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Volumn , Issue , 2003, Pages 2-9

Pairwise protein structure alignment based on an orientation-independent representation of the backbone geometry

Author keywords

Dynamic programming; Frobenius norm; Rigid motion; Root mean squared deviation; Singular value decomposition; Structure alignment

Indexed keywords

ALGORITHMS; DYNAMIC PROGRAMMING; MOLECULAR STRUCTURE; MONTE CARLO METHODS; PROTEINS; VECTORS;

EID: 0345529118     PISSN: 10636730     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (2)

References (22)
  • 5
    • 0028072364 scopus 로고
    • Pseudodihedrals: Simplified protein backbone representation with knowledge-based energy
    • R.S. Dewitte, and E.I. Shakhnovich. Pseudodihedrals: Simplified protein backbone representation with knowledge-based energy. Protein Science, 3, 1994, pp. 1570-1581.
    • (1994) Protein Science , vol.3 , pp. 1570-1581
    • Dewitte, R.S.1    Shakhnovich, E.I.2
  • 7
    • 0029921425 scopus 로고    scopus 로고
    • A surface of minimum area metric for the structural comparison of proteins
    • A. Falicov, and P.E. Cohen. A surface of minimum area metric for the structural comparison of proteins. Journal of Molecular Biology, 258, 1996, pp. 871-892.
    • (1996) Journal of Molecular Biology , vol.258 , pp. 871-892
    • Falicov, A.1    Cohen, P.E.2
  • 8
    • 84969049944 scopus 로고
    • 3D Substructure Matching in Protein Molecules
    • Lecture Notes in Computer Science 644, Springer-Verlag, New York
    • D. Fischer, R. Nussinov, and H. Wolfson. 3D Substructure Matching in Protein Molecules, Proc. 3rd Intl. Symp. Combinatorial Pattern Matching, Lecture Notes in Computer Science 644, Springer-Verlag, New York, 1992, pp. 136-150.
    • (1992) Proc. 3rd Intl. Symp. Combinatorial Pattern Matching , pp. 136-150
    • Fischer, D.1    Nussinov, R.2    Wolfson, H.3
  • 12
    • 0027440362 scopus 로고
    • Protein Structure Comparison by Alignment of Distance Matrices
    • L. Holm, and C. Sander. Protein Structure Comparison by Alignment of Distance Matrices. Journal of Molecular Biology, 233, 1993, pp. 123-138.
    • (1993) Journal of Molecular Biology , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 13
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • L. Holm, and C. Sander. Mapping the protein universe. Science, 273, 1996, pp. 595-602.
    • (1996) Science , vol.273 , pp. 595-602
    • Holm, L.1    Sander, C.2
  • 14
    • 0029918694 scopus 로고    scopus 로고
    • The FSSP database: Fold classification based on structure-structure alignment of proteins
    • L. Holm, and C. Sander. The FSSP database: Fold classification based on structure-structure alignment of proteins. Nucleic Acids Research, 24(1), 1996. pp. 206-209.
    • (1996) Nucleic Acids Research , vol.24 , Issue.1 , pp. 206-209
    • Holm, L.1    Sander, C.2
  • 15
    • 0025270037 scopus 로고
    • Phylogenetic relationships from three-dimensional structures of proteins
    • M.S. Johnson, A. Sali, and T.L. Blundell. Phylogenetic relationships from three-dimensional structures of proteins. Methods in Enzymology, 183, 1990, pp. 670-690.
    • (1990) Methods in Enzymology , vol.183 , pp. 670-690
    • Johnson, M.S.1    Sali, A.2    Blundell, T.L.3
  • 16
    • 0009171171 scopus 로고
    • A toolkit for computational molecular biology. II. On the optimal superposition of two sets of coordinates
    • A.M. Lesk. A toolkit for computational molecular biology. II. On the optimal superposition of two sets of coordinates. Acta Cryst, A42, 1986, pp. 110-113.
    • (1986) Acta Cryst , vol.A42 , pp. 110-113
    • Lesk, A.M.1
  • 17
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • A. Murzin, S.E. Brenner, T. Hubbard. and C. Chothia. SCOP: A structural classification of proteins database for the investigation of sequences and structures. Journal of Molecular Biology, 247, 1995, pp. 536-540.
    • (1995) Journal of Molecular Biology , vol.247 , pp. 536-540
    • Murzin, A.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 18
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • I.N. Shindyalov, and P.E. Bourne. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Engineering., 11, 1998, pp. 739-747.
    • (1998) Protein Engineering , vol.11 , pp. 739-747
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 19
    • 0030628304 scopus 로고    scopus 로고
    • Hierarchical protein structure superposition using both secondary structure and atomic representation
    • A.P. Singh, and D.L. Brutlag. Hierarchical protein structure superposition using both secondary structure and atomic representation. Proc. Intelligent Systems for Molecular Biology, pp. 284-293, 1997.
    • (1997) Proc. Intelligent Systems for Molecular Biology , pp. 284-293
    • Singh, A.P.1    Brutlag, D.L.2
  • 20
    • 0033011876 scopus 로고    scopus 로고
    • Protein structure comparison using iterated double dynamic programming
    • W.R. Taylor. Protein structure comparison using iterated double dynamic programming. Protein Science, 8, 1999, pp. 654-665.
    • (1999) Protein Science , vol.8 , pp. 654-665
    • Taylor, W.R.1
  • 22
    • 0344145319 scopus 로고    scopus 로고
    • Pairwise protein structure alignment based on an orientation-independent representation of the backbone geometry
    • University of Minnesota, Department of Computer Science and Engineering
    • J. Ye, R. Janardan, and S. Liu. Pairwise protein structure alignment based on an orientation-independent representation of the backbone geometry. Technical Report 03-001, University of Minnesota, Department of Computer Science and Engineering, 2003. (http://www.cs.umn.edu/̃jieping/Research).
    • (2003) Technical Report , vol.3 , Issue.1
    • Ye, J.1    Janardan, R.2    Liu, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.