Salt Bridges Do Not Stabilize Polyproline II Helices

Biochemistry

Volumn 42, Issue 49, 2003, Pages 14690-14695

  Whittington, Shelly J ^a   Creamer, Trevor P ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHARGED RESIDUES;

COMPUTER SIMULATION; POLYMERS; PROTEINS; SPECTROSCOPIC ANALYSIS;

BIOCHEMISTRY;

POLYPROLINE; PROLINE; PROLINE DERIVATIVE; SODIUM CHLORIDE; UNCLASSIFIED DRUG;

ARTICLE; CIRCULAR DICHROISM; COMPUTER SIMULATION; PH; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

CIRCULAR DICHROISM; COMPUTER SIMULATION; GLUTAMIC ACID; HYDROGEN BONDING; LYSINE; MODELS, MOLECULAR; MONTE CARLO METHOD; OLIGOPEPTIDES; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; SALTS;

EID: 0346850577     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi035565x     Document Type: Article

References (38)

1. Williamson, M. P. (1994) Biochem. J. 297, 249-260.
2. Kay, B. K., Williamson, M. P., and Sudol, M. (2000) FASEB J. 14, 231-241.
3. Jardetzky, T. S., Brown, J. H., Gorga, J. C., Stern, L. J., Urban, R. G., Strominger, J. L., and Wiley, D. C. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 734-738.
4. Siligardi, G., and Drake, A. F. (1995) Biopolymers 37, 281-292.
5. Krimm, S., and Tiffany, M. L. (1974) Isr. J. Chem. 12, 189-200.
6. Tiffany, M. L., and Krimm, S. (1968) Biopolymers 6, 1379-1382.
7. Tiffany, M. L., and Krimm, S. (1968) Biopolymers 6, 1767-1770.
8. Woody, R. W. (1992) Adv. Biophys. Chem. 2, 37-79.
9. Dukor, R. K., and Keiderling, T. A. (1991) Biopolymers 31, 1747-1761.
10. Wilson, G., Hecht, L., and Barron, L. D. (1996) Biochemistry 35, 12518-12525.
11. Drake, A. F., Siligardi, G., and Gibbons, W. A. (1988) Biophys. Chem. 31, 143-146.
12. Rucker, A. L., and Creamer, T. P. (2002) Protein Sci. 11, 980-985.
13. Creamer, T. P., and Campbell, M. N. (2002) Adv. Protein Chem. 62, 263-282.
14. Shi, Z., Olson, C. A., Rose, G. D., Baldwin, R. L., and Kallenbach, N. R. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 9190-9195.
15. Shi, Z., Woody, R. W., and Kallenbach, N. R. (2002) Adv. Protein Chem. 62, 163-240.
16. Pappu, R. V., and Rose, G. D. (2002) Protein Sci. 11, 2437-2455.
17. Eker, F., Cao, X., Nafie, L., Huang, Q., and Schweitzer-Stenner, R. (2003) J. Phys. Chem. B 107, 358-365.
18. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950.
19. Lyu, P. C., Gans, P. J., and Kallenbach, N. R. (1992) J. Mol. Biol. 223, 343-350.
20. Marqusee, S., and Baldwin, R. L. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 8898-8902.
21. Merutka, G., and Stellwagen, E. (1991) Biochemistry 30, 1591-1594.
22. Blasie, C. A., and Berg, J. M. (1997) Biochemistry 36, 6218-6222.
23. Kelly, M., Chellgren, B. W., Rucker, A. L., Troutman, J. M., Fried, M. G., Miller, A.-F., and Creamer, T. P. (2001) Biochemistry 40, 14376-14383.
24. Rucker, A. L., Pager, C. T., Campbell, M. N., Qualls, J. E., and Creamer, T. P. (2003) Proteins 53, 68-75.
25. Helbecque, N., and Loucheux-Lefebvre, M. H. (1982) Int. J. Pept. Protein Res. 19, 94-101.
26. Creamer, T. P. (1998) Proteins 33, 218-226.
27. CRC Handbook of Biochemistry and Molecular Biology (1976) 3rd ed., CRC Press, Cleveland, OH.
28. Liu, Y., and Bolen, D. W. (1995) Biochemistry 34, 12884-12891.
29. Huyghues-Despointes, B. M. P., Scholtz, J. M., and Baldwin, R. L. (1993) Protein Sci. 2, 80-85.
30. Scholtz, J. M., Qian, H., Robbins, V. H., and Baldwin, R. L. (1993) Biochemistry 32, 9668-9676,
31. Brandts, J. F., and Kaplan, L. J. (1973) Biochemistry 12, 2011-2024.
32. Chakrabartty, A., Kortemme, T., Padmanabhan, S., and Baldwin, R. L. (1993) Biochemistry 32, 5560-5565.
33. MacArthur, M. W., and Thornton, J. M. (1991) J. Mol. Biol. 218, 397-412.
34. Creamer, T. P., Srinivasan, R., and Rose, G. D. (1995) Biochemistry 34, 16245-16250.
35. Metropolis, N., Rosenbluth, A. W., Rosenbluth, M. N., Teller, A. H., and Teller, E. (1953) J. Chem. Phys. 21, 1087-1092.
36. Woody, R. W. (1996) in Circular dichroism and the conformational analysis of biomolecules (Fasman, G. D., Ed.) pp 25-67, Plenum Press, New York.
37. Ding, L., Chen, K., Santini, P. A., Shi, Z., and Kallenbach, N. R. (2003) J. Am. Chem. Soc. 125, 8092-8093.
38. Ferreon, J. C., and Hilser, V. J. (2003) Protein Sci. 12, 447-457.