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Volumn 71, Issue 6, 1997, Pages 4241-4253

Genetic diversity of feline immunodeficiency virus: Dual infection, recombination, and distinct evolutionary rates among envelope sequence clades

Author keywords

[No Author keywords available]

Indexed keywords

HETERODUPLEX;

EID: 0030925278     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.71.6.4241-4253.1997     Document Type: Article
Times cited : (130)

References (66)
  • 1
    • 0028029576 scopus 로고
    • Rapid genetic characterization of HIV-1 from four WHO-sponsored vaccine evaluation sites using a heteroduplex mobility assay
    • Bachmann, M. H., E. L. Delwart, E. G. Shpaer, P. Lingenfelter, R. Singal, J. I. Mullins, and the WHO Network on HIV Isolation and Characterization. 1994. Rapid genetic characterization of HIV-1 from four WHO-sponsored vaccine evaluation sites using a heteroduplex mobility assay. AIDS Res. Hum. Retroviruses 10:1343-1351.
    • (1994) AIDS Res. Hum. Retroviruses , vol.10 , pp. 1343-1351
    • Bachmann, M.H.1    Delwart, E.L.2    Shpaer, E.G.3    Lingenfelter, P.4    Singal, R.5    Mullins, J.I.6
  • 3
    • 0027994523 scopus 로고
    • A lion lentivirus related to feline immunodeficiency virus: Epidemiologic and phylogenetic aspects
    • Brown, E. W., N. Yuhki, C. Packer, and S. J. O'Brien. 1994. A lion lentivirus related to feline immunodeficiency virus: epidemiologic and phylogenetic aspects. J. Virol. 68:5953-5968.
    • (1994) J. Virol. , vol.68 , pp. 5953-5968
    • Brown, E.W.1    Yuhki, N.2    Packer, C.3    O'Brien, S.J.4
  • 5
    • 0024459455 scopus 로고
    • Infection of peritoneal macrophages in vitro and in vivo with feline immunodeficiency virus
    • Brunner, D., and N. C. Pedersen. 1989. Infection of peritoneal macrophages in vitro and in vivo with feline immunodeficiency virus. J. Virol. 63:5483-5488.
    • (1989) J. Virol. , vol.63 , pp. 5483-5488
    • Brunner, D.1    Pedersen, N.C.2
  • 6
    • 0028943178 scopus 로고
    • Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay
    • Delwart, E. L., B. Herring, A. G. Rodrigo, and J. I. Mullins. 1995. Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay. PCR Methods Appl. 4:S202-S216.
    • (1995) PCR Methods Appl. , vol.4
    • Delwart, E.L.1    Herring, B.2    Rodrigo, A.G.3    Mullins, J.I.4
  • 7
    • 0027980442 scopus 로고
    • Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays
    • Delwart, E. L., H. W. Sheppard, B. D. Walker, J. Goudsmit, and J. I. Mullins. 1994. Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays. J. Virol. 68:6672-6683.
    • (1994) J. Virol. , vol.68 , pp. 6672-6683
    • Delwart, E.L.1    Sheppard, H.W.2    Walker, B.D.3    Goudsmit, J.4    Mullins, J.I.5
  • 10
    • 0029098851 scopus 로고
    • Induction of accelerated feline immunodeficiency virus disease by acute-phase virus passage
    • Diehl, L. J., C. K. Mathiason-Dubard, L. L. O'Neil, L. A. Obert, and E. A. Hoover. 1995. Induction of accelerated feline immunodeficiency virus disease by acute-phase virus passage. J. Virol. 69:6149-6157.
    • (1995) J. Virol. , vol.69 , pp. 6149-6157
    • Diehl, L.J.1    Mathiason-Dubard, C.K.2    O'Neil, L.L.3    Obert, L.A.4    Hoover, E.A.5
  • 12
    • 0027964486 scopus 로고
    • Development of clinical disease in cats experimentally infected with feline immunodeficiency virus
    • English, R. V., P. Nelson, C. M. Johnson, M. Nasisse, W. A. Tompkins, and M. B. Tompkins. 1994. Development of clinical disease in cats experimentally infected with feline immunodeficiency virus. J. Infect. Dis. 170:543-552.
    • (1994) J. Infect. Dis. , vol.170 , pp. 543-552
    • English, R.V.1    Nelson, P.2    Johnson, C.M.3    Nasisse, M.4    Tompkins, W.A.5    Tompkins, M.B.6
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package
    • Felsenstein, J. 1989. PHYLIP - phylogeny inference package. Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 15
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees
    • Fitch, W. M., and E. Margoliash. 1967. Construction of phylogenetic trees. Science 155:279-284.
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 16
    • 0028450973 scopus 로고
    • Epidemiology of FeLV and FIV infection in the Federal Republic of Germany
    • Fuchs, A., L. Binzel, and M. Lonsdorfer. 1994. [Epidemiology of FeLV and FIV infection in the Federal Republic of Germany.] Tieraerztl. Prax. 22:273-277.
    • (1994) Tieraerztl. Prax. , vol.22 , pp. 273-277
    • Fuchs, A.1    Binzel, L.2    Lonsdorfer, M.3
  • 17
    • 0028063444 scopus 로고
    • Genetic diversity of human immunodeficiency virus type 2: Evidence for distinct sequence subtypes with differences in virus biology
    • Gao, F., L. Yue, D. L. Robertson, S. C. Hill, H. Hui, R. J. Biggar, A. E. Neequaye, T. M. Whelan, D. D. Ho, G. M. Shaw, et al. 1994. Genetic diversity of human immunodeficiency virus type 2: evidence for distinct sequence subtypes with differences in virus biology. J. Virol. 68:7433-7447.
    • (1994) J. Virol. , vol.68 , pp. 7433-7447
    • Gao, F.1    Yue, L.2    Robertson, D.L.3    Hill, S.C.4    Hui, H.5    Biggar, R.J.6    Neequaye, A.E.7    Whelan, T.M.8    Ho, D.D.9    Shaw, G.M.10
  • 18
    • 0029940354 scopus 로고    scopus 로고
    • Viral counts count in HIV infection
    • Ho, D. 1996. Viral counts count in HIV infection. Science 272:1124-1125.
    • (1996) Science , vol.272 , pp. 1124-1125
    • Ho, D.1
  • 19
    • 0028874048 scopus 로고
    • Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection
    • Ho, D. D., A. U. Neumann, A. S. Perelson, W. Chen, J. M. Leonard, and M. Markowitz. 1995. Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection. Nature 373:123-126.
    • (1995) Nature , vol.373 , pp. 123-126
    • Ho, D.D.1    Neumann, A.U.2    Perelson, A.S.3    Chen, W.4    Leonard, J.M.5    Markowitz, M.6
  • 20
    • 0028831463 scopus 로고
    • Protection against homologous but not heterologous challenge induced by inactivated feline immunodeficiency virus vaccines
    • Hosie, M. J., R. Osborne, J. K. Yamamoto, J. C. Neil, and O. Jarrett. 1995. Protection against homologous but not heterologous challenge induced by inactivated feline immunodeficiency virus vaccines. J. Virol. 69:1253-1255.
    • (1995) J. Virol. , vol.69 , pp. 1253-1255
    • Hosie, M.J.1    Osborne, R.2    Yamamoto, J.K.3    Neil, J.C.4    Jarrett, O.5
  • 21
    • 0024965651 scopus 로고
    • Prevalence of feline leukaemia virus and antibodies to feline immunodeficiency virus in cats in the United Kingdom
    • Hosie, M. J., C. Robertson, and O. Jarrett. 1989. Prevalence of feline leukaemia virus and antibodies to feline immunodeficiency virus in cats in the United Kingdom. Vet. Rec. 125:293-297.
    • (1989) Vet. Rec. , vol.125 , pp. 293-297
    • Hosie, M.J.1    Robertson, C.2    Jarrett, O.3
  • 23
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro (ed.), Academic Press, New York. N.Y.
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism. Academic Press, New York. N.Y.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 24
    • 0029012375 scopus 로고
    • Nucleotide sequence of feline immunodeficiency virus: Classification of Japanese isolates into two subtypes which are distinct from non-Japanese subtypes
    • Kakinuma, S., K. Motokawa, T. Hohdatsu, J. K. Yamamoto, H. Koyama, and H. Hashimoto. 1995. Nucleotide sequence of feline immunodeficiency virus: classification of Japanese isolates into two subtypes which are distinct from non-Japanese subtypes. J. Virol. 69:3639-3646.
    • (1995) J. Virol. , vol.69 , pp. 3639-3646
    • Kakinuma, S.1    Motokawa, K.2    Hohdatsu, T.3    Yamamoto, J.K.4    Koyama, H.5    Hashimoto, H.6
  • 25
    • 0025666927 scopus 로고
    • Generation of diversity in retroviruses
    • Katz, R. A., and A. M. Skalka. 1990. Generation of diversity in retroviruses. Annu. Rev. Genet. 24:409-445.
    • (1990) Annu. Rev. Genet. , vol.24 , pp. 409-445
    • Katz, R.A.1    Skalka, A.M.2
  • 27
    • 0028294049 scopus 로고
    • MEGA: Molecular evolutionary genetic analysis for microcomputers
    • Kumar, S., K. Tamura, and M. Nei. 1993. MEGA: molecular evolutionary genetic analysis for microcomputers. Comput. Appl. Biosci. 10:189-191.
    • (1993) Comput. Appl. Biosci. , vol.10 , pp. 189-191
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 28
    • 0027933895 scopus 로고
    • Nucleotide sequence analysis of puma lentivirus (PLV-14): Genomic organization and relationship to other lentiviruses
    • Langley, R. J., V. M. Hirsch, S. J. O'Brien, D. Adger-Johnson, R. M. Goeken, and R. A. Olmsted. 1994. Nucleotide sequence analysis of puma lentivirus (PLV-14): genomic organization and relationship to other lentiviruses. Virology 202:853-864.
    • (1994) Virology , vol.202 , pp. 853-864
    • Langley, R.J.1    Hirsch, V.M.2    O'Brien, S.J.3    Adger-Johnson, D.4    Goeken, R.M.5    Olmsted, R.A.6
  • 30
    • 0026021455 scopus 로고
    • Molecular cloning of a novel isolate of feline immunodeficiency virus biologically and genetically different from the original U.S. isolate
    • Miyazawa, T., M. Fukasawa, A. Hasegawa, N. Maki, K. Ikuta, E. Takahashi, M. Hayami, and T. Mikami. 1991. Molecular cloning of a novel isolate of feline immunodeficiency virus biologically and genetically different from the original U.S. isolate. J. Virol. 65:1572-1577.
    • (1991) J. Virol. , vol.65 , pp. 1572-1577
    • Miyazawa, T.1    Fukasawa, M.2    Hasegawa, A.3    Maki, N.4    Ikuta, K.5    Takahashi, E.6    Hayami, M.7    Mikami, T.8
  • 31
    • 0025860631 scopus 로고
    • Identification of conserved and variable regions in the envelope glycoprotein sequences of two feline immunodeficiency viruses isolated in Zurich, Switzerland
    • Morikawa, S., H. Lutz, A. Aubert, and D. H. Bishop. 1991. Identification of conserved and variable regions in the envelope glycoprotein sequences of two feline immunodeficiency viruses isolated in Zurich, Switzerland. Virus Res. 21:53-63.
    • (1991) Virus Res. , vol.21 , pp. 53-63
    • Morikawa, S.1    Lutz, H.2    Aubert, A.3    Bishop, D.H.4
  • 33
    • 0027350115 scopus 로고
    • Feline CD4 molecules expressed on feline non-lymphoid cell lines are not enough for productive infection of highly lymphotropic feline immunodeficiency virus isolates
    • Norimine, J., T. Miyazawa, Y. Kawaguchi, K. Tomonoaga, Y.-S. Shin, T. Toyosaki, M. Kohmoto, M. Niikura, Y. Tohya, and T. Mikami. 1993. Feline CD4 molecules expressed on feline non-lymphoid cell lines are not enough for productive infection of highly lymphotropic feline immunodeficiency virus isolates. Arch. Virol. 130:171-178.
    • (1993) Arch. Virol. , vol.130 , pp. 171-178
    • Norimine, J.1    Miyazawa, T.2    Kawaguchi, Y.3    Tomonoaga, K.4    Shin, Y.-S.5    Toyosaki, T.6    Kohmoto, M.7    Niikura, M.8    Tohya, Y.9    Mikami, T.10
  • 34
  • 35
    • 0024366204 scopus 로고
    • Nucleotide sequence analysis of feline immunodeficiency virus: Genome organization and relationship to other lentiviruses
    • Olmsted, R. A., V. M. Hirsch, R. H. Purcell, and P. R. Johnson. 1989. Nucleotide sequence analysis of feline immunodeficiency virus: genome organization and relationship to other lentiviruses. Proc. Natl. Acad. Sci. USA 86:8088-8092.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 8088-8092
    • Olmsted, R.A.1    Hirsch, V.M.2    Purcell, R.H.3    Johnson, P.R.4
  • 38
    • 0023137671 scopus 로고
    • Isolation of a T-lymphotropic virus from domestic cats with an immunodeficiency-like syndrome
    • Pedersen, N. C., E. W. Ho, M. L. Brown, and J. K. Yamamoto. 1987. Isolation of a T-lymphotropic virus from domestic cats with an immunodeficiency-like syndrome. Science 235:790-793.
    • (1987) Science , vol.235 , pp. 790-793
    • Pedersen, N.C.1    Ho, E.W.2    Brown, M.L.3    Yamamoto, J.K.4
  • 40
    • 0025053644 scopus 로고
    • Comparison of two host cell range variants of feline immunodeficiency virus
    • Phillips, T. R., R. L. Talbott, C. Lamont, S. Muir, K. Lovelace, and J. H. Elder. 1990. Comparison of two host cell range variants of feline immunodeficiency virus. J. Virol. 64:4605-4613.
    • (1990) J. Virol. , vol.64 , pp. 4605-4613
    • Phillips, T.R.1    Talbott, R.L.2    Lamont, C.3    Muir, S.4    Lovelace, K.5    Elder, J.H.6
  • 42
    • 0027420109 scopus 로고
    • Evolution of structural proteins of feline immunodeficiency virus: Molecular epidemiology and evidence of selection for change
    • Rigby, M. A., E. C. Holmes, M. Pistello, A. Mackay, A. J. Leigh Brown, and J. C. Neil. 1993. Evolution of structural proteins of feline immunodeficiency virus: molecular epidemiology and evidence of selection for change. J. Gen. Virol. 74:425-436.
    • (1993) J. Gen. Virol. , vol.74 , pp. 425-436
    • Rigby, M.A.1    Holmes, E.C.2    Pistello, M.3    Mackay, A.4    Leigh Brown, A.J.5    Neil, J.C.6
  • 45
    • 1842308781 scopus 로고    scopus 로고
    • Unpublished data
    • Rodrigo, A., et al. Unpublished data.
    • Rodrigo, A.1
  • 46
    • 0028100982 scopus 로고
    • Identification of human immunodeficiency virus type 1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals in Brazil
    • Sabino, E. C., E. G. Shpaer, M. G. Morgado, B. T. M. Korber, R. Diaz, V. Bongertz, S. Cavalcante, B. Galvao-Castro, J. I. Mullins, and A. Mayer. 1994. Identification of human immunodeficiency virus type 1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals in Brazil. J. Virol. 68:6340-6346.
    • (1994) J. Virol. , vol.68 , pp. 6340-6346
    • Sabino, E.C.1    Shpaer, E.G.2    Morgado, M.G.3    Korber, B.T.M.4    Diaz, R.5    Bongertz, V.6    Cavalcante, S.7    Galvao-Castro, B.8    Mullins, J.I.9    Mayer, A.10
  • 47
    • 0023375195 scopus 로고
    • The neighbour-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-125.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-1125
    • Saitou, N.1    Nei, M.2
  • 48
    • 0013653779 scopus 로고
    • Genotyping of HIV-1
    • G. Myers, B. Korber, S. Wain-Hobson, R. F. Smith, and G. N. Pavlakis (ed.), HIV Sequence Database, Los Alamos National Laboratory, Los Alamos, N.Mex.
    • Salminen, M. O., J. K. Carr, D. S. Burke, and F. E. McCutchan. 1995. Genotyping of HIV-1, p. III30-III33. In G. Myers, B. Korber, S. Wain-Hobson, R. F. Smith, and G. N. Pavlakis (ed.), Human retroviruses and AIDS 1995. A compilation and analysis of nucleic acid and amino acid sequences. HIV Sequence Database, Los Alamos National Laboratory, Los Alamos, N.Mex. (http://hiv-web.lanl.gov/HIV_WEB/HTML_FILES/HIVonLine.html)
    • (1995) Human Retroviruses and AIDS 1995. A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences
    • Salminen, M.O.1    Carr, J.K.2    Burke, D.S.3    McCutchan, F.E.4
  • 50
    • 0027312156 scopus 로고
    • Rates of amino acid change in the envelope protein correlate with the pathogenicity of primate lentiviruses
    • Shpaer, E. G., and J. I. Mullins. 1993. Rates of amino acid change in the envelope protein correlate with the pathogenicity of primate lentiviruses. J. Mol. Evol. 37:57-65.
    • (1993) J. Mol. Evol. , vol.37 , pp. 57-65
    • Shpaer, E.G.1    Mullins, J.I.2
  • 51
    • 0026513841 scopus 로고
    • Isolation and partial characterization of infectious molecular clones of feline immunodeficiency virus obtained directly from bone marrow DNA of a naturally infected cat
    • Siebelink, K. H., I. H. Chu, G. F. Rimmelzwaan, K. Weijer, A. D. Osterhaus, and M. L. Bosch. 1992. Isolation and partial characterization of infectious molecular clones of feline immunodeficiency virus obtained directly from bone marrow DNA of a naturally infected cat. J. Virol. 66:1091-1097.
    • (1992) J. Virol. , vol.66 , pp. 1091-1097
    • Siebelink, K.H.1    Chu, I.H.2    Rimmelzwaan, G.F.3    Weijer, K.4    Osterhaus, A.D.5    Bosch, M.L.6
  • 52
    • 0028884471 scopus 로고
    • A computer program designed to rapidly screen for HIV-1 intersubtype recombinant sequences
    • Siepel, A. C., A. L. Halpern, C. Macken, and B. T. M. Korber. 1995. A computer program designed to rapidly screen for HIV-1 intersubtype recombinant sequences. AIDS Res. Hum. Retroviruses 11:1413-1416.
    • (1995) AIDS Res. Hum. Retroviruses , vol.11 , pp. 1413-1416
    • Siepel, A.C.1    Halpern, A.L.2    Macken, C.3    Korber, B.T.M.4
  • 53
    • 0028598812 scopus 로고
    • The Genetic Data Environment: An expandable GUI for multiple sequence analysis
    • Smith, S. W., R. Overbeek, C. R. Woese, W. Gilbert, and P. M. Gillevet. 1994. The Genetic Data Environment: An expandable GUI for multiple sequence analysis. CABIOS 10:671-675.
    • (1994) CABIOS , vol.10 , pp. 671-675
    • Smith, S.W.1    Overbeek, R.2    Woese, C.R.3    Gilbert, W.4    Gillevet, P.M.5
  • 57
    • 0028210963 scopus 로고
    • Identification of three feline immunodeficiency virus (FIV) env gene subtypes and comparison of the FIV and human immunodeficiency virus type 1 evolutionary patterns
    • Sodora, D. L., E. G. Shpaer, B. E. Kitchell, S. W. Dow, E. A. Hoover, and J. I. Mullins. 1994. Identification of three feline immunodeficiency virus (FIV) env gene subtypes and comparison of the FIV and human immunodeficiency virus type 1 evolutionary patterns. J. Virol. 68:2230-2238.
    • (1994) J. Virol. , vol.68 , pp. 2230-2238
    • Sodora, D.L.1    Shpaer, E.G.2    Kitchell, B.E.3    Dow, S.W.4    Hoover, E.A.5    Mullins, J.I.6
  • 59
    • 0025959787 scopus 로고
    • Sex and recombination in retroviruses
    • Temin, H. M. 1991. Sex and recombination in retroviruses. Trends Genet. 7:71-74.
    • (1991) Trends Genet. , vol.7 , pp. 71-74
    • Temin, H.M.1
  • 60
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 61
    • 0027177219 scopus 로고
    • Post-translational processing of the feline immunodeficiency virus envelope precursor protein
    • Verschoor, E. J., E. G. Hulskotte, J. Ederveen, M. J. Koolen, M. C. Horzinek, and P. J. Rottier. 1993. Post-translational processing of the feline immunodeficiency virus envelope precursor protein. Virology 193:433-438.
    • (1993) Virology , vol.193 , pp. 433-438
    • Verschoor, E.J.1    Hulskotte, E.G.2    Ederveen, J.3    Koolen, M.J.4    Horzinek, M.C.5    Rottier, P.J.6
  • 64
    • 0024969273 scopus 로고
    • Epidemiologic and clinical aspects of feline immunodeficiency virus infection in cats from the continental United States and Canada and possible mode of transmission
    • Yamamoto, J. K., H. Hansen, E. W. Ho, T. Y. Morishita, T. Okuda, T. R. Sawa, R. M. Nakamura, and N. C. Pedersen. 1989. Epidemiologic and clinical aspects of feline immunodeficiency virus infection in cats from the continental United States and Canada and possible mode of transmission. J. Am. Vet. Med. Assoc. 194(2):213-220.
    • (1989) J. Am. Vet. Med. Assoc. , vol.194 , Issue.2 , pp. 213-220
    • Yamamoto, J.K.1    Hansen, H.2    Ho, E.W.3    Morishita, T.Y.4    Okuda, T.5    Sawa, T.R.6    Nakamura, R.M.7    Pedersen, N.C.8


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