Monte Carlo simulation of the α-amylolysis of amylopectin potato starch. 2. α-amylolysis of amylopectin

Bioprocess and Biosystems Engineering

Volumn 26, Issue 2, 2003, Pages 123-132

  Marchal, L M ^a   Ulijn, R V ^b   De Gooijer, C D ^b   Franke, G T ^c   Tramper, J ^b  

^a Basic Supply Group   (Netherlands)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c Avebe Research and Development   (Netherlands)

Author keywords

Alpha amylase; Hydrolysis; Monte Carlo; Saccharides; Starch

Indexed keywords

AMYLASE; AMYLOPECTIN; BACTERIAL ENZYME; CARBOHYDRATE; STARCH;

ARTICLE; BACILLUS AMYLOLIQUEFACIENS; CARBOHYDRATE ANALYSIS; CARBOHYDRATE SYNTHESIS; COMPUTER MODEL; ENZYME SUBSTRATE; GENETIC ALGORITHM; HYDROLYSIS; MONTE CARLO METHOD; POTATO; PREDICTION; PRIORITY JOURNAL; VALIDATION PROCESS;

ALPHA-AMYLASE; AMYLOPECTIN; BACILLUS; BINDING SITES; COMPUTER SIMULATION; ENZYME ACTIVATION; KINETICS; MODELS, CHEMICAL; MODELS, STATISTICAL; MONTE CARLO METHOD; PROTEIN BINDING; STARCH; SUBSTRATE SPECIFICITY;

BACILLUS AMYLOLIQUEFACIENS; BACTERIA (MICROORGANISMS); SOLANUM TUBEROSUM;

EID: 0345830720     PISSN: 16157591     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00449-003-0342-0     Document Type: Article

References (18)

1. Marchal LM, Zondervan J, Bergsma J, Beeftink HH, Tramper J (2001) Monte Carlo simulation of the α-amylolysis of amylopectin potato starch. 1. Modeling of the structure of amylopectin. Bioproc Biosys Eng 24:163-170
2. Allen JD, Thoma JA (1976) Subsite mapping of enzymes. Application of the depolymerase computer model to two α-amylases. Biochem J 159:121-132
3. Torgerson EM, Brewer LC, Thoma JA (1979) Subsite mapping of enzymes. Use of subsite map to simulate complete time course of hydrolysis of a polymer substrate. Archs Biochem Biophys 196:13-22
4. Iwasa S, Aoshima H, Hiromi K, Hatano H (1974) Subsite affinities of bacterial liquefying α-amylase evaluated from the rate parameters of linear substrates. J Biochem 75:969-978
5. Marchal LM, van der Laar AMJ, Goetheer E, Schimmelpennink EB, Bergsma J, Beeftink HH, Tramper J (1999) The effect of temperature on the saccharide composition obtained after α-amylolysis of starch. Biotechnol Bioeng 63:344-355
6. Thoma JA, Rao CV, Brothers CE, Spradlin JE (1971) Subsite mapping of enzymes. Biochem J 246:5621-5635
7. Thoma JA, Brothers CE, Spradlin JE (1970) Subsite mapping of enzymes. Studies on Bacillus subtilis amylase. Biochemistry 9:1768-1775
8. MacGregor EA, MacGregor AW, Macri LJ, Morgan JE (1994) Models for the action of barley alpha-amylase isozymes on linear substrates. Carbohydr Res 257:249-268
9. Allen JD, Thoma JA (1976) Subsite mapping of enzymes, depolymerase computer modelling. Biochem J 159:105-120
10. Hiromi K (1970) Interpreatation of dependency of rate parameters of the degree of polymerization of substrate in enzyme-catalysed reactions. Evaluation of subsite affinities of exo-enzyme. Biochem Biophys Res Commun 40:1-6
11. Chipman DM, Sharon N (1970) Mechanism of lysozyme action. Science. 165:454-465
12. Gurney RW (1953) Ionic processes in solution. McGraw-Hill, London
13. Thoma JA, Allen JD (1976) Subsite mapping of enzymes: collecting and processing experimental data - a case study of an amylase-malto-oligosaccharide system. Carbohydr Res 48:105-124
14. Marchal LM, Tramper J (1999) Hydrolytic gain during hydrolysis reactions: implications and correction procedures. Biotechnol Tech 13:325-328
15. Hizukuri S (1996) Starch: analytical aspects. In: Eliasson AC (ed) Carbohydrates in food. Marcel Dekker, New York, pp 347-429
16. French D, Smith EE, Whelan WJ (1972) The structural analysis and enzymatic synthesis of a pentasaccharide alpha-limit dextrin formed from amylopectin by Bacillus substilis alpha-amylase. Carbohydr Res 22:123-134
17. Banzhaf W, Nordin P, Keller RE, Francone FD (1998) Genetic programming, an introduction. Morgan Kaufmann, San Francisco
18. Gidley MJ (1985) Quantification of the structural features of starch polysaccharides by NMR spectroscopy. Carbohydr Res 139:85-93