Bacteria associated with cysts of the soybean cyst nematode (Heterodera glycines)

Applied and Environmental Microbiology

Volumn 69, Issue 1, 2003, Pages 607-615

  Nour, Sarah M ^a   Lawrence, John R ^c   Zhu, Hong ^a   Swerhone, George D W ^c   Welsh, Martha ^a   Welacky, Tom W ^b   Topp, Edward ^a  

^a AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^b HARROW RESEARCH AND DEVELOPMENT CENTRE   (Canada)

^c ENVIRONMENT CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CROPS; ECOLOGY; ELECTROPHORESIS; MORPHOLOGY;

SURFACE STERILIZATION;

MICROBIOLOGY;

PALINDROMIC DNA;

BACTERIUM; CYST; NEMATODE; PATHOGEN; SOYBEAN;

ACTINOMADURA; ARTICLE; BACTERIUM; CELL STRUCTURE; COLONY FORMING UNIT; DNA FINGERPRINTING; ECOLOGY; FUNGUS; GENETIC ANALYSIS; HETERODERA GLYCINES; IN SITU HYBRIDIZATION; MICROBIAL DIVERSITY; MICROBIAL POPULATION DYNAMICS; MICROFLORA; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; RNA SEQUENCE; SEQUENCE ANALYSIS; SOYBEAN; STAINING; STREPTOMYCES; VARIOVORAX;

ANIMALS; BACTERIA; COLONY COUNT, MICROBIAL; CULTURE MEDIA; DNA, RIBOSOMAL; ECOSYSTEM; ELECTROPHORESIS; IN SITU HYBRIDIZATION; MICROSCOPY, CONFOCAL; MOLECULAR SEQUENCE DATA; NEMATODA; RNA, RIBOSOMAL, 16S; SOYBEANS;

CANADA;

ACTINOMADURA; BACTERIA (MICROORGANISMS); FUNGI; GLYCINE MAX; HETERODERA; HETERODERA GLYCINES; LYSOBACTER; NEMATODA; STREPTOMYCES; UNCULTURED ACTINOMYCETE; VARIOVORAX;

EID: 0346035733     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.1.607-615.2003     Document Type: Article

References (62)

1. Agrios, G. N. 1997. Plant pathology, 4th ed. Academic Press, San Diego, Calif.
2. Amann, R., L. Krumholz, and D. A. Stahl. 1990. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:762-770.
3. Atibalentja, N., G. R. Noel, and L. L. Domier. 2000. Phylogenetic position of the North American isolate of Pasteuria that parasitizes the soybean cyst nematode, Heterodera glycines, as inferred from 16S rDNA sequence analysis. Int. J. Syst. Evol. Microbiol. 50:605-613.
4. Barker, K. R., and S. R. Koenning. 1998. Developing sustainable systems for nematode management. Annu. Rev. Phytopathol. 36:165-205.
5. Bernard, E. C., L. H. Self, and D. D. Tyler. 1997. Fungal parasitism of soybean cyst nematode, Heterodera glycines (Nemata: Heteroderidae), in differing cropping-tillage regimes. Appl. Soil Ecol. 5:57-70.
6. Bukhalid, R. A., T. Takeuchi, D. Labeda, and R. Loria. 2002. Horizontal transfer of the plant virulence gene, necl, and flanking sequences among genetically distinct Streptomyces strains in the Diastatochromogenes cluster. Appl. Environ. Microbiol. 68:738-744.
7. Chelius, M. K., and E. W. Triplett. 2000. Dyadobacter fermentans gen. nov., sp. nov., a novel gram-negative bacterium isolated from surface-sterilized Zea mays stems. Int. J. Syst. Evol. Microbiol. 50:751-758.
8. Chen, S. Y., D. W. Dickson, and D. J. Mitchell. 1996. Pathogenicity of fungi to eggs of Heterodera glycines. J. Nematol. 28:148-158.
9. Chen, W. M., and T. M. Lee. 2001. Genetic and phenotypic diversity of rhizobial isolates from sugarcane-Sesbania cannabina-rotation fields. Biol. Fert. Soils 34:14-20.
10. Chen, Z. X., and D. W. Dickson. 1998. Review of Pasteuria penetrans: biology, ecology, and biological control potential. J. Nematol. 30:313-340.
11. AL, p. 2083-2089. In J. T. Staley, M. P. Bryant, N. Pfennig, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology. Williams and Wilkins, Baltimore, Md.
12. Christensen, P., and F. D. Cook. 1978. Lysobacter, a new genus of nonfruiting, gliding bacteria with a high base ratio. Int. J. Syst. Bacteriol. 28:367-393.
13. Cronin, D., Y. Moenne Loccoz, C. Dunne, and F. O'Gara. 1997. Inhibition of egg hatch of the potato cyst nematode Globodera rostochiensis by chitinase-producing bacteria. Eur. J. Plant Pathol. 103:433-440.
14. Desaint, S., A. Hartmann, N. R. Parekh, and J.-C. Fournier. 2000. Genetic diversity of carbofuran-degrading soil bacteria. FEMS Microbiol. Ecol. 34:173-180.
15. Dunbar, J., S. Takala, S. M. Barns, J. A. Davis, and C. R. Kuske. 1999. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65:1662-1669.
16. Gibson, D. M., R. A. Moreau, G. P. McNeil, and B. B. Brodie. 1995. Lipid composition of cyst stages of Globodera rostochiensis. J. Nematol. 27:304-311.
17. Glöckner, F. O., E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler, and R. Amann. 2000. Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl. Environ. Microbiol. 66:5053-5065.
18. Hackenberg, C., T. C. Vrain, and R. A. Sikora. 1999. Rhizosphere colonization pattern of Agrobacterium radiobacter strain G12A, an antagonistic rhizobacterium to the potato cyst nematode Globodera pallida. Microbiol. Res. 157:57-61.
19. Hashizume, H., M. Igarashi, S. Hattori, M. Hori, M. Hamada, and R. Takeuchi. 2001. Tripropeptins, novel antimicrobial agents produced by Lysobacter sp. I. Taxonomy, isolation and biological activities. J. Antibiot. 54:1054-1059.
20. Hasky Guenther, K., S. Hoffmann Hergarten, and R. A. Sikora. 1998. Resistance against the potato cyst nematode Globodera pallida systemically induced by the rhizobacteria Agrobacterium radiobacter (G12) and Bacillus sphaericus (B43). Fundam. Appl. Nematol. 21:511-517.
21. Iizuka, T., S. Yamanaka, T. Nishiyama, and A. Hiraishi. 1998. Isolation and phylogenetic analysis of aerobic copiotrophic ultramicrobacteria from urban soil. J. Gen. Appl. Microbiol. 44:75-84.
22. Irgens, R. L., J. J. Gosink, and J. T. Staley. 1996. Polaromonas vacuolata gen. nov., sp. nov., a psychrophilic, marine, gas vacuolate bacterium from Antarctica. Int. J. Syst. Bacteriol. 46:822-826.
23. Jones, P. W., G. L. Tylka, and R. N. Perry. 1998. Hatching, p. 181-212. In R. N. Perry and D. J. Wright (ed.), The physiology and biochemistry of free-living and plant-parasitic nematodes. CAB International, New York, N.Y.
24. Kampfer, P., M. A. Andersson, F. A. Rainey, R. M. Kroppenstedt, and M. Salkinoja-Salonen. 1999. Williamsia muralis gen. nov., sp. nov., isolated from the indoor environment of a children's day care center. Int. J. Syst. Bacteriol. 49:681-687.
25. Kerry, B. R. 2000. Rhizosphere interactions and the exploitation of microbial agents for the biological control of plant-parasitic nematodes. Annu. Rev. Phytopathol. 38:423-441.
26. Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614-3621.
27. Labeda, D. P., K. Hatano, R. M. Kroppenstedt, and T. Tamura. 2001. Review of the genus Lentzea and proposal for Lechevalieria gen. nov. Int. J. Syst. Evol. Microbiol. 51:1045-1050.
28. Labeda, D. P., and R. M. Kroppenstedt. 2000. Phylogenetic analysis of Saccharothrix and related taxa: proposal for Actinosynnemataceae fam. nov. Int. J. Syst. Evol. Microbiol. 50:331-336.
29. Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 114-143. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, N.Y.
30. Lawrence, J. R., D. R. Korber, G. M. Wolfaardt, D. E. Caldwell, and T. R. Neu. 2002. Analytical imaging and microscopy techniques, p. 39-61. In C. J. Hurst, R. L. Crawford, G. R. Knudsen, M. McInerney, and L. D. Stetzenbach (ed.), Manual of environmental microbiology, 2nd ed. American Society for Microbiology, Washington, D.C.
31. Leung, K., and E. Topp. 2001. Bacterial community dynamics in liquid swine manure during storage: molecular analysis using DGGE/PCR of 16S rDNA. FEMS Microbiol. Ecol. 38:169-177.
32. Li, L., C. Kato, and K. Horikoshi. 1999. Bacterial diversity in deep-sea sediments from different depths. Biodivers. Conserv. 8:659-677.
33. Li, L., C. Kato, and K. Horikoshi. 1999. Microbial diversity in sediments collected from the deepest cold-seep area, the Japan trench. Mar. Biotechnol. 1:391-400.
34. Manz, W., K. Wendt-Potthoff, T. R. Neu, U. Szewzyk, and J. R. Lawrence. 1999. Phylogenetic composition, spatial structure and dynamics of lotic bacterial biofilms investigated by fluorescent in situ hybridization and confocal scanning laser microscopy. Microb. Ecol. 37:225-237.
35. Manz, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15:593-600.
36. Manz, W., U. Szewzyk, P. Ericsson, R. Amann, K.-H. Schleifer, and T. Stenström. 1993. In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes. Appl. Environ. Microbiol. 59:2293-2298.
37. Meier, H., R. Amann, W. Ludwig, and K. H. Schleifer. 1999. Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content. Syst. Appl. Microbiol. 22:186-196.
38. Meyer, S. L. F., and R. J. Meyer. 1996. Greenhouse studies comparing strains of the fungus Verticillium lecanii for activity against the nematode Heterodera glycines. Fundam. Appl. Nematol. 19:305-308.
39. Nam, D. H., S. K. Lim, M. H. Chung, E. S. Lee, Y. S. Sohn, and D. Y. Ryu-Dewey. 2001. Membrane transporter genes in cephabacin biosynthetic gene cluster of Lysobacter lactamgenus. J. Microbiol. Biotechnol. 11:153-159.
40. Neipp, P. W., and J. O. Becker. 1999. Evaluation of biocontrol activity of rhizobacteria from Beta vulgaris against Heterodera schachtii. J. Nematol. 31:54-61.
41. Neu, T. R., G. D. W. Swerhone, and J. R. Lawrence. 2001. Assessment of lectin-binding analysis for in situ detection of glycoconjugates in biofilm systems. Microbiology 147:299-313.
42. Perry, R. N. 1997. Plant signals in nematode hatching and attraction, p. 38-50. In C. Fenoll et al. (ed.), Cellular and molecular aspects of plantnematode interactions. Kluwer Academic Publishers, Dordrecht, The Netherlands.
43. Rabus, R., M. Fukui, H. Wilkes, and F. Widdel. 1996. Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil. Appl. Environ. Microbiol. 62:3605-3613.
44. Rainey, F. A., N. Weiss, H. Prauser, and E. Stackebrandt. 1994. Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan. FEMS Microbiol. Lett. 118:135-140.
45. Reitz, M., K. Rudolph, I. Schroder, S. Hoffman-Hergarten, J. Hallman, and R. A. Sikora. 2000. Lipopolysaccharides on Rhizobium etli strain G12 act in potato roots as an inducing agent of systemic resistance to infection by the cyst nematode Globodera pallida. Appl. Environ. Microbiol. 66:3515-3518.
46. Roller, C., M. Wagner, R. Amann, W. Ludwig, and K.-H. Schleifer. 1994. In situ probing of Gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides. Microbiology 140:2849-2858.
47. Sakka, K., R. R. Kusaka, A. Kawano, S. Karita, J. Sukhumavasi, T. Kimura, and K. Ohmiya. 1998. Cloning and sequencing of the gene encoding chitinase ChiA from Xanthomonas sp. strain AK and some properties of ChiA. J. Ferment. Bioeng. 86:527-533.
48. Santegoeds, C. M., T. G. Ferdelman, G. Muyzer, and D. de Beer. 1998. Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms. Appl. Environ. Microbiol. 64:3731-3739.
49. Sayre, R. M., W. P. Wergin, J. M. Schmidt, and M. P. Starr. 1991. Pasteuria nishizawae sp nov., a mycelial and endospore-forming bacterium parasitic on cyst nematodes of genera Heterodera and Globodera. Res. Microbiol. 142:551-564.
50. Schumann, P., F. A. Rainey, J. Burghardt, E. Stackebrandt, and. N. Weiss. 1999. Reclassification of Brevibacterium oxydans (Chatelain and Second 1966) as Microbacterium oxydans comb. nov. Int. J. Syst. Bacteriol. 49:175-177.
51. Schwieger, F., and C. C. Tebbe. 2000. Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a nontarget plant (Chenopodium album): linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria. Appl. Environ. Microbiol. 66:3556-3565.
52. Shepherd, A. M. 1962. The emergence of larvae from cysts in the genus Heterodera: a review of factors affecting hatching. Technical communication number 32. Commonwealth Bureau of Helminthology. Commonwealth Agricultural Bureau, Farnham Royal, United Kingdom.
53. Siddiqui, Z. A., and L. Mahmood. 1999. Role of bacteria in the management of plant parasitic nematodes: a review. Bioresour. Technol. 69:167-179.
54. Smith, L. M., E. Tola, P. deBoer, and F. O'Gara. 1999. Signalling by the fungus Pythium ultimum represses expression of two ribosomal RNA operons with key roles in the rhizosphere ecology of Pseudomonas fluorescens F113. Environ. Microbiol. 1:495-502.
55. Stahl, D. A., and R. Amann. 1991. Development and application of nucleic acid probes in bacterial systematics, p. 205-248. In E. Stackebrandt and M. Goodfellow (ed.), Sequencing and hybridization techniques in bacterial systematics. John Wiley, Chichester, United Kingdom.
56. Steyn, P. L., P. Segers, M. Vancanneyt, P. Sandra, K. Kersters, and J. J. Joubert. 1998. Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int. J. Syst. Bacteriol. 48:165-177.
57. Topp, E., H. Zhu, S. M. Nour, S. Houot, M. Lewis, and D. Cuppels. 2000. Characterization of an atrazine-degrading Pseudaminobacter sp. isolated from Canadian and French agricultural soils. Appl. Environ. Microbiol. 66:2773-2782.
58. Topp, E., S. Millar, H. Bork, and M. Welsh. 1998. Effects of marigold (Tagetes sp.) roots on soil microorganisms. Biol. Fert. Soils 27:149-154.
59. Woese, C. R., D. Yang, L. Mandelco, and K. O. Stetter. 1990. The flexibacterflavobacter connection. Syst. Appl. Microbiol. 13:161-165.
60. Wright, D. S., L. D. Graham, and P. A. Jennings. 1998. Cloning of a Lysobacter enzymogenes gene that encodes an arginyl endopeptidase (endoproteinase Arg-C). Biochim. Biophys. Acta 1443:369-374.
61. Ying, L., B. Yu, and C. Wenxin. 1999. Studies on DNA-DNA hybridization and 16S rDNA sequence of rhizobia isolated from Shapotou Desert soil in Ningxia autonomous region of China. Acta Microbiol. Sin. 39:95-99.
62. Zhang, Z., T. Kudo, Y. Nakajima, and Y. Wang. 2001. Clarification of the relationship between the members of the family Thermomonosporaceae on the basis of 16S rDNA, 16S-23S rRNA internal transcribed spacer and 23S rDNA sequences and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. 51:373-383.