Long-term temporal changes of genetic composition in brown trout (Salmo trutta L.) populations inhabiting an unstable environment

Molecular Ecology

Volumn 12, Issue 11, 2003, Pages 3123-3135

  Østergaard, Siri ^a,b   Hansen, Michael M ^b   Loeschcke, Volker ^a   Nielsen, Einar E ^b  

^a AARHUS UNIVERSITY   (Denmark)

^b TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

Effective population size; Historical samples; Metapopulation; Microsatellite DNA; Salmo trutta; Spatio temporal genetic differentiation

Indexed keywords

ANIMALS; DENMARK; GENE FREQUENCY; GENETICS, POPULATION; GEOGRAPHY; HETEROZYGOTE; LIKELIHOOD FUNCTIONS; MICROSATELLITE REPEATS; POPULATION DYNAMICS; PRINCIPAL COMPONENT ANALYSIS; RIVERS; TROUT; VARIATION (GENETICS);

SALMO; SALMO TRUTTA; SALMONIDAE;

EID: 0345017864     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01976.x     Document Type: Article

References (49)

1. Altukhov YP, Salmenkova EA, Omelchenko VT (2000) Salmonid Fishes. Population Biology, Genetics and Management. Blackwell Science Ltd, Oxford.
2. e from temporally spaced samples. Genetics, 158, 2109-2118.
3. Barton NH, Whitlock MC (1997) The evolution of metapopulations. In: Metapopulation Biology, Ecology, Genetics, and Evolution (eds Hanski I, Gilpin ME), pp. 183-210. Academic Press, San Diego, CA.
4. Berthier P, Beaumont MA, Cornuet J-M, Luikart G (2002) Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: a genealogical approach. Genetics, 160, 741-751.
5. Cornuet JM, Piry S, Luikart G, Estoup A, Solignac M (1999) Comparison of methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics, 153, 1989-2000.
6. Elliot JM (1994) Quantitative Ecology and the Brown Trout. Oxford University Press, New York.
7. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theoretical and Applied Genetics, 92, 832-839.
8. Eriksson O (1996) Regional dynamics of plants: a review of evidence for remnant, source-sink and metapopulations. Oikos, 77, 248-258.
9. n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Heredity, 71, 488-496.
10. Estoup A, Largiander CR, Perrot E, Chowrout D (1996) Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Molecular Marine Biology and Biotechnology, 5, 295-298.
11. Ferguson A (1989) Genetic differences among brown trout, Salmo trutta, stocks and their importance for the conservation and management of the species. Freshwater Biology, 21, 35-46.
12. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (Version 2.9.3). Available from http://www.unil.ch/izea/ softwares/fstat.html.
13. Guo SW, Thompson EA (1992) Performing the exact test for Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
14. Hansen MM (2002) Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples. Molecular Ecology, 11, 1003-1015.
15. Hansen MM, Nielsen EE, Mensberg K-LD (1997) The problem of sampling families rather than populations: relatedness among individuals in samples of juvenile brown trout (Salmo trutta). Molecular Ecology, 6, 469-474.
16. Hansen MM, Kenchington E, Nielsen EE (2001) Assigning individual fish to populations using microsatellite DNA markers. Fish and Fisheries, 2, 93-112.
17. Hansen MM, Ruzzante D, Nielsen EE, Bekkevold D, Mensberg K-LD (2002) Long-term effective population sizes, temporal stability of genetic composition and potential for local adaptation in anadromous brown trout (Salmo truttta) populations. Molecular Ecology, 11, 2523-2535.
18. Hanski I (1991) Single-species metapopulation dynamics. Brief history and conceptual domain. Biological Journal of the Linnean Society, 42, 17-38.
19. Hanski I, Simberloff D (1997) The metapopulation approach, its history, conceptual domain, and application to conservation. In: Metapopulation Biology, Ecology, Genetics, and Evolution (eds Hanski I, Gilpin ME), pp. 183-210. Academic Press, San Diego, CA.
20. Heath DD, Busch C, Kelly J, Atagi DY (2002) Temporal change in genetic structure and effective population size in steelhead trout (Oncorhynchus mykiss). Molecular Ecology, 11, 197-214.
21. Hindar K, Jonsson B, Ryman N, Ståhl G (1991) Genetic relationships among landlocked, resident, and anadromous brown trout, Salmo trutta L. Heredity, 66, 83-91.
22. Holyoak M, Ray C (1999) A roadmap for metapopulation reseach. Ecology Letters, 2, 273-275.
23. Hutchinson WF, Carvalho GR, Rogers SI (1999) A nondestructive technique for the recovery of DNA from dried fish otoliths for subsequent molecular genetic analysis. Molecular Ecology, 8, 893-894.
24. Jorde PE, Ryman N (1995) Temporal allele frequency change and estimation of effective size in populations with overlapping generations. Genetics, 139, 1077-1090.
25. Laikre L, Järvi T, Johansson L, et al (2002) Spatial and temporal population structure of sea trout in the Island of Gotland, Sweden, delineated from mitochondrial DNA. Journal of Fish Biology, 60, 49-71.
26. Larsen K (1970) Hvor fanges de bornholmske havørreder?. In: Fiskeriundersøgelser I 1970 Ved Danmark, Færøerne Og Grønland (eds Ursin E, Horsted SA), pp. 10-16. Andr. Fr. Høst og Søn, Copenhagen.
27. Larsen K (1984) Havørredopgangen i danske vandløb 1900-60. I. Øerne vest for Storebælt. Meddelelser fra Ferskvandsfiskerilaboratoriet 1/84.
28. Maudet C, Miller C, Bassano B, et al. (2002) Microsatellite DNA and recent statistical methods in wildlife conservation management: applications in Alpine ibex [Capra ibex (ibex)]. Molecular Ecology, 11, 421-436.
29. McCauley DE (1993) Genetic consequences of extinction and recolonisation in fragmented habitats. In: Biotic Interaction and Global Change (eds Kareiva PM, Kingslover JG, Huey RB), pp. 217-233. Sinauer, Sunderland, MA.
30. McElroy TC, Kandl KL, Garcia J, Trexler JC (2003) Extinction- colonization dynamics structure genetic variation of spotted sunfish (Lepomis punctatus) in the Florida Everglades. Molecular Ecology, 12, 355-368.
31. Miller LM, Kapuscinski AR (1997) Historical analysis of genetic variation reveals low effective population size in northern pike (Esox lucius) population. Genetics, 147, 1249-1258.
32. Nielsen EE, Hansen MM, Loeschcke V (1997) Analysis of microsatellite DNA from old scale samples of Atlantic salmon Salmo salar: a comparison of genetic composition over 60 years. Molecular Ecolology, 6, 487-492.
33. Nielsen EE, Hansen MM, Loeschcke V (1999) Genetic variation in time and space: microsatellite analysis of extinct and extant populations of Atlantic salmon. Evolution, 53, 261-268.
34. O'Reilly PT, Hamilton LC, McConnell SK, Wright JM (1996) Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Canadian Journal of Fisheries and Aquatatic Sciences, 53, 2292-2298.
35. Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology, 4, 347-354.
36. Raymond M, Rousset F (1995) GENEPOP (Version 1.2): a population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
37. Rice WR (1989) Analysing tables of statistical tests. Evolution, 43, 223-225.
38. Roslin T (2001) Spatial population structure in a patchily distributed beetle. Molecular Ecology, 10, 823-837.
39. Rousset F, Raymond M (1995) Testing heterozygote excess and deficiency. Genetics, 140, 1413-1419.
40. Ruzzante DE, Taggart CT, Doyle RW, Cook D (2001) Stability in the historical pattern of genetic structure of Newfoundland cod (Gadus morhua) despite the catastrophic decline in population size. Conservation Genetics, 2, 257-269.
41. Ryman N (1997) Minimizing adverse effects of fish culture: understanding the genetics of populations with overlapping generations. ICES Journal of Marine Science, 54, 1149-1159.
42. Schneider S, Kueffer J-M, Roessli D, Excoffier L (1997) Arlequin, Version 1.1. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
43. Slettan A, Olsaker I, Lie Ø (1995) Atlantic salmon, Salmo salar, microsatellites at the SSOSL25, SSOSL85, SSOSL311, SSOSL417 loci. Animal Genetics, 26, 277-285.
44. Stabell OB (1984) Homing and olfaction in salmonids: a critical review with special reference to Atlantic salmon. Biological Review, 59, 333-388.
45. Tessier S, Bernatchez L (1999) Stability of populations structure and gene diversity across generations assessed by microsatellites among sympatric populations of landlocked Atlantic salmon (Salmo salar L.). Molecular Ecology, 8, 169-179.
46. Titus RG, Mosegaard H (1992) Fluctuating recruitment and variable life history of migratory brown trout, Salmo trutta L., in a small, unstable stream. Journal of Fish Biology, 41, 239-255.
47. Wang J, Whitlock MC (2003) Estimating effective population size and migration rates from genetic samples over space and time. Genetics, 163, 429-446.
48. Waples RS (1989) A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics, 121, 379-391.
49. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.