Extinction-colonization dynamics structure genetic variation of spotted sunfish (Lepomis punctatus) in the Florida Everglades

Molecular Ecology

Volumn 12, Issue 2, 2003, Pages 355-368

  McElroy, T C ^a   Kandl, K L ^b   Garcia, J ^a   Trexler, J C ^a  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b University of New Orleans   (United States)

Author keywords

Allozymes; Extinction; Florida Everglades; Lepomis punctatus; Microsatellites; Migration; Population structure

Indexed keywords

ANIMALS; CONSERVATION OF NATURAL RESOURCES; DATA INTERPRETATION, STATISTICAL; FLORIDA; GENETICS, POPULATION; ISOENZYMES; MICROSATELLITE REPEATS; MODELS, GENETIC; PERCIFORMES; VARIATION (GENETICS);

ANIMALIA; CENTRARCHIDAE; LEPOMIS; LEPOMIS PUNCTATUS; PISCES;

EID: 12244290968     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01738.x     Document Type: Article

References (44)

1. Arnaud JF, Madec L, Guiller A, Bellido A (2001) Spatial analysis of allozyme and microsatellite DNA polymorphisms in the land snail Helix aspersa (Gastropoda: Helicidae). Molecular Ecology, 10, 1563-1576.
2. Ayala JW, Powell JR, Tracey ML, Mourao CA, Perez-Salas S (1972) Enzyme variability in the Drosophila willistoni group. IV. Genic variation in natural populations of Drosophila willistoni. Genetics, 70, 113-139.
3. Blake NM (1980) Land into Water - Water into Land. A History of Water Management in Florida. University Presses of Florida, Tallahassee.
4. n microsatellites and its potential for assessment of mating success. Canadian Journal of Fisheries and Aquatic Sciences, 53, 342-349.
5. Cornuet J-M, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001-2014.
6. Cornuet J-M, Piry S, Luikart G, Estoup A, Solignac M (1999) New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics, 153, 1989-2000.
7. David P, Perdieu M-A, Pernot A-F, Jarne P (1997) Fine-grained spatial and temporal population genetic structure in the marine bivalve Spisula ovalis. Evolution, 51, 1318-1322.
8. DeAngelis DL, Loftus WL, Trexler JC, Ulanowicz RE (1997) Modeling fish dynamics and effects of stress in a hydrologically pulsed system. Journal of Aquatic Ecosystem Stress and Recovery, 6, 1-13.
9. DeWoody JA, Fletcher DE, Wilkins SD, Nelson WS, Avise JC (1998) Molecular genetic dissection of spawning, parentage, and reproductive tactics in a population of redbreast sunfish, Lepomis auritus. Evolution, 52, 1802-1810.
10. Estoup A, Rousset F, Michalakis Y, Cornuet J-M, Adriamanga M, Guyomard R (1998) Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta) Molecular Ecology, 7, 339-353.
11. Fennema RJ, Neidrauer CJ, Johnson RA, MacVicar TK, Perkins WA (1994) A computer model to simulate natural Everglades hydrology. In: Everglades, the Ecosystem and its Restoration (eds Davis SM, Ogden JC), pp. 249-289. St Lucie Press, Boca Raton, FL.
12. Goudet J (2001) FSTAT, a Program to Estimate and Test Gene Diversities and Fixation Indices Version 2.9.3. http://www.unil.ch/izea/softwares/fstat.html.UpdatedfromGoudet.
13. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics, 48, 361-372.
14. Hartl DL, Clark AG (1997) Random genetic drift. In: Principles of Population Genetics, 3rd edn, pp. 267-313. Sinauer Associates, Inc., Sunderland, MA.
15. Hedrick PW (1999) Highly variable loci and their interpretation in evolution and conservation. Evolution, 53, 313-318.
16. Hoelzel AR, Green A (1992) Analysis of population-level variation by sequencing PCR-amplified DNA. In: Molecular Genetic Analysis of Populations: a Practical Approach (ed. Hoelzel AR), pp. 159-186. IRL Press, Oxford.
17. Hutchison DW, Templeton AR (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution, 53, 1898-1854.
18. King TL, Kalinowski ST, Schill WB, Spidle AP, Lubinski BA (2001) Population structure of Atlantic salmon (Salmo salar L.): a range-wide perspective from microsatellite DNA variation. Molecular Ecology, 10, 807-821.
19. Lewis PO, Zaykin D (1997) Genetic Data Analysis: computer program for the analysis of allelic data. http://chee.unm.edu/gda/.
20. Light SS, Dineen JW (1994) Water control in the Everglades: a historical perspective. In: Everglades, the Ecosystem and its Restoration (eds Davis SM, Ogden JC), pp. 47-84. St Lucie Press, Boca Raton, FL.
21. Littell RC, Milliken GA, Stroup WW, Wolfinger RD (1996) SAS System for Mixed Models. SAS Institute Inc, Cary, NC.
22. Loftus WF, Eklund AM (1994) Long-term dynamics of an Everglades small-fish assemblage. In: Everglades, the Ecosystem and its Restoration (eds Davis SM, Ogden JC), pp. 461-484. St Lucie Press, Boca Raton, FL.
23. Loftus WF, Kushlan JA (1987) Freshwater fishes of southern Florida. Bulletin of the Florida State Museum, Biological Science, 31, 147-344.
24. Louis EJ, Dempster ER (1987) An exact test for Hardy-Weinberg and multiple alleles. Biometrics, 43, 805-811.
25. Mantel N (1967) The detection of disease clustering and generalized regression approach. Cancer Research, 27, 209-220.
26. McCauley DE, Raveill J, Antonovics J (1995) Local founding events as determinants of genetic structure in a plant meta-population. Heredity, 75, 630-636.
27. Murphy RW, Sites JW Jr, Buth DG, Haufler CH (1996) Proteins: Isozyme electrophoresis. 120. In: Molecular Systematics, 2nd edn (eds Hillis DM, Moritz C, Mable BK), pp. 51-120. Sinauer, Sunderland, MA.
28. Nagylaki T (1998) Fixation indices in subdivided populations. Genetics, 148, 1325-1332.
29. Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology, 4, 347-354.
30. Pannell JR, Charlesworth B (1999) Neutral genetic diversity in a metapopulation with recurrent local extinction and recolonization. Evolution, 53, 664-676.
31. Piry S, Luikart G, Cornuet JM (1999) BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity, 90, 502-503.
32. Rannala B, Mountain JL (1997) Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences USA, 94, 9197-9221.
33. Raymond M, Rousset F (1995) GENEPOP Version 32.: population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
34. Ross KG, DeWayne Shoemaker D, Krieger MJB, Deheer CJ, Keller L (1999) Assessing genetic structure with multiple classes of molecular markers: a case study involving the introduced fire ant Solenopsis invicta. Molecular Biology and Evolution, 16, 525-543.
35. Ruzzante DE (1998) A comparison of several measures of genetic distance and population structure with microsatellite data: Bias and sampling variance. Canadian Journal of Fisheries and Aquatic Sciences, 55, 1-14.
36. Selander RK, Smith MH, Yang SY, Johnson WE, Gentry JR (1971) Biochemical polymorphism and systematics in the genus Peromyscus I Variation in the old-field mouse (Peromyscus polionotus) stud gene VI. University Texas Publications, 7103, 49-90.
37. Slatkin M (1977) Gene flow and genetic drift in a species subject to frequent local extinctions. Theoretical Population Biology, 12, 253-262.
38. Slatkin M (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
39. Tessier N, Bernatchez L (1999) Stablity of population structure and genetic diversity across generations assessed by microsatellites among sympatric populations of landlocked Atlantic salmon (Salmo salar L.). Molecular Ecology, 8, 169-179.
40. Trexler JC, Loftus WF, Jordan F, Chick JH, Kandl KL, McElroy TC, Bass OL (2001) Ecological scale and its implications for freshwater fishes in the Florida Everglades. In: The Everglades, Florida Bay, and Coral Reefs of the Florida Keys An Ecological Sourcebook (eds Porter JW, Porter KG), pp. 153-181. CRC Press, Boca Raton, FL.
41. Wade MJ, McCauley DE (1988) Extinction and recolonization: their effects on the genetic differentiation of local populations. Evolution, 42, 995-1005.
42. Weir BS (1990) Genetic Data Analysis. Sinauer, Sunderland, MA.
43. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
44. Whitlock MC, McCauley DE (1990) Some population genetic consequences of colony formation and extinction: Genetic correlations within founding groups. Evolution, 44, 1717-1724.