its Consequences. Sinauer Associates, Sunderland, MA, pp. 111-133.
31. Hasegawa P.M., Bressan R.A., Zhu J.-K., Bohnert H.J. Plant cellular and molecular responses to high salinity. Annu. Rev. Plant Physiol. Plant Mol. Biol. 51:2000;463-499
32. Hedrick, P.W., 2000. Genetics of Populations. Jones and Bartlett Publishers, Sudbury, MA.
33. Heiser C.B. Hybridization between the sunflower species Helianthus annuus and H. petiolaris. Evolution. 1:1947;249-262
34. Howard D.J., Preszler R.W., Williams J., Fenchel S., Boecklen W.J. How discrete are oak species? Insights from a hybrid zone between Quercus grisea and Quercus gambellii. Evolution. 51:1997;747-755
35. Huntley, B., Birks, H., 1983. An Atlas of Past and Present Pollen Maps of Europe: 0-13 000 Years Ago. Cambridge University Press, Cambridge.
36. Hurme P., Sillanpaa M.J., Arjas E., Repo T., Savolainen O. Genetic basis of climatic adaptation in Scots pine by Bayesian quantitative trait locus analysis. Genetics. 156:2000;1309-1322
37. Isabel N., Beaulieu J., Bousquet J. Complete congruence between gene diversity estimates derived from genotypic data at enzyme and random amplified polymorphic DNA loci in black spruce. Proc. Natl. Acad. Sci. USA. 92:1995;6369-6373
38. Jeandroz S., Frascaria-Lacoste N., Bousquet J. Molecular recognition of the closely related Fraxinus excelsior and F. oxyphylla (Oleaceae) by RAPD markers. For. Genet. 3:1996;237-242
39. Jelem, H., 1974. Die Auwälder der Donau in Österreich. Mitteilungen der Forstlichen Bundesversuchsanstalt 109.
40. Kanowski, P.J., 2000. Politics, policies and the conservation of forest genetic diversity. In: Young, A., Boshier, D., Boyle, T. (Eds), Forest Conservation Genetics - Principles and Practice. CSIRO Publishing, Collingwood, pp. 275-289.
41. Kao C.-H., Zeng Z.-B., Teasdale R.D. Multiple interval mapping for quantitative trait loci. Genetics. 152:1999;1203-1216
42. Karhu A., Hurme P., Karjalainen M., Karvonen P., Karkkainen K., Neale D., Savolainen O. Do molecular markers reflect patterns of differentiation in adaptive traits of conifers? Genetics. 93:1995;215-221
43. Karp A., Edwards K.J., Bruford M., Funk S., Vosman B., Morgante M., Seberg O., Kremer A., Boursot P., Arctander P., Tautz D., Hewitt G.M. Molecular technologies for biodiversity evaluation: opportunities and challenges. Nat. Biotechnol. 15:1997;625-629
44. Karrenberg S., Edwards P.J., Kollmann J. The life history of Salicaceae living in the active zone of floodplains. Freshw. Biol. 47:2002;733-748
45. Keim P., Paige K.N., Whitham T.G., Lark K.G. Genetic analysis of an interspecific hybrid swarm of Populus: occurrence of unidirectional introgression. Genetics. 123:1989;565-575
46. Kremer A., Kleinschmit J., Cottrell J., Cundall E.P., Deans J.D., Ducousso A., Koenig A.O., Lowe A.J., Munro R.C., Petit R.J., Stephan B.R. Is there a correlation between chloroplastic and nuclear divergence, or what are the roles of history and selection on genetic diversity in European oaks? For. Ecol. Manage. 156:2002;75-87
47. Kremer A., Savill P.S., Steiner K.C. Genetics of oaks. Ann. Sci. For. 50:1993;1-472
48. Lagercrantz U., Ryman N. Genetic structure of Norway spruce (Picea abies): concordance of morphological and allozyme variation. Evolution. 44:1990;38-53
49. Lande R., Arnold S.J. The measurement of selection on correlated characters. Evolution. 37:1983;1210-1226
50. Lewontin R.C., Birch L.C. Hybridization as a source of variation for adaptation to new environments. Evolution. 20:1966;315-336
51. Lexer, C., Welch, M.E., Raymond, O., Rieseberg, L.H., 2003a. The origin of ecological divergence in Helianthus paradoxus (Asteraceae): selection on transgressive characters in a novel hybrid habitat. Evolution 57, 1989-2000.
52. Lexer, C., Welch, M.E., Raymond, O., Rieseberg, L.H., 2003b. Natural selection for salt tolerance QTLs in wild sunflower hybrids: implications for the origin of Helianthus paradoxus, a diploid hybrid species. Mol. Ecol. (special feature: genes in ecology) 12, 1225-1235.
53. Lexer, C., Randell, R.A., Rieseberg, L.H., 2003c. Experimental hybridization as a tool for studying selection in the wild. Ecology (special feature: selection experiments for ecologists - concepts, methods, and directions) 84, 1688-1699.
54. Luo Z.W., Tao S.H., Zeng Z.B. Inferring linkage disequilibrium between a polymorphic marker locus and a trait locus in natural populations. Genetics. 156:2000;457-467
55. Lynch M., Ritland K. Estimation of pairwise relatedness with molecular markers. Genetics. 152:1999;1753-1766
56. Lynch, M., Walsh, J.B., 1998. Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland, MA.
57. Martinsen G.D., Whitham T.G., Turek R.J., Keim P. Hybrid populations selectively filter gene introgression between species. Evolution. 55:2001;1325-1335
58. Mauricio R. Mapping quantitative trait loci in plants: uses and caveats for evolutionary biology. Nat. Rev. 2:2001;370-381
59. McKay J.K., Latta R.G. Adaptive population divergence: markers QTL and traits. Trends Ecol. Evol. 17:2002;285-292
60. Morand-Prieur M.E., Vedel F., Raquin C., Brachet S., Sihachakr D., Frascaria-Lacoste N. Maternal inheritance of a chloroplast microsatellite marker in controlled hybrids between Fraxinus excelsior and Fraxinus angustifolia. Mol. Ecol. 11:2002;613-617
61. Mueller-Starck, G., Schubert, R. (Eds.), 2001. Preface. In: Genetic Response of Forest Systems to Changing Environmental Conditions. Kluwer Academic Publishers, Dordrecht.
62. Orr H.A. The genetics of species differences. Trends Ecol. Evol. 16:2001;343-350
63. Petit R.J., Pineau E., Demesure B., Bacilieri R., Ducousso A., Kremer A. Chloroplast DNA footprints of postglacial recolonization by oaks. Proc. Natl. Acad. Sci. USA. 94:1997;9996-10001
64. Queller D.C., Goodnight K.F. Estimating relatedness using genetic markers. Evolution. 43:1989;258-275
65. Rajora O.P., Dancik B.P. Genetic characterization and relationships of Populus alba, P. tremula and P. x canescens and their clones. Theor. Appl. Genet. 84:1992;291-298
66. Rallo P., Dorado G., Martin A. Development of simple sequence repeats (SSRs) in olive tree (Olea europaea L.). Theor. Appl. Genet. 101:2000;984-989
67. Rieseberg L.H. Homoploid reticulate evolution in Helianthus: evidence from ribosomal genes. Am. J. Bot. 78:1991;1218-1237
68. Rieseberg L.H., Buerkle C.A. Genetic mapping in hybrid zones. Am. Nat. 159:2002;S37-S49
69. Rieseberg L.H., Carter R., Zona S. Molecular tests of the hypothesized hybrid origin of two diploid Helianthus species (Asteraceae). Evolution. 44:1990;1498-1511
70. Rieseberg L.H., Beckstrom-Sternberg S., Liston A., Arias D. Phylogenetic and systematic inferences from chloroplast DNA and isozyme variation in Helianthus sect. Helianthus. Syst. Bot. 16:1991;50-76
71. Rieseberg L.H., Baird S.J.E., Desrochers A.M. Patterns of mating in wild sunflower hybrid zones. Evolution. 52:1998;713-726
72. Rieseberg L.H., Whitton J., Gardner K. Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species. Genetics. 152:1999;713-727
73. Rieseberg L.H., Archer M.A., Wayne R.K. Transgressive segregation adaptation and speciation. Heredity. 83:1999;363-372
74. Rieseberg L.H., Widmer A., Arntz M.A., Burke J.M. Directional selection is the primary cause of phenotypic diversification. Proc. Natl. Acad. Sci. USA. 99:2002;12242-12245
75. Saintagne, C., Bodenes, C., Barrenche, T., Pot, D., Plomion, C., Kremer, A., 2004. Distribution of genomic regions differentiating oak species assessed by QTL detection. Heredity 92, 20-30.
76. Savolainen O., Hedrick P.W. Heterozygosity and fitness: no association in Scots pine. Genetics. 140:1995;755-766
77. Schilling E.E., Heiser C.B. An infrageneric classification of Helianthus section Helianthus (Compositae). Taxon. 30:1981;393-403
78. Sefc K.M., Lopes S., Mendonca D., Dos Santos M.R., Machado M.L.D., Machado A.D. Identification of microsatellite loci in olive (Olea europaea) and their characterization in Italian and Iberian olive trees. Mol. Ecol. 9:2000;1171-1173
79. Sokal, R.R., Rohlf, F.J., 1995. Biometry. The Principles and Practice of Statistics in Biological Research. State University of New York at Stony Brook, New York, NY.
80. Stebbins G.L. The role of hybridization in evolution. P. Am. Philos. Soc. 103:1959;231-251
81. Stephens J.C., Briscoe D., O'Brien S.J. Mapping by linkage disequilibrium in human populations - limits and guidelines. Am. J. Hum. Genet. 55:1994;809-824
82. Stettler, R.F., Zsuffa, L., Wu, R., 1996. The role of hybridization in the genetic manipulation of Populus. In: Young, A., Boshier, D., Boyle, T. (Eds.), Forest Conservation Genetics - Principles and Practice. CSIRO Publishing, Collingwood.
83. Tang S., Yu K.-J., Slabaugh M.B., Shintani D.K., Knapp S.J. Simple sequence repeat map of the sunflower genome. Theor. Appl. Genet. 105:2002;1124-1136
84. Tanksley S.D. Mapping polygenes. Ann. Rev. Genet. 27:1993;205-233
85. Tinner W., Lotter A.F. Central European vegetation response to abrupt climate change at 82 ka. Geology. 29:2001;551-554
86. van Valen L. Ecological species, multispecies and oaks. Taxon. 25:1976;233-239
87. Volk V.H. Is ash (Fraxinus Excelsior L.) native to central European flood plains? Forstwiss. Centralbl. 121:2002;128-137
88. Weir, B.S., 1996. Genetic Data Analysis II. Sinauer Associates, Sunderland, MA.
89. Welch M.E., Rieseberg L.H. Habitat divergence between a homoploid hybrid sunflower species Helianthus paradoxus (Asteraceae) and its progenitors. Am. J. Bot. 89:2002;472-479
90. Whitham T.G. Plant hybrid zones as sinks for pests. Science. 244:1989;1490-1493
91. Whitham T.G., Martinsen G.D., Floate K.D., Dungey H.S., Pott B.M., Keim P. Plant hybrid zones affect biodiversity: tools for a genetic-based understanding of community structure. Ecology. 80:1999;416-428
92. Whittemore A.T., Schaal B.A. Interspecific gene flow in sympatric oaks. Proc. Natl. Acad. Sci. USA. 88:1991;2540-2544
93. Williams J.G.K., Kubelik A.R., Kenneth J.L., Rafalski J.A., Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl. Acid Res. 18:1990;6531-6535
94. Williams J.H., Arnold M.L. Sources of genetic structure in the woody perennial Betula occidentalis. Int. J. Plant Sci. 162:2001;1097-1109
95. Wright, J.W., 1976. Introduction to Forest Genetics. Academic Press, San Diego, CA.
96. Wu R.L., Zeng Z.B. Joint linkage and linkage disequilibrium mapping in natural populations. Genetics. 157:2001;899-909
97. Wullschleger S.D., Jansson S., Taylor G. Genomics and forest biology: Populus emerges as the perennial favorite. The Plant Cell. 14:2002;2651-2655
98. Yeo A. Molecular biology of salt tolerance in the context of whole-plant physiology. J. Exp. Bot. 49:1998;915-929
99. Zeng Z.-B. Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc. Natl. Acad. Sci. USA. 90:1993;10972-10976
100. Zeng Z.-B. Precision mapping of quantitative trait loci. Genetics. 136:1994;1457-1468