-
1
-
-
0000668407
-
Theory of the phase transition between helix and random coil in polypeptide chains
-
Zimm BH, Bragg JK. Theory of the phase transition between helix and random coil in polypeptide chains. J Chem Phys 1959;31:476-85.
-
(1959)
J Chem Phys
, vol.31
, pp. 476-485
-
-
Zimm, B.H.1
Bragg, J.K.2
-
3
-
-
0001193711
-
The effects of internal constraints on the configurations of chain molecules
-
Chan HS, Dill KA. The effects of internal constraints on the configurations of chain molecules. J Chem Phys 1990;92:3118-35.
-
(1990)
J Chem Phys
, vol.92
, pp. 3118-3135
-
-
Chan, H.S.1
Dill, K.A.2
-
4
-
-
0025906282
-
Polymer principles in protein structure and stability
-
Chan HS, Dill KA. Polymer principles in protein structure and stability. Annu Rev Biophys Biophys Chem 1991;20:447-90.
-
(1991)
Annu Rev Biophys Biophys Chem
, vol.20
, pp. 447-490
-
-
Chan, H.S.1
Dill, K.A.2
-
5
-
-
33744825406
-
Sequence space soup of proteins and copolymers
-
Chan HS, Dill KA. Sequence space soup of proteins and copolymers. J Chem Phys 1991;95:3775-87.
-
(1991)
J Chem Phys
, vol.95
, pp. 3775-3787
-
-
Chan, H.S.1
Dill, K.A.2
-
6
-
-
0000868733
-
The protein folding problem
-
Chan HS, Dill KA. The protein folding problem. Phys Today 1993;46: 24-32.
-
(1993)
Phys Today
, vol.46
, pp. 24-32
-
-
Chan, H.S.1
Dill, K.A.2
-
8
-
-
36549094651
-
Interchain loops in polymers-effects of excluded volume
-
Chan HS, Dill KA. Interchain loops in polymers-effects of excluded volume. J Chem Phys 1989;90:492-509.
-
(1989)
J Chem Phys
, vol.90
, pp. 492-509
-
-
Chan, H.S.1
Dill, K.A.2
-
9
-
-
0026519315
-
A lattice model for protein-structure predicton at low resolution
-
Hinds DA, Levitt M. A lattice model for protein-structure predicton at low resolution. Proc Natl Acad Sci USA 1992;89:2536-40.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 2536-2540
-
-
Hinds, D.A.1
Levitt, M.2
-
10
-
-
0002698766
-
Modeling protein folding: The beauty and power of simplicity
-
Shakhnovich EI. Modeling protein folding: the beauty and power of simplicity. Fold Des 1996;1:R50-4.
-
(1996)
Fold Des
, vol.1
-
-
Shakhnovich, E.I.1
-
12
-
-
0031302932
-
High coordination lattice models of protein structure, dynamics and thermodynamics
-
Kolinski A, Skolnick J. High coordination lattice models of protein structure, dynamics and thermodynamics. Acta Biochim Pol 1997;44: 389-422.
-
(1997)
Acta Biochim Pol
, vol.44
, pp. 389-422
-
-
Kolinski, A.1
Skolnick, J.2
-
14
-
-
0012652364
-
A combinatorial algorithm for effective generation of long maximally compact lattice chains
-
Ramakrishnan R, Pekny JF, Caruthers JM. A combinatorial algorithm for effective generation of long maximally compact lattice chains. J Chem Phys 1995;103:7592-604.
-
(1995)
J Chem Phys
, vol.103
, pp. 7592-7604
-
-
Ramakrishnan, R.1
Pekny, J.F.2
Caruthers, J.M.3
-
15
-
-
0028058107
-
Stabilization of intermediate density states in globular- proteins by homogenous intramolecular attractive interactions
-
Bahar I, Jernigan RL. Stabilization of intermediate density states in globular-proteins by homogenous intramolecular attractive interactions. Biophys J 1994;66:454-66.
-
(1994)
Biophys J
, vol.66
, pp. 454-466
-
-
Bahar, I.1
Jernigan, R.L.2
-
16
-
-
0028085228
-
Cooperative structural transitions induced by nonhomogenous intramolecular interactions in compact globular proteins
-
Bahar I, Jernigan RL. Cooperative structural transitions induced by nonhomogenous intramolecular interactions in compact globular proteins. Biophys J 1994;66:467-81.
-
(1994)
Biophys J
, vol.66
, pp. 467-481
-
-
Bahar, I.1
Jernigan, R.L.2
-
17
-
-
0025319917
-
Conformations of folded proteins in restricted spaces
-
Covell DG, Jernigan RL. Conformations of folded proteins in restricted spaces. Biochemistry 1990;29:3287-94.
-
(1990)
Biochemistry
, vol.29
, pp. 3287-3294
-
-
Covell, D.G.1
Jernigan, R.L.2
-
18
-
-
36549097257
-
Enumeration of all compact conformations of copolymers with random sequence of links
-
Shakhnovich E, Gutin A. Enumeration of all compact conformations of copolymers with random sequence of links. J Chem Phys 1990;93: 5967-71.
-
(1990)
J Chem Phys
, vol.93
, pp. 5967-5971
-
-
Shakhnovich, E.1
Gutin, A.2
-
19
-
-
0001942492
-
Phenomenological renormalization of the self avoiding walk in 2 dimensions
-
Derrida B. Phenomenological renormalization of the self avoiding walk in 2 dimensions. J Phys A 1981;14:L5-L9.
-
(1981)
J Phys A
, vol.14
-
-
Derrida, B.1
-
20
-
-
0004560759
-
Asymptotic distribution for self-avoiding walks constrained to s tips, cylinders, and tubes
-
Klein DJ. Asymptotic distribution for self-avoiding walks constrained to stips, cylinders, and tubes. J Stat Phys 1980;23:561-86.
-
(1980)
J Stat Phys
, vol.23
, pp. 561-586
-
-
Klein, D.J.1
-
21
-
-
36149040888
-
Compact self-avoiding circuits on two dimensional lattices
-
Schmalz TG, Hite GE, Klein DJ. Compact self-avoiding circuits on two dimensional lattices. J Phys A 1984;17:445-53.
-
(1984)
J Phys A
, vol.17
, pp. 445-453
-
-
Schmalz, T.G.1
Hite, G.E.2
Klein, D.J.3
-
22
-
-
0031250872
-
Efficient method to count and generate compact protein lattice conformations
-
Kloczkowski A, Jernigan RL. Efficient method to count and generate compact protein lattice conformations. Macromolecules 1997;30: 6691-4.
-
(1997)
Macromolecules
, vol.30
, pp. 6691-6694
-
-
Kloczkowski, A.1
Jernigan, R.L.2
-
23
-
-
0000686163
-
Computer generation and enumeration of compact self-avoiding walks within simple geometries on lattices
-
Kloczkowski A, Jernigan RL. Computer generation and enumeration of compact self-avoiding walks within simple geometries on lattices. Comput Theor Polym Sci 1997;7:163-73.
-
(1997)
Comput Theor Polym Sci
, vol.7
, pp. 163-173
-
-
Kloczkowski, A.1
Jernigan, R.L.2
-
24
-
-
0342269221
-
Transfer matrix method for enumeration and generation of compact self-avoiding walks. II. Cubic lattice
-
Kloczkowski A, Jernigan RL. Transfer matrix method for enumeration and generation of compact self-avoiding walks. II. Cubic lattice. J Chem Phys 1998;109:5147-59.
-
(1998)
J Chem Phys
, vol.109
, pp. 5147-5159
-
-
Kloczkowski, A.1
Jernigan, R.L.2
-
25
-
-
0000763203
-
Transfer matrix method for enumeration ansi generation of compact self-avoiding walks. I. Square lattices
-
Kloczkowski A, Jernigan RL. Transfer matrix method for enumeration ansi generation of compact self-avoiding walks. I. Square lattices. J Chem Phys 1998;109:5134-46.
-
(1998)
J Chem Phys
, vol.109
, pp. 5134-5146
-
-
Kloczkowski, A.1
Jernigan, R.L.2
-
26
-
-
0035892853
-
Enumeration of compact self-avoiding walks
-
Jensen I. Enumeration of compact self-avoiding walks. Comput Phys Commun 2001;142:109-13.
-
(2001)
Comput Phys Commun
, vol.142
, pp. 109-113
-
-
Jensen, I.1
-
29
-
-
0037110580
-
Designability of protein structures: A lattice-model study using the Miyazawa-Jemigan matrix
-
Li H, Tang C, Wingreen NS. Designability of protein structures: a lattice-model study using the Miyazawa-Jemigan matrix. Prot: Struct Funct Genet 2002;49:403-12.
-
(2002)
Prot: Struct Funct Genet
, vol.49
, pp. 403-412
-
-
Li, H.1
Tang, C.2
Wingreen, N.S.3
-
30
-
-
0000713579
-
Designability, thermodynamic stability, and dynamics in protein folding: A lattice model study
-
Melin R, Li H, Wingreen NS, Tang C. Designability, thermodynamic stability, and dynamics in protein folding: a lattice model study. J Chem Phys 1999;110:1252-62.
-
(1999)
J Chem Phys
, vol.110
, pp. 1252-1262
-
-
Melin, R.1
Li, H.2
Wingreen, N.S.3
Tang, C.4
-
31
-
-
0036606863
-
Emergence of highly designable protein-backbone conformations in an off-lattice model
-
Miller J, Zeng C, Wingreen NS, Tang C. Emergence of highly designable protein-backbone conformations in an off-lattice model. Prot: Struct Funct Genet 2002;47:506-12.
-
(2002)
Prot: Struct Funct Genet
, vol.47
, pp. 506-512
-
-
Miller, J.1
Zeng, C.2
Wingreen, N.S.3
Tang, C.4
-
32
-
-
0034322834
-
Symmetry and designability for lattice protein models
-
Wang TR, Miller J, Wingreen NS, Tang C, Dill KA. Symmetry and designability for lattice protein models. J Chem Phys 2000;113: 8329-36.
-
(2000)
J Chem Phys
, vol.113
, pp. 8329-8336
-
-
Wang, T.R.1
Miller, J.2
Wingreen, N.S.3
Tang, C.4
Dill, K.A.5
-
33
-
-
0029772552
-
Emergence of preferred structures in a simple model of protein folding
-
Li H, Helling R, Tang C, Wingreen N. Emergence of preferred structures in a simple model of protein folding. Science 1996;273: 666-9.
-
(1996)
Science
, vol.273
, pp. 666-669
-
-
Li, H.1
Helling, R.2
Tang, C.3
Wingreen, N.4
-
35
-
-
0013864421
-
A general treatment of helix-coil equilibria in macromolecular systems
-
Flory PJ, Miller WG. A general treatment of helix-coil equilibria in macromolecular systems. J Mol Biol 1966;15:284-97.
-
(1966)
J Mol Biol
, vol.15
, pp. 284-297
-
-
Flory, P.J.1
Miller, W.G.2
-
37
-
-
0032190305
-
Analytical shape computing of macromolecules I: Molecular area and volume through alpha shape
-
Liang J, Edelsbrunner H, Fu P, Sudhakar PV, Subramaniam S. Analytical shape computing of macromolecules I: molecular area and volume through alpha shape. Proteins 1998;33:1-17.
-
(1998)
Proteins
, vol.33
, pp. 1-17
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
38
-
-
0031687653
-
Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design
-
Liang J, Edelsbrunner H, Woodward C. Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design. Protein Sci 1998;7:1884-97.
-
(1998)
Protein Sci
, vol.7
, pp. 1884-1897
-
-
Liang, J.1
Edelsbrunner, H.2
Woodward, C.3
-
39
-
-
0032189626
-
Analytical shape computing of macromolecules II: Identification and computation of inaccessible cavities inside proteins
-
Liang J, Edelsbrunner H, Fu P, Sudhakar PV, Subramaniam S. Analytical shape computing of macromolecules II: identification and computation of inaccessible cavities inside proteins. Proteins 1998;33: 18-29.
-
(1998)
Proteins
, vol.33
, pp. 18-29
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
40
-
-
0037103826
-
Statistical geometry of packing defects of lattice chain polymer from enumeration and sequential Monte Carlo method
-
Liang J, Zhang JF, Chen R. Statistical geometry of packing defects of lattice chain polymer from enumeration and sequential Monte Carlo method. J Chem Phys 2002;117:3511-21.
-
(2002)
J Chem Phys
, vol.117
, pp. 3511-3521
-
-
Liang, J.1
Zhang, J.F.2
Chen, R.3
-
41
-
-
0034901412
-
Are proteins well-packed?
-
Liang J, Dill KA. Are proteins well-packed? Biophys J 2001;81: 751-66.
-
(2001)
Biophys J
, vol.81
, pp. 751-766
-
-
Liang, J.1
Dill, K.A.2
-
42
-
-
0002052671
-
On the definition and the construction of pockets in macromolecules
-
Edelsbrunner H, Facello M, Liang J. On the definition and the construction of pockets in macromolecules. Dis Appl Math 1998;88: 83-102.
-
(1998)
Dis Appl Math
, vol.88
, pp. 83-102
-
-
Edelsbrunner, H.1
Facello, M.2
Liang, J.3
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