-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0032952229
-
Pfam 3.1: 1313 Multiple alignments and profile HMMs match the majority of proteins
-
Bateman, A., Birney, E., Durbin, R., Eddy, S.R., Finn, R.D., and Sonnhammer, E.L. 1999. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res. 27: 260-262.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 260-262
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Finn, R.D.5
Sonnhammer, E.L.6
-
4
-
-
0030760314
-
Crystal structure of human BPI and two bound phospholipids at 2.4 Å resolution
-
Beamer, L.J., Carroll, S.F., and Eisenberg, D. 1997. Crystal structure of human BPI and two bound phospholipids at 2.4 Å resolution. Science 276: 1861-1864.
-
(1997)
Science
, vol.276
, pp. 1861-1864
-
-
Beamer, L.J.1
Carroll, S.F.2
Eisenberg, D.3
-
5
-
-
0035443118
-
Glycoside hydrolases and glycosyltransferases: Families and functional modules
-
Bourne, Y. and Henrissat, B. 2001. Glycoside hydrolases and glycosyltransferases: Families and functional modules. Curr. Opin. Struct. Biol. 11: 593-600.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 593-600
-
-
Bourne, Y.1
Henrissat, B.2
-
6
-
-
0014693695
-
A possible three-dimensional structure of bovine α-lactalbumin based on that of hen's egg-white lysozyme
-
Browne, W.J., North, A.C., Phillips, D.C., Brew, K., Vanaman, T.C., and Hill, R.L. 1969. A possible three-dimensional structure of bovine α-lactalbumin based on that of hen's egg-white lysozyme. J. Mol. Biol. 42: 65-86
-
(1969)
J. Mol. Biol.
, vol.42
, pp. 65-86
-
-
Browne, W.J.1
North, A.C.2
Phillips, D.C.3
Brew, K.4
Vanaman, T.C.5
Hill, R.L.6
-
7
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
C.C.P., No. 4, 1994. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D50: 760.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 760
-
-
-
8
-
-
0032566284
-
Snapshots along an enzymatic reaction coordinate: Analysis of a retaining β-glycoside hydrolase
-
Davies, G.J., Mackenzie, L., Varrot, A., Dauter, M., Brzozowski, A.M., Schulein, M., and Withers, S.G. 1998. Snapshots along an enzymatic reaction coordinate: Analysis of a retaining β-glycoside hydrolase. Biochemistry 37: 11707-11713.
-
(1998)
Biochemistry
, vol.37
, pp. 11707-11713
-
-
Davies, G.J.1
Mackenzie, L.2
Varrot, A.3
Dauter, M.4
Brzozowski, A.M.5
Schulein, M.6
Withers, S.G.7
-
9
-
-
0034657160
-
Structure and function of Humicola insolens family 6 cellulases: Structure of the endoglucanase, Cel6B, at 1.6 Å resolution
-
Davies, G.J., Brzozowski, A.M., Dauter, M., Varrot, A., and Schulein, M. 2000. Structure and function of Humicola insolens family 6 cellulases: Structure of the endoglucanase, Cel6B, at 1.6 Å resolution. Biochem. J. 348 Pt. 1: 201-207.
-
(2000)
Biochem. J.
, vol.348
, Issue.PART 1
, pp. 201-207
-
-
Davies, G.J.1
Brzozowski, A.M.2
Dauter, M.3
Varrot, A.4
Schulein, M.5
-
10
-
-
0034660322
-
Protein function in the post-genomic era
-
Eisenberg, D., Marcotte, E.M., Xenarios, I., and Yeates, T.O. 2000. Protein function in the post-genomic era. Nature 405: 823-826.
-
(2000)
Nature
, vol.405
, pp. 823-826
-
-
Eisenberg, D.1
Marcotte, E.M.2
Xenarios, I.3
Yeates, T.O.4
-
11
-
-
0028845991
-
Crystal structure of concanavalin B at 1.65 Å resolution. An "inactivated" chitinase from seeds of Canavalia ensiformis
-
Hennig, M., Jansonius, J.N., Terwisscha van Scheltinga, A.C., Dijkstra, B.W., and Schlesier, B. 1995. Crystal structure of concanavalin B at 1.65 Å resolution. An "inactivated" chitinase from seeds of Canavalia ensiformis. J. Mol. Biol. 254: 237-246.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 237-246
-
-
Hennig, M.1
Jansonius, J.N.2
Terwisscha Van Scheltinga, A.C.3
Dijkstra, B.W.4
Schlesier, B.5
-
12
-
-
0030733350
-
Structural and sequence-based classification of glycoside hydrolases
-
Henrissat, B. and Davies, G. 1997. Structural and sequence-based classification of glycoside hydrolases. Curr. Opin. Struct. Biol. 7: 637-644.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 637-644
-
-
Henrissat, B.1
Davies, G.2
-
13
-
-
0003410183
-
-
Published for the International Union of Biochemistry and Molecular Biology, Academic Press, San Diego, CA
-
International Union of Biochemistry and Molecular Biology. Nomenclature Committee., and Webb, E.C. 1992. Enzyme nomenclature 1992: Recommendations of the nomenclature committee of the international union of biochemistry and molecular biology on the nomenclature and classification of enzymes, pp. xiii, 862. Published for the International Union of Biochemistry and Molecular Biology, Academic Press, San Diego, CA.
-
(1992)
Enzyme Nomenclature 1992: Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes
-
-
Webb, E.C.1
-
14
-
-
0037370478
-
Bioinformatics in the post-sequence era
-
Kanehisa, M. and Bork, P. 2003. Bioinformatics in the post-sequence era. Nat. Genet. 33: 305-310.
-
(2003)
Nat. Genet.
, vol.33
, pp. 305-310
-
-
Kanehisa, M.1
Bork, P.2
-
15
-
-
0034674059
-
The 1.7 Å crystal structure of BPI: A study of how two dissimilar amino acid sequences can adopt the same fold
-
Kleiger, G., Beamer, L.J., Grothe, R., Mallick, P., and Eisenberg, D. 2000. The 1.7 Å crystal structure of BPI: A study of how two dissimilar amino acid sequences can adopt the same fold. J. Mol. Biol. 299: 1019-1034.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1019-1034
-
-
Kleiger, G.1
Beamer, L.J.2
Grothe, R.3
Mallick, P.4
Eisenberg, D.5
-
16
-
-
0035807864
-
3D structure and significance of the GPhiXXG helix packing motif in tetramers of the E1β subunit of pyruvate dehydrogenase from the archeon Pyrobaculum aerophilum
-
Kleiger, G., Perry, J., and Eisenberg, D. 2001. 3D structure and significance of the GPhiXXG helix packing motif in tetramers of the E1β subunit of pyruvate dehydrogenase from the archeon Pyrobaculum aerophilum. Biochemistry 40: 14484-14492.
-
(2001)
Biochemistry
, vol.40
, pp. 14484-14492
-
-
Kleiger, G.1
Perry, J.2
Eisenberg, D.3
-
17
-
-
0034646354
-
Selecting protein targets for structural genomics of Pyrobaculum aerophilum: Validating automated fold assignment methods by using binary hypothesis testing
-
Mallick, P., Goodwill, K.E., Fitz-Gibbon, S., Miller, J.H., and Eisenberg, D. 2000. Selecting protein targets for structural genomics of Pyrobaculum aerophilum: Validating automated fold assignment methods by using binary hypothesis testing. Proc. Natl. Acad. Sci. 97: 2450-2455.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 2450-2455
-
-
Mallick, P.1
Goodwill, K.E.2
Fitz-Gibbon, S.3
Miller, J.H.4
Eisenberg, D.5
-
18
-
-
0037058927
-
The directional atomic solvation energy: An atom-based potential for the assignment of protein sequences to known folds
-
Mallick, P., Weiss, R., and Eisenberg, D. 2002. The directional atomic solvation energy: An atom-based potential for the assignment of protein sequences to known folds. Proc. Natl. Acad. Sci. 99: 16041-16046.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 16041-16046
-
-
Mallick, P.1
Weiss, R.2
Eisenberg, D.3
-
19
-
-
0035542934
-
The (βα)(8) glycosidases: Sequence and structure analyses suggest distant evolutionary relationships
-
Nagano, N., Porter, C.T., and Thornton, J.M. 2001. The (βα)(8) glycosidases: Sequence and structure analyses suggest distant evolutionary relationships. Protein Eng. 14: 845-855.
-
(2001)
Protein Eng
, vol.14
, pp. 845-855
-
-
Nagano, N.1
Porter, C.T.2
Thornton, J.M.3
-
20
-
-
0036384350
-
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
-
Nagano, N., Orengo, C.A., and Thornton, J.M. 2002. One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions. J. Mol. Biol. 321: 741-765.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 741-765
-
-
Nagano, N.1
Orengo, C.A.2
Thornton, J.M.3
-
21
-
-
0030777303
-
CATH - A hierarchic classification of protein domain structures
-
Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B., and Thornton, J.M. 1997. CATH - a hierarchic classification of protein domain structures. Structure 5: 1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
22
-
-
0029137828
-
The structure and evolution of α/β barrel proteins
-
Reardon, D. and Farber, G.K. 1995. The structure and evolution of α/β barrel proteins. FASEB J. 9: 497-503.
-
(1995)
FASEB J.
, vol.9
, pp. 497-503
-
-
Reardon, D.1
Farber, G.K.2
-
23
-
-
0025317502
-
Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming
-
Sali, A. and Blundell, T.L. 1990. Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. J. Mol. Biol. 212: 403-428.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 403-428
-
-
Sali, A.1
Blundell, T.L.2
|