메뉴 건너뛰기




Volumn 39, Issue 6, 2003, Pages 1160-1171

Complex gene structure of the form II RUBISCO in the dinoflagellate Prorocentrum minimum (Dinophyceae)

Author keywords

Dinoflagellate; Duplication; Form II RUBISCO; Gene structure; Polyprotein; Prorocentrum minimum; Tandem repeats

Indexed keywords

DINOFLAGELLATE; GENETICS;

EID: 0346361520     PISSN: 00223646     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0022-3646.2003.03-055.x     Document Type: Article
Times cited : (56)

References (41)
  • 1
    • 0033834347 scopus 로고    scopus 로고
    • Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum
    • Barbrook, A. C. & Howe, C. J. 2000. Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum. Mol. Gen. Genet. 263:152-8.
    • (2000) Mol. Gen. Genet. , vol.263 , pp. 152-158
    • Barbrook, A.C.1    Howe, C.J.2
  • 2
    • 0025135575 scopus 로고
    • Eight small subunits of Euglena Ribulose 1-5 bisphosphate carboxylase/oxygenase are translated from a large mRNA as a polyprotein
    • Chan, R. L., Keller, M., Canaday, J., Weil, J.-H. & Imbault, P. 1990. Eight small subunits of Euglena Ribulose 1-5 bisphosphate carboxylase/ oxygenase are translated from a large mRNA as a polyprotein. EMBO J. 9:333-8.
    • (1990) EMBO J. , vol.9 , pp. 333-338
    • Chan, R.L.1    Keller, M.2    Canaday, J.3    Weil, J.-H.4    Imbault, P.5
  • 3
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of Rubisco genes in eubacteria and plastids
    • Delwiche, C. F. & Palmer, J. D. 1996. Rampant horizontal transfer and duplication of Rubisco genes in eubacteria and plastids. Mol. Biol. Evol. 13:873-82.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 4
    • 0034615630 scopus 로고    scopus 로고
    • Determination of heterogeneous transcription start points of two c-myc genes from the common carp (Cyprinus carpio)
    • Futami, K., Komiya, T., Zhang, H. & Okamoto, N. 2000. Determination of heterogeneous transcription start points of two c-myc genes from the common carp (Cyprinus carpio). Gene 245:43-7.
    • (2000) Gene , vol.245 , pp. 43-47
    • Futami, K.1    Komiya, T.2    Zhang, H.3    Okamoto, N.4
  • 6
    • 0020349294 scopus 로고
    • Purification and sequencing of cyanoge bromide fragments from ribulose-bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum
    • Hartman, F. C., Stringer, C. D., Omnaas, J., Donnelly, M. I. & Fraij, B. 1982. Purification and sequencing of cyanoge bromide fragments from ribulose-bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum. Arch. Biochem. Biophys. 219:422-37.
    • (1982) Arch. Biochem. Biophys. , vol.219 , pp. 422-437
    • Hartman, F.C.1    Stringer, C.D.2    Omnaas, J.3    Donnelly, M.I.4    Fraij, B.5
  • 7
    • 0037047078 scopus 로고    scopus 로고
    • Second- and third-hand chloroplasts in dinoflagellates: Phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont
    • Ishida, K.-I. & Green, B. R. 2002. Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont. Proc. Natl. Acad. Sci. USA 99:9294-9.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9294-9299
    • Ishida, K.-I.1    Green, B.R.2
  • 8
    • 0000808158 scopus 로고
    • Chloroplastic precursors and their transport across the envelop membranes
    • Keegstra, K. & Olsen, L. J. 1989. Chloroplastic precursors and their transport across the envelop membranes. Annu. Rev. Plant Physiol. Plant Mol. Biol. 40:471-501.
    • (1989) Annu. Rev. Plant Physiol. Plant Mol. Biol. , vol.40 , pp. 471-501
    • Keegstra, K.1    Olsen, L.J.2
  • 9
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-20.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 10
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of head of bacteriophage T4
    • Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of head of bacteriophage T4. Nature 227:680-5.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 11
    • 0030832064 scopus 로고    scopus 로고
    • Structure and organization of the peridinin-chlorophyll a-binding protein gene in Gonyaulax polyedra
    • Le, Q. H., Markovic, P., Hastings, J. W., Jovine, R. V. M. & Morse, D. 1997. Structure and organization of the peridinin-chlorophyll a-binding protein gene in Gonyaulax polyedra. Mol. Gen. Genet. 255:595-604.
    • (1997) Mol. Gen. Genet. , vol.255 , pp. 595-604
    • Le, Q.H.1    Markovic, P.2    Hastings, J.W.3    Jovine, R.V.M.4    Morse, D.5
  • 12
    • 0027516422 scopus 로고
    • Molecular cloning and genomic organization of a gene for luciferin-binding protein from the dinoflagellate Gonyaulax polyedra
    • Lee, D.-H., Mittag, M., Sczelan, S., Morse, D. & Hastings, J. W. 1993. Molecular cloning and genomic organization of a gene for luciferin-binding protein from the dinoflagellate Gonyaulax polyedra. J. Biol. Chem. 268:8842-50.
    • (1993) J. Biol. Chem. , vol.268 , pp. 8842-8850
    • Lee, D.-H.1    Mittag, M.2    Sczelan, S.3    Morse, D.4    Hastings, J.W.5
  • 13
    • 0031907265 scopus 로고    scopus 로고
    • The structure and organization of the luciferase gene in the photosynthetic dinoflagellate Gonyaulax polyedra
    • Li, L. & Hastings, J. W. 1998. The structure and organization of the luciferase gene in the photosynthetic dinoflagellate Gonyaulax polyedra. Plant Mol. Biol. 36:275-84.
    • (1998) Plant Mol. Biol. , vol.36 , pp. 275-284
    • Li, L.1    Hastings, J.W.2
  • 14
    • 0030738723 scopus 로고    scopus 로고
    • Three functional domains in a single polypeptide chain
    • Li, L., Hong, R. & Hastings, J. W. 1997. Three functional domains in a single polypeptide chain. Proc. Natl. Acad. Sci. USA 94: 8954-8.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 8954-8958
    • Li, L.1    Hong, R.2    Hastings, J.W.3
  • 15
    • 0027951112 scopus 로고
    • Detection of proliferating cell nuclear antigen (PCNA) analog in four species of marine phytoplankton
    • Lin, S., Chang, J. & Carpenter, E. J. 1994. Detection of proliferating cell nuclear antigen (PCNA) analog in four species of marine phytoplankton. J. Phycol. 30:449-56.
    • (1994) J. Phycol. , vol.30 , pp. 449-456
    • Lin, S.1    Chang, J.2    Carpenter, E.J.3
  • 16
    • 0036191522 scopus 로고    scopus 로고
    • Molecular cloning and expression of the proliferating cell nuclear antigen gene from the coccolithorid Pleurochrysis carterae (Haptophyceae)
    • Lin, S. & Corstjens, P. L. A. M. 2002. Molecular cloning and expression of the proliferating cell nuclear antigen gene from the coccolithorid Pleurochrysis carterae (Haptophyceae). J. Phycol. 38:1-10.
    • (2002) J. Phycol. , vol.38 , pp. 1-10
    • Lin, S.1    Corstjens, P.L.A.M.2
  • 17
    • 0036303481 scopus 로고    scopus 로고
    • Widespread and extensive editing of mitochondrial mRNAs in dinoflagellates
    • Lin, S., Zhang, H., Spencer, D. F., Norman, J. E. & Gray, M. W. 2002. Widespread and extensive editing of mitochondrial mRNAs in dinoflagellates. J. Mol. Biol. 320:727-39.
    • (2002) J. Mol. Biol. , vol.320 , pp. 727-739
    • Lin, S.1    Zhang, H.2    Spencer, D.F.3    Norman, J.E.4    Gray, M.W.5
  • 18
    • 0028409697 scopus 로고
    • Expression and genomic organization of a dinoflagellate gene family
    • Machabee, S., Wall, L. & Morse, D. 1994. Expression and genomic organization of a dinoflagellate gene family. Plant Mol. Biol. 25:23-31.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 23-31
    • Machabee, S.1    Wall, L.2    Morse, D.3
  • 19
    • 0028977898 scopus 로고
    • A nuclear-encoded form II Rubisco in dinoflagellates
    • Morse, D., Salois, P., Markovic, P. & Hastings, J. W. 1995. A nuclear-encoded form II Rubisco in dinoflagellates. Science 268: 1622-4.
    • (1995) Science , vol.268 , pp. 1622-1624
    • Morse, D.1    Salois, P.2    Markovic, P.3    Hastings, J.W.4
  • 20
    • 0021328927 scopus 로고
    • Nucleotide sequence of the ribulose-bisphosphate carboxylase gene from Rhodospirillum rubrum
    • Nargang, F., McIntosh, L. & Somerville, C. 1984. Nucleotide sequence of the ribulose-bisphosphate carboxylase gene from Rhodospirillum rubrum. Mol. Gen. Genet. 193:220-4.
    • (1984) Mol. Gen. Genet. , vol.193 , pp. 220-224
    • Nargang, F.1    McIntosh, L.2    Somerville, C.3
  • 21
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen, H., Engelbrecht, J., Brunak, S. & Von Heijine, G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10:1-6.
    • (1997) Protein Eng. , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijine, G.4
  • 22
    • 0035951113 scopus 로고    scopus 로고
    • Members of a dinoflagellate luciferase gene family differ in synonymous substitution rates
    • Okamoto, O. K., Liu, L., Robertson, D. L. & Hastings, J. W. 2001. Members of a dinoflagellate luciferase gene family differ in synonymous substitution rates. Biochemistry 40:15862-8.
    • (2001) Biochemistry , vol.40 , pp. 15862-15868
    • Okamoto, O.K.1    Liu, L.2    Robertson, D.L.3    Hastings, J.W.4
  • 23
    • 0030098202 scopus 로고    scopus 로고
    • Rubisco surprises in Dinoflagellates
    • Palmer, J. D. 1996. Rubisco surprises in Dinoflagellates. Plant Cell 8:343-5.
    • (1996) Plant Cell , vol.8 , pp. 343-345
    • Palmer, J.D.1
  • 24
    • 0031962934 scopus 로고    scopus 로고
    • Rhodobactera capsulatus genes encoding form I ribulose-1,5-bisphosphate carboxylase/oxygenase (ccbLS) and neighbouring genes were acquired by a horizontal gene transfer
    • Paoli, G. C., Soyer, F., Shively, J. & Tabita, F. R. 1998. Rhodobactera capsulatus genes encoding form I ribulose-1,5-bisphosphate carboxylase/oxygenase (ccbLS) and neighbouring genes were acquired by a horizontal gene transfer. Microbiology 144: 219-27.
    • (1998) Microbiology , vol.144 , pp. 219-227
    • Paoli, G.C.1    Soyer, F.2    Shively, J.3    Tabita, F.R.4
  • 25
    • 0001584709 scopus 로고
    • Biochemistry of the dinoflagellate nucleus
    • Taylor, F. J. R. [Ed.]. Blackwell Scientific, Boston
    • Rizzo, P. J. 1987. Biochemistry of the dinoflagellate nucleus. In Taylor, F. J. R. [Ed.] The Biology of Dinoflagellates. Blackwell Scientific, Boston, pp. 143-73.
    • (1987) The Biology of Dinoflagellates , pp. 143-173
    • Rizzo, P.J.1
  • 26
    • 0030096623 scopus 로고    scopus 로고
    • Rubisco in marine symbiotic dinoflagellates: Form II enzymes in eukaryotic oxygenic phototrophs encoded by a nuclear multigene family
    • Rowan, R., Whitney, S. M., Fowler, A. & Yellowlees, D. 1996. Rubisco in marine symbiotic dinoflagellates: form II enzymes in eukaryotic oxygenic phototrophs encoded by a nuclear multigene family. Plant Cell 8:539-53.
    • (1996) Plant Cell , vol.8 , pp. 539-553
    • Rowan, R.1    Whitney, S.M.2    Fowler, A.3    Yellowlees, D.4
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-25.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 28
    • 0029053720 scopus 로고
    • Revolution in rapid amplification of cDNA ends: New strategies for polymerase chain reaction cloning of full-length cDNA ends
    • Schaefer, B. C. 1995. Revolution in rapid amplification of cDNA ends: new strategies for polymerase chain reaction cloning of full-length cDNA ends. Anal. Biochem. 227:255-73.
    • (1995) Anal. Biochem. , vol.227 , pp. 255-273
    • Schaefer, B.C.1
  • 29
    • 0033499020 scopus 로고    scopus 로고
    • Dinophyte chloroplasts and phylogeny - A review
    • Schnepf, E. & Elbrachter, M. 1999. Dinophyte chloroplasts and phylogeny - a review. Grana 38:81-97.
    • (1999) Grana , vol.38 , pp. 81-97
    • Schnepf, E.1    Elbrachter, M.2
  • 30
  • 31
    • 0001791944 scopus 로고
    • Dinoflagellate nuclei
    • Spector, D. L. [Ed.]. Academic Press, New York
    • Spector, D. L. 1984. Dinoflagellate nuclei. In Spector, D. L. [Ed.] Dinoflagellates. Academic Press, New York, pp. 1-15.
    • (1984) Dinoflagellates , pp. 1-15
    • Spector, D.L.1
  • 32
    • 0032817398 scopus 로고    scopus 로고
    • Questions about the complexity of chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
    • Spreitzer, R. J. 1999. Questions about the complexity of chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase. Photosynth. Res. 60:29-42.
    • (1999) Photosynth. Res. , vol.60 , pp. 29-42
    • Spreitzer, R.J.1
  • 33
    • 0032840522 scopus 로고    scopus 로고
    • Microbial ribulose 1,5-bisphosphate carboxylase/ oxygenase: A different perspective
    • Tabita, F. R. 1999. Microbial ribulose 1,5-bisphosphate carboxylase/ oxygenase: a different perspective. Photosynth. Res. 60:1-28.
    • (1999) Photosynth. Res. , vol.60 , pp. 1-28
    • Tabita, F.R.1
  • 34
    • 0033624957 scopus 로고    scopus 로고
    • Phylogenetic analyses indicate that the 19′ hexanoyloxy- fucoxanthin containing dinoflagellates have tertiary plastids of haptophyte origin
    • Tengs, T., Dahlberg, O. K, Shalchian-Tabrizi, K., Klaveness, D., Rudi, K., Delwiche, C. F. & Jakobsen, K. S. 2000. Phylogenetic analyses indicate that the 19′ hexanoyloxy-fucoxanthin containing dinoflagellates have tertiary plastids of haptophyte origin. Mol. Biol. Evol. 17:718-29.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 718-729
    • Tengs, T.1    Dahlberg, O.K.2    Shalchian-Tabrizi, K.3    Klaveness, D.4    Rudi, K.5    Delwiche, C.F.6    Jakobsen, K.S.7
  • 35
    • 0028874080 scopus 로고
    • Structure and expression of Euglena gracilis nuclear rbcS genes encoding the small subunits of the ribulose 1,5-bisphosphate carboxylase/oxygenase: A novel splicing process for unusual intervening sequences
    • Tessier, L. H., Paulus, F., Keller, M., Vial, C. & Imbault, P. 1995. Structure and expression of Euglena gracilis nuclear rbcS genes encoding the small subunits of the ribulose 1,5-bisphosphate carboxylase/oxygenase: a novel splicing process for unusual intervening sequences. J. Mol. Biol. 245:22-33.
    • (1995) J. Mol. Biol. , vol.245 , pp. 22-33
    • Tessier, L.H.1    Paulus, F.2    Keller, M.3    Vial, C.4    Imbault, P.5
  • 36
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acid. Res. 22: 4673-80.
    • (1994) Nucleic Acid. Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 0037694034 scopus 로고    scopus 로고
    • "Green-like" and "red-like" RubisCO cbbL genes in Rhodobacter-azotogormans
    • Uchino, Y. & Yokota, A. 2003. "Green-like" and "red-like" RubisCO cbbL genes in Rhodobacter-azotogormans. Mol. Biol. Evol. 20:821-30.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 821-830
    • Uchino, Y.1    Yokota, A.2
  • 38
    • 0031972428 scopus 로고    scopus 로고
    • 2 specificity of single-subunit ribulose-bisphosphate carboxylase from the dinoflagellate, Amphidinium carterae
    • 2 specificity of single-subunit ribulose-bisphosphate carboxylase from the dinoflagellate, Amphidinium carterae. Aust. J. Plant. Physiol. 25:131-8.
    • (1998) Aust. J. Plant. Physiol. , vol.25 , pp. 131-138
    • Whitney, S.M.1    Andrew, T.J.2
  • 39
    • 0028951751 scopus 로고
    • Evidence that some dinoflagellates contain a ribulose-1,5-bisphosphate carboxylase/oxygenase related to that of the α-proteobacteria
    • Whitney, S. M., Shaw, D. C. & Yellowlees, D. 1995. Evidence that some dinoflagellates contain a ribulose-1,5-bisphosphate carboxylase/oxygenase related to that of the α-proteobacteria. Proc. R. Soc. Lond. B 259:271-5.
    • (1995) Proc. R. Soc. Lond. B , vol.259 , pp. 271-275
    • Whitney, S.M.1    Shaw, D.C.2    Yellowlees, D.3
  • 40
    • 0037015024 scopus 로고    scopus 로고
    • A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
    • Yoon, H. S., Hackett, J. D. & Bhattacharya, D. 2002. A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proc. Natl. Acad. Sci. USA 99:11724-9.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11724-11729
    • Yoon, H.S.1    Hackett, J.D.2    Bhattacharya, D.3
  • 41
    • 0033536215 scopus 로고    scopus 로고
    • Single gene circles in dinoflagellate chloroplast genomes
    • Zhang, Z., Green, B. R. & Cavalier-Smith, T. 1999. Single gene circles in dinoflagellate chloroplast genomes. Nature 400:155-9.
    • (1999) Nature , vol.400 , pp. 155-159
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.