Prediction of Posttranslational Modifications Using Intact-Protein Mass Spectrometric Data

Analytical Chemistry

Volumn 76, Issue 2, 2004, Pages 276-282

  Holmes, Mark R ^a   Giddings, Michael C ^a,b  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUZZY SETS; MASS SPECTROMETRY; MATHEMATICAL MODELS; PROBABILITY; YEAST;

MASS FINGERPRINTING; PRECURSORS;

PROTEINS;

PROTEIN; RIBOSOME PROTEIN;

ACCURACY; ARTICLE; CHEMICAL MODIFICATION; DATA ANALYSIS; MASS SPECTROMETRY; MEASUREMENT; MODEL; NONHUMAN; PROBABILITY; PROTEIN DEGRADATION; PROTEIN ISOLATION; PROTEIN PROCESSING; RIBOSOME SUBUNIT; SACCHAROMYCES CEREVISIAE; VALIDATION PROCESS;

COMPUTATIONAL BIOLOGY; FUZZY LOGIC; INTERNET; MASS SPECTROMETRY; PROBABILITY; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEINS; SOFTWARE; SOFTWARE VALIDATION;

EID: 0345866745     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac034739d     Document Type: Article

References (27)

1. Taylor, G. K.; Kun, Y.-B.; Forbes, A. J.; Meng, F.; McCarthy, R.; Kelleher, N. L. Anal. Chem. 2003, 75, 4081-4086.
2. VerBerkmoes, N. C.; Bundy, J. L.; Hauser, L.; Asano, K. G.; Razumovskaya, J.; Larimer, F.; Hettich, R. L.; Stephenson, J. L., Jr. J. Proteome Res. 2002, 1, 239-252.
3. Lee, S. W.; Berger, S. J.; Martinovic, S.; Pasa-Tolic, L.; Anderson, G. A.; Shen, Y.; Zhao, R.; Smith, R. D. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 5942-5947.
4. Smith, R. D.; Loo, J. A.; Edmonds, C. G.; Barinaga, C. J.; Udseth, H. R. Anal. Chem. 1990, 62, 882-899.
5. Lubman, D. M.; Kachman, M. T.; Wang, H.; Gong, S.; Yan, F.; Hamler, R. L.; O'Neil, K. A.; Zhu, K.; Buchanan, N. S.; Barder, T. J. J. Chromatogr., B: Anal. Technol. Biomed. Life Sci. 2002, 782, 183-196.
6. Meng, F.; Cargile, B. J.; Patrie, S. M.; Johnson, J. R.; McLoughlin, S. M.; Kelleher, N. L. Anal. Chem. 2002, 74, 2923-2929.
7. Ariel, N.; Zvi, A.; Makarova, K. S.; Chitlaru, T.; Elhanany, E.; Velan, B.; Cohen, S.; Friedlander, A. M.; Shafferman, A. Infect. Immunol. 2003, 71, 4563-4579.
8. Cohen, A. M.; Rumpel, K.; Coombs, G. H.; Wastling, J. M. Int. J. Parasitol. 2002, 32, 39-51.
9. Manning, D. R.; DiSalvo, J.; Stull, J. T. Mol. Cell. Endocrinol. 1980, 19, 1-19.
10. Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Electrophoresis 1999, 20, 3551.
11. MacCoss, M. J.; Wu, C. C.; Yates, J. R., 3rd Anal. Chem. 2002, 74, 5593-5599.
12. Clauser, K. R.; Baker, P.: Burlingame, A. L. Anal. Chem. 1999, 71, 2871-2882.
13. Giddings, M. C.; Shah, A. A.; Gesteland, R.; Moore, B. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 20-25.
14. Yates, J. R., 3rd; Eng, J. K.; McCormack, A. L.; Schieltz, D. Anal. Chem. 1995, 67, 1426-1436.
15. Wilkins, M. R.: Gasteiger, E.; Gooley, A. A.; Herbert, B. R.; Molloy, M. P.; Binz, P. A.; Ou, K.; Sanchez, J. C.; Bairoch, A.; Williams, K. L.; Hochstrasser, D. F. J. Mol. Biol. 1999, 289. 645-657.
16. Nakai, K.; Kanehisa, M. Proteins 1991, 11, 95-110.
17. Nakai, K.; Kanehisa, M. Genomics 1992, 14, 897-911.
18. Nakai, K.; Horton, P. Trends Biochem. Sci. 1999, 24, 34-36.
19. Nielsen, H.; Engelbrecht, J.; Brunak, S.; von Heijne, G. Int. J. Neural Syst. 1997, 8, 581-599.
20. Nielsen, H.; Brunak, S.; von Heijne, G. Protein Eng. 1999, 12, 3-9.
21. Claros, M. G. Comput. Appl. Biosci. 1995, 11, 441-447.
22. Cooper, C. A.; Gasteiger, E.; Packer, N. H. Proteomics 2001, 1, 340-349.
23. Zadeh, L. A. IEEE Trans. Fuzzy Syst. 1996, 4, 103-111.
24. Bairoch, A.; Apweiler, R. Nucleic Acids Res. 2000, 28, 45-48.
25. Costanzo, M. C.; Hogan, J. D.; Cusick, M. E.; Davis, B. P.; Fancher, A. M.; Hodges, P. E.; Kondu, P.; Lengieza, C.; Lew-Smith, J. E.; Lingner, C.; Roberg-Perez, K. J.; Tillberg, M.; Brooks, J. E.; Garrels, J. I. Nucleic Acids Res. 2000, 28, 73-76.
26. Zadeh, L. A. Technometrics 1995, 37, 271-276.
27. Scharfe, C.; Zaccaria, P.; Hoertnagel, K.; Jaksch, M.; Klopstock, T.; Dembowski, M.; Lill, R.; Prokisch, H.; Gerbitz, K. D.; Neupert, W.; Mewes, H. W.; Meitinger, T. Nucleic Acids Res. 2000, 28, 155-158.