Phylogenetic analysis of Vietnamese isolates of feline immunodeficiency virus: Genetic diversity of subtype C

Archives of Virology

Volumn 148, Issue 4, 2003, Pages 783-791

  Nakamura, K ^a,e   Suzuki, Y ^b   Ikeo, K ^b   Ikeda, Y ^a   Sato, E ^a   Nguyen, N T P ^c   Gojobori, T ^b   Mikami, T ^a,d   Miyazawa, T ^a,e,f  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

^c NONG LAM UNIVERSITY   (Viet Nam)

^d NIHON UNIVERSITY   (Japan)

^e OSAKA UNIVERSITY   (Japan)

^f JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALS; CATS; CELL LINE; IMMUNODEFICIENCY VIRUS, FELINE; LEUKOCYTES, MONONUCLEAR; MOLECULAR SEQUENCE DATA; MUTATION; PHYLOGENY; VARIATION (GENETICS); VIETNAM; VIRAL ENVELOPE PROTEINS;

ANIMALIA; DNA VIRUSES; FELIDAE; FELINE IMMUNODEFICIENCY VIRUS; PROKARYOTA;

EID: 0345701202     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-002-0954-8     Document Type: Article

References (30)

1. Bachmann MH, Mathiason-Dubard C, Learn GH, Rodrigo AG, Sodora DL, Mazzetti P, Hoover EA, Mullins JI (1997) Genetic diversity of feline immunodeficiency virus: dual infection, recombination, and distinct evolutionary rates among envelope sequence clades. J Virol 71: 4241-4253
2. Bendinelli M, Pistello M, Lombardi S, Poli A, Garzelli C, Matteucci D, Ceccherini-Nelli L, Malvaldi G, Tozzini F (1995) Feline immunodeficiency virus: an interesting model for AIDS studies and an important cat pathogen. Clin Microbiol Rev 8: 87-112
3. Carpenter MA, Brown EW, MacDonald DW, O'Brien SJ (1998) Phylogeographic patterns of feline immunodeficiency virus genetic diversity in the domestic cats. Virology 251: 234-243
4. Diehl LJ, Mathiason-Dubard CK, O'Neil LL, Obert LA, Hoover EA (1995) Induction of accelerated feline immunodeficiency virus disease by acute-phase virus passage. J Virol 69: 6149-6157
5. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791
6. Gotch F (1998) Cross-clade T cell recognition of HIV-1. Curr Opin Immunol 10: 388-392
7. Greene WK, Meers J, Chadwick B, Carnegie PR, Robinson WF (1993) Nucleotide sequences of Australian isolates of the feline irnmunodeficiency virus: comparison with other feline lentiviruses. Arch Virol 132: 369-379
8. Inada G, Miyazawa T, Inoshima Y, Kohmoto M, Ikeda Y, Liu C-H, Lin JA, Kuo T-F, Mikami T (1997) Phylogenetic analysis of feline immunodeficiency virus isolated from cats in Taiwan. Arch Virol 142: 1459-1467
9. Kakinuma S, Motokawa K, Hohdatu T, Yamamoto JK, Koyama H, Hashimoto H (1995) Nucleotide sequence of feline immunodeficiency virus: classification of Japanese isolates into two subtypes which are distinct from non-Japanese subtypes. J Virol 69: 3639-3646
10. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120
11. Li W-H (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J Mol Evol 36: 96-99
12. Li W-H, Tanimura M, Sharp PM (1988) Rates and dates of divergence between AIDS virus nucleotide sequence. Mol Biol Evol 5: 313-330
13. Li W-H, Wu C-I, Luo C-C (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 2: 150-174
14. Miyazawa T, Furuya T, Itagaki S, Tohya Y, Nakano K, Takahashi E, Mikami T (1989) Preliminary comparisons of the biological properties of two strains of feline immunodeficiency virus (FIV) isolated in Japan with FIV Petaluma strain isolated in the United States. Arch Virol 108: 59-68
15. Miyazawa T, Furuya T, Itagaki S, Tohya Y, Takahashi E, Mikami T (1989) Establishment of a feline T-lymphoblastoid cell line highly sensitive for replication of feline immunodeficiency virus. Arch Virol 108: 131-135
16. Miyazawa T, Ikeda Y, Maeda K, Horimoto T, Tohya Y, Mochizuki M, Vu D, Vu GD, Cu DX, Ono K, Takahashi E, Mikami T (1998) Seroepidemiological survey of feline retrovirus infections in domestic and leopard cats in northern Vietnam in 1997. J Vet Med Sci 60: 1273-1275
17. Moore JP, Parren PWHI, Burton DR (2001) Genetic subtypes, humoral immunity, and human immunodeficiency virus type 1 vaccine development. J Virol 75: 5721-5729
18. Nakamura K, Miyazawa T, Ikeda Y, Sato E, Nishimura Y, Nguyen NTP, Takahashi E, Mochizuki M, Mikami T (2000) Contrastive prevalence of feline retrovirus infections between northern and southern Vietnam. J Vet Med Sci 62: 921-923
19. Nishimura Y, Goto Y, Pang H, Endo Y, Mizuno T, Momoi Y, Watari T, Tsujimoto H, Hasegawa A (1998) Genetic heterogeneity of env gene of feline immunodeficiency virus obtained from multiple districts in Japan. Virus Res 57: 101-112
20. Nishimura Y, Goto Y, Yoneda K, Endo Y, Mizuno T, Hamachi M, Maruyama H, Kinoshita H, Koga S, Komori M, Fushuku S, Ushinohama K, Akuzawa M, Watari T, Hasegawa A, Tsujimoto H (1999) Interspecies transmission of feline immunodeficiency virus from the domestic cat to the Tsushima cat (Felis bengalensis euptilura) in the wild. J Virol 73: 7916-7921
21. Pancino G, Fossati I, Chappey C, Castelot S, Hurtrel B, Moraillon A, Klatzmann D, Sonigo P (1993) Structure and variations of feline immunodeficiency virus envelope glycoproteins. Virology 192: 659-662
22. Pecoraro MR, Tomonaga K, Miyazawa T, Kawaguchi Y, Sugita S, Tohya Y, Kai C, Etcheverrigaray ME, Mikami T (1996) Genetic diversity of Argentine isolates of feline immunodeficiency virus. J Gen Virol 77: 2031-2035
23. Pedersen NC, Ho EW, Brown ML, Yamamoto JK (1987) Isolation of a T-lymphotropic virus from domestic cats with an immunodeficiency-like syndrome. Science 235: 790-793
24. Pistello M, Cammarota G, Nicoletti E, Matteucci D, Curcio M, Del Mauro D, Bendinelli M (1997) Analysis of the genetic diversity and phylogenetic relationship of Italian isolates of feline immunodeficiency virus indicates a high prevalence and heterogeneity of subtype B. J Gen Virol 78: 2247-2257
25. Rigby MA, Holmes EC, Pistello M, Mackay A, Leigh Brown A J, Neil JC ( 1993) Evolution of structural proteins of feline immunodeficiency virus: molecular epidemiology and evidence of selection for change. J Gen Virol 74: 425-436
26. Saitou N, Nei M (1987) The neighbor-joining methods: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
27. Sodora DL, Shpaer EG, Kitchell BE, Dow SW, Hoover EA, Mullins JI (1994) Identification of three feline immunodeficiency virus (FIV) env gene subtypes and comparison of the FIV and human immunodeficiency virus type 1 evolutionary patterns. J Virol 68: 2230-2238
28. Uema M, Ikeda Y, Miyazawa T, Lin JA, Chen M-C, Kuo T-F, Kai C, Mikami T, Takahashi E (1999) Feline immunodeficiency virus subtype C is prevalent in northern part of Taiwan. J Vet Med Sci 61: 197-199
29. Willey RL, Rutledge RA, Dias S, Folks T, Theodore T, Buckler CE, Martin MA (1986) Identification of conserved and divergent domains within the envelope gene of the acquired immunodeficiency syndrome retrovirus. Proc Natl Acad Sci USA 83: 5038-5042
30. Yamamoto JK, Hansen H, Ho EW, Morishita TY, Okuda T, Sawa TR, Nakamura RM, Pedersen NC (1989) Epidemiologic and clinical aspects of feline immunodeficiency virus infection in cats from the continental United States and Canada and possible mode of transmission. J Am Vet Med Assoc 194: 213-220