Direct Atmospheric Pressure Coupling of Polyacrylamide Gel Electrophoresis to Mass Spectrometry for Rapid Protein Sequence Analysis

Journal of Proteome Research

Volumn 2, Issue 6, 2003, Pages 610-617

  Coon, Joshua J ^a,c   Steele, Heather A ^b,c   Laipis, Philip J ^b   Harrison, W W ^a  

^a University of Florida ^*  (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c UNIVERSITY OF VIRGINIA   (United States)

Author keywords

Ablation; Desorption ionization; Ionization mass spectrometry; Polyacrylamide gels; Proteins

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; ATMOSPHERIC PRESSURE; DESORPTION; DNA POLYMORPHISM; ELECTROPHORESIS; ENZYMATIC DEGRADATION; IONIZATION; MASS SPECTROMETRY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN DATABASE;

ATMOSPHERIC PRESSURE; CARBONIC ANHYDRASES; DATABASES, PROTEIN; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HUMANS; MASS SPECTROMETRY; MYOGLOBIN; POINT MUTATION; SEQUENCE ANALYSIS, PROTEIN;

EID: 0346252169     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr034031f     Document Type: Article

References (53)

1. Wilkins, M. R.; Sanchez, J. C.; Golley, A. A.; Appel, R. D.; Humphery-Smith, I.; Hochstrasser, D. F.; Williams, K. L. Biotechnol. Genet. Eng. News 1996, 13, 19-50.
2. Haynes, P. A.; Yates, J. R. Yeast 2000, 17, 81-87.
3. Tyers, M.; Mann, M. Nature 2003, 422, 193-197.
4. Hancock, W. S.; Wu, S. L.; Shieh, P. Proteomics 2002, 2, 352-359.
5. Hunt, D. F.; Yates, J. R.; Shabanowitz, J.; Winston, S.; Hauer, C. R. Proc. Natl. Acad. Sci. 1986, 83, 6233-6237.
6. Hunt, D. F.; Bone, W. M.; Shabanowitz, J.; Rhodes, J.; Ballard, J. M. Anal. Chem. 1981, 53, 1706-1708.
7. Lippstreu-Fisher, D. L.; Gross, M. L. Anal. Chem. 1985, 57, 1174-1180.
8. Hunt, D. F. J. Proteome Res. 2002, 1, 15-19.
9. Griffin, T. J.; Aebersold, R. J. Biol. Chem. 2001, 276, 45, 497-45, 500.
10. Griffin, T. J.; Aebersold, R. J. Biol. Chem. 2001, 276, 45, 497-45, 500.
11. Gevaert, K.; Vandekerckhove, J. Electrophoresis 2000, 21, 1145.
12. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
13. Lahm, H. W.; Langen, H. Electrophoresis 2000, 21, 2105.
14. Foret, F.; Priesler, J. Proteomics 2002, 2, 360-372.
15. Hamdan, M.; Galvani, M.; Righetti, P. G. Mass Spectrom. Rev. 2001, 20, 121-141.
16. Hille, J. M.; Freed, A. L.; Watzig, H. Electrophoresis 2001, 22, 4035-4052.
17. Rabilloud, T. Proteomics 2002, 2, 3-10.
18. Courchesne, P. L.; Patterson, S. D. BioTechniques 1997, 22, 244.
19. Williams, K.; LoPresti, M.; Stone, K. Optimization of In-Gel Digest Protocol in Techniques in Protein Chemistry VIII; Marshak, D., Ed.; Academic Press: New York, 1997.
20. Lopez, M. F. Electrophoresis 2000, 21, 1082-1093.
21. Gygi, S. P.; Corthals, G. L.; Zhang, Y.; Rochon, Y.; Aebersold, R. Proc. Natl. Acad. Sci. 2000, 97, 9390-9395.
22. Vestling, M. M.; Fenselau, C. Mass Spectrom. Rev. 1995, 14, 169-178.
23. Vestling, M. M.; Fenselau, C. Anal. Chem. 1994, 66, 471-477.
24. Bienvenut, W. V.; Sanchez, J. C.; Karmime, A.; Rouge, V.; Rose, K.; Binz, P. A.; Hochstrasser, D. F. Anal. Chem. 1999, 71, 4800-4807.
25. Schleuder, D.; Hillenkamp, F.; Strupat, K. Anal. Chem. 1999, 71, 3238-3247.
26. Strahler, J. R.; Smelyanskiy, Y.; Lavine, G.; Allison, J. Int. J. Mass Spectrom. Ion Process. 1997, 169/170, 111-126.
27. Muller, M.; Gras, R.; Appel, R. D.; Bienvenut, W. V.; Hochstrasser, D. F. J. Am. Soc. Mass Spectrom. 2002, 13, 221-231.
28. Binz, P. A.; Muller, M.; Walther, D.; Bienvenut, W. V.; Gras, R.; Hoogland, C.; Bouchet, G.; Gasteiger, E.; Fabbretti, R.; Gay, S.; Palagi, P.; Wilkins, M. R.; Rouge, V.; Tonella, L.; Paesano, S.; Rossellat, G.; Karmime, A. ; Bairoch, A.; Sanchez, J. C.; Appel, R. D.; Hochstrasser, D. F. Anal. Chem. 1999, 71, 4981-4988.
29. Schreiner, M.; Strupat, K.; Lottspeich, F.; Eckerskorn, C. Electrophoresis 1996, 17, 954-961.
30. Ogorzalek Loo, R. R.; Mitchell, C.; Stevenson, T. I.; Loo, J. A.; Andrews, P. C. Int. J. Mass Spectrom. Ion Processes 1997, 169/170, 273-290.
31. Zaluzec, E. J.; Gage, D. A.; Allison, J.; Watson, J. T. J. Am. Soc. Mass Spectrom. 1994, 5, 230-237.
32. Strupat, K.; Karas, M.; Hillenkamp, F.; Eckerskorn, C.; Lottspeich, F. Anal. Chem. 1994, 66, 464-470.
33. Eckerskorn, C.; Strupat, K.; Schleuder, D.; Hochstrasser, D.; Sanchez, J. C.; Lottspeich, F.; Hillenkamp, F. Anal. Chem. 1997, 69, 2888-2892.
34. Ogorzalek Loo, R. R.; Stevenson, T. I.; Mitchell, C.; Loo, J. A.; Andrews, P. C. Anal. Chem. 1996, 68, 1910-1917.
35. Ogorzalek Loo, R. R.; Mitchell, C.; Stevenson, T. I.; Martin, S. A.; Hines, W.; Juhasz, P.; Patterson, D.; Peltier, J.; Loo, J. A.; Andrews, P. C. Electrophoresis 1997, 18, 382-390.
36. Ogorzalek Loo, R. R.; Cavalcoli, J. D.; VanBogelen, R. A.; Mitchell, C.; Loo, J. A.; Moldover, B.; Andrews, P. C. Anal. Chem. 2001, 73, 4063-4070.
37. Loo, J. A.; Brown, J.; Critchley, G.; Mitchell, C.; Andrews, P. C.; Ogorzalek Loo, R. R. Electrophoresis 1999, 20, 743-748.
38. Baltz-Knorr, M.; Ermer, D. R.; Schriver, K. E.; Haglund, R. F. J. Mass Spectrom. 2002, 37, 254.
39. th Asilomar Conf. Mass Spectrom. Pacific Grove, CA, 2001.
40. Coon, J. J.; Steele, H. A.; Laipis, P. J.; Harrison, W. W. J. Mass Spectrom. 2002, 37, 1163-1167.
41. Coon, J. J.; McHale, K. J.; Harrison, W. W. Rapid Commun. Mass Spectrom. 2002, 16, 681-685.
42. Van Breemen, R. B.; Snow, M.; Cotter, R. J. Int. J. Mass Spectrom. Ion Processes 1983, 49, 35-50.
43. Coon, J. J.; Harrison, W. W. Anal. Chem. 2002, 74, 5600-5605.
44. Kampmeier, J.; Dreisewerd, K.; Schurenberg, M.; Strupat, K. Int. J. Mass Spectrom. Ion Processes 1997, 169-170, 31.
45. Tanhauser, S. M.; Jewell, D. A.; Tu, C. K.; Silverman, D. N.; Laipis, P. J. Gene 1992, 117, 113-117.
46. Studier, F. W.; Rosenberg, A. H.; Dunn, J. J.; and Dubendorf, J. W. Methods Enzymol. 1990, 185, 60-89.
47. Khalifah, R. G.; Strader, D. J.; Bryant, S. H.; Gibson, S. M. Biochemistry 1977, 16, 2241-2247.
48. Engberg, P.; Millqvist, E.; Pohl, G.; Lindskog, S. Arch. Biochem Biophys. 1985, 241, 628-638.
49. Gerstner, A.; Csapo, Z.; Sasvari-Szekely, M.; Guttman, A. Electrophoresis 2000, 21, 834.
50. Guttman, A.; Ronai, Z. Electrophoresis 2000, 21, 3952.
51. Guttman, A.; Csapo, Z.; Robbins, D. Electrophoresis 2002, 2, 469.
52. Brumley, R. L.; Smith, L. M. Nucleic Acids Res. 1991, 19, 4121.
53. Miller, C. A.; Yi, D.; Perkins, P. D. Rapid Commun. Mass Spectrom. 2003, 17, 860-868.